Carg05541 (gene) Silver-seed gourd

NameCarg05541
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_046 : 1049171 .. 1050216 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGTGTCAGCGATGAGGCTGAGCCTCGAAGGGGATGCACTAGTGGGTCCCACATCGATTGGAGGAGGGAACGAGTGACAGCGAGGACAATGGGCTCTGAAGGGCCGTGGACTGTGAGATCTCACATCAATTGGGAAAGAGAACAAAACATTGTTTACAAGAGCGTGGGAAGCATTCTCCCTAGTAGTCGCGTTTTAAAAACCTTAAAGCTCTAAAGTGAAAACCGAAACAGGATAATATTTTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCGAGACTTTAAAACGTGTCTGCTAGAGGAAGGTTTTCACACCCTTGTAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGCGCCCAGCGTCCTCGCTGTTCCTTCCTCTAATCGATGTGGGACCACCCCCAAATCCACCCCCTTTGGACCCAGCGTTCTTACTGGCACACCGCCTCATACCTACCCCATTCGGGGAACAGCGAGAAGGCTGACACATAGTCCGATGTCTGGCACTGATACTATTTGTAACGGCCCAGATCCACCGTTAGCGGATATTGTCCTCTTTGGGCTTCCCCTCAAAGCTTTAAAATACGTCTGCTAGTGAAAGGTTTCCACACCCTTTTAAATGGTGGTTTGTTCTCTTCCCCGACTAATATGTAAGGTTGCATATTTGTTAACAGTCATGCTTGTGACAAGCATGCCTCCTTGGGCAGCAAAAGAGCGCGTAACTGTACGCGTTCATAATTGGCGAGGTGGCTAGTTTGTAATTTTATGAAAAATGAAGGGCATAACTGCAAATCGGGGTTTCTATTTCCAACATGCGGGATAGATATTTTCTCTCATTCTTACAGGCTACAAAAGGGGAAAGACACACACCGGAGAAGGAGGAGCGAGCAGGAAATTGGAAGAAGACGAAAGATACGGAATTGAAAGCTCCCACTGTCATGTCCATGGCGTATTGGGTTTCTACTTTCAAGTCTCACTGA

mRNA sequence

ATGCGATGTGTCAGCGATGAGGCTGAGCCTCGAAGGGGATGCACTAGTGGGTCCCACATCGATTGGAGGAGGGAACGAGTGACAGCGAGGACAATGGGCTCTGAAGGGCCGTGGACTGAAGGTTTTCACACCCTTGTAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGCGCCCAGCGTCCTCGCTGTTCCTTCCTCTAATCGATGTGGGACCACCCCCAAATCCACCCCCTTTGGACCCAGCGTTCTTACTGGCACACCGCCTCATACCTACCCCATTCGGGGAACAGCGAGAAGGCTGACACATAGTCCGATGTCTGGCACTGATACTATTTGTAACGGCCCAGATCCACCGTTAGCGGATATTGTTGCATATTTGTTAACAGTCATGCTTGTGACAAGCATGCCTCCTTGGGCAGCAAAAGAGCGCGTAACTGCTACAAAAGGGGAAAGACACACACCGGAGAAGGAGGAGCGAGCAGGAAATTGGAAGAAGACGAAAGATACGGAATTGAAAGCTCCCACTGTCATGTCCATGGCGTATTGGGTTTCTACTTTCAAGTCTCACTGA

Coding sequence (CDS)

ATGCGATGTGTCAGCGATGAGGCTGAGCCTCGAAGGGGATGCACTAGTGGGTCCCACATCGATTGGAGGAGGGAACGAGTGACAGCGAGGACAATGGGCTCTGAAGGGCCGTGGACTGAAGGTTTTCACACCCTTGTAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGCGCCCAGCGTCCTCGCTGTTCCTTCCTCTAATCGATGTGGGACCACCCCCAAATCCACCCCCTTTGGACCCAGCGTTCTTACTGGCACACCGCCTCATACCTACCCCATTCGGGGAACAGCGAGAAGGCTGACACATAGTCCGATGTCTGGCACTGATACTATTTGTAACGGCCCAGATCCACCGTTAGCGGATATTGTTGCATATTTGTTAACAGTCATGCTTGTGACAAGCATGCCTCCTTGGGCAGCAAAAGAGCGCGTAACTGCTACAAAAGGGGAAAGACACACACCGGAGAAGGAGGAGCGAGCAGGAAATTGGAAGAAGACGAAAGATACGGAATTGAAAGCTCCCACTGTCATGTCCATGGCGTATTGGGTTTCTACTTTCAAGTCTCACTGA

Protein sequence

MRCVSDEAEPRRGCTSGSHIDWRRERVTARTMGSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTICNGPDPPLADIVAYLLTVMLVTSMPPWAAKERVTATKGERHTPEKEERAGNWKKTKDTELKAPTVMSMAYWVSTFKSH
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05541-RACarg05541-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..172

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05541Cp4.1LG12g03220Cucurbita pepo (Zucchini)carcpeB0099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05541Silver-seed gourdcarcarB079
Carg05541Silver-seed gourdcarcarB081
Carg05541Silver-seed gourdcarcarB085
Carg05541Cucumber (Gy14) v2carcgybB0070
Carg05541Cucumber (Gy14) v2carcgybB0072
Carg05541Cucumber (Gy14) v2carcgybB0079
Carg05541Cucumber (Gy14) v1carcgyB0076
Carg05541Cucumber (Gy14) v1carcgyB0083
Carg05541Cucurbita maxima (Rimu)carcmaB0089
Carg05541Cucurbita maxima (Rimu)carcmaB0091
Carg05541Cucurbita maxima (Rimu)carcmaB0095
Carg05541Cucurbita maxima (Rimu)carcmaB0096
Carg05541Cucurbita moschata (Rifu)carcmoB0096
Carg05541Cucurbita moschata (Rifu)carcmoB0095
Carg05541Cucurbita moschata (Rifu)carcmoB0097
Carg05541Cucurbita moschata (Rifu)carcmoB0101
Carg05541Cucurbita moschata (Rifu)carcmoB0103
Carg05541Cucurbita moschata (Rifu)carcmoB0104
Carg05541Cucurbita pepo (Zucchini)carcpeB0098
Carg05541Cucurbita pepo (Zucchini)carcpeB0102
Carg05541Cucurbita pepo (Zucchini)carcpeB0106
Carg05541Cucurbita pepo (Zucchini)carcpeB0108
Carg05541Cucurbita pepo (Zucchini)carcpeB0109
Carg05541Wild cucumber (PI 183967)carcpiB0075
Carg05541Wild cucumber (PI 183967)carcpiB0073
Carg05541Wild cucumber (PI 183967)carcpiB0083
Carg05541Cucumber (Chinese Long) v2carcuB0070
Carg05541Cucumber (Chinese Long) v2carcuB0071
Carg05541Cucumber (Chinese Long) v2carcuB0079
Carg05541Cucumber (Chinese Long) v3carcucB0077
Carg05541Cucumber (Chinese Long) v3carcucB0079
Carg05541Cucumber (Chinese Long) v3carcucB0086
Carg05541Bottle gourd (USVL1VR-Ls)carlsiB061
Carg05541Bottle gourd (USVL1VR-Ls)carlsiB062
Carg05541Bottle gourd (USVL1VR-Ls)carlsiB064
Carg05541Bottle gourd (USVL1VR-Ls)carlsiB065
Carg05541Melon (DHL92) v3.5.1carmeB0067
Carg05541Melon (DHL92) v3.5.1carmeB0074
Carg05541Melon (DHL92) v3.6.1carmedB0068
Carg05541Melon (DHL92) v3.6.1carmedB0075
Carg05541Watermelon (Charleston Gray)carwcgB0070
Carg05541Watermelon (Charleston Gray)carwcgB0071
Carg05541Watermelon (Charleston Gray)carwcgB0072
Carg05541Watermelon (Charleston Gray)carwcgB0073
Carg05541Watermelon (97103) v1carwmB0068
Carg05541Watermelon (97103) v1carwmB0070
Carg05541Watermelon (97103) v1carwmB0071
Carg05541Watermelon (97103) v1carwmB0073
Carg05541Watermelon (97103) v2carwmbB0067
Carg05541Watermelon (97103) v2carwmbB0068
Carg05541Watermelon (97103) v2carwmbB0069
Carg05541Watermelon (97103) v2carwmbB0070
Carg05541Wax gourdcarwgoB0079
Carg05541Wax gourdcarwgoB0080
Carg05541Wax gourdcarwgoB0085
Carg05541Wax gourdcarwgoB0086