Carg05372 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05372
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peptidoglycan-binding LysM domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_010 : 1451185 .. 1451469 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGAGATCATCATCAAGGAGGGAGTTTTTGGTTCTGGTTTTGGTATTGAGCTGGTGGTGCGTATGGTGCTGCAACAGCCAAGAGGTATTGATGGGGTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGAGCATTAGTGAAAAGTGTGGAGATCCTTTCATTTTTGAACACAATCCTCATATTAATGATGTTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCCTTTCTTCATCGTTTTCTCGATGGCGTTCGTCTCGGTTGA

mRNA sequence

ATGGCCAAGAGATCATCATCAAGGAGGGAGTTTTTGGTTCTGGTTTTGGTATTGAGCTGGTGGTGCGTATGGTGCTGCAACAGCCAAGAGGTATTGATGGGGTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGAGCATTAGTGAAAAGTGTGGAGATCCTTTCATTTTTGAACACAATCCTCATATTAATGATGTTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCCTTTCTTCATCGTTTTCTCGATGGCGTTCGTCTCGGTTGA

Coding sequence (CDS)

ATGGCCAAGAGATCATCATCAAGGAGGGAGTTTTTGGTTCTGGTTTTGGTATTGAGCTGGTGGTGCGTATGGTGCTGCAACAGCCAAGAGGTATTGATGGGGTGTGATGAGATATATGTCGTTCGTGAAGGAGAAACTTTGCAGAGCATTAGTGAAAAGTGTGGAGATCCTTTCATTTTTGAACACAATCCTCATATTAATGATGTTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCCTTTCTTCATCGTTTTCTCGATGGCGTTCGTCTCGGTTGA

Protein sequence

MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG

Homology

[Close]

BLAST of Carg05372 vs. NCBI nr
Match: POF00179.1 (hypothetical protein CFP56_65972 [Quercus suber])

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 56/95 (58.95%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVLMG-----------CDEIYVVREGETLQSISEKCGDPFI 70
           FL ++LVLS     CC S E               CDEIYVV EGETL +ISEKCGDP+I
Sbjct: 21  FLAIMLVLS-----CCESSESEFAVRMVQMQFNKPCDEIYVVGEGETLHTISEKCGDPYI 80

Query: 71  FEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG 95
            E NPHI+D DDVFPGLVIKITPF+ R L   RLG
Sbjct: 81  VEENPHIHDPDDVFPGLVIKITPFIDRLLGCQRLG 110

[Close]

BLAST of Carg05372 vs. NCBI nr
Match: XP_019186406.1 (PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil])

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 57/111 (51.35%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   MAKRSSSRREFLVLVLVLSWWC---------VWCCNSQEVLMG----------------C 60
           M+ R  S     VL   LSW+C         + CC S E                    C
Sbjct: 1   MSSRVGSTSSMNVLAEKLSWYCALFMALMLVLSCCESTENEFAAKMMVERPPHAAAAGVC 60

Query: 61  DEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHR 87
           DEIYVVREGETL +IS+KCGDPFI E NPHI+D DDVFPGLVIKITPF HR
Sbjct: 61  DEIYVVREGETLHTISDKCGDPFIVEENPHIHDPDDVFPGLVIKITPFNHR 111

[Close]

BLAST of Carg05372 vs. NCBI nr
Match: XP_009621487.1 (PREDICTED: uncharacterized protein LOC104113099 [Nicotiana tomentosiformis] >XP_016512287.1 PREDICTED: uncharacterized protein LOC107829327 [Nicotiana tabacum])

HSP 1 Score: 103.2 bits (256), Expect = 4.9e-19
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPF 70
           FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPF
Sbjct: 21  FLAIMLVLSWFDQY--NESEFIVQMQQQKMVREKMPCDEIYVVREGETLQTISEKCGDPF 80

Query: 71  IFEHNPHINDVDDVFPGLVIKITPF 84
           I E NPHI+D DDVFPGL+IKITPF
Sbjct: 81  IVEENPHIHDPDDVFPGLIIKITPF 103

[Close]

BLAST of Carg05372 vs. NCBI nr
Match: XP_012066520.1 (uncharacterized protein LOC105629522 [Jatropha curcas])

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 53/98 (54.08%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 13  VLVLVLSWWC---------VWCCNSQE------------VLMGCDEIYVVREGETLQSIS 72
           +L   +SW+C         + CC   E            V  GCDEIYVVREGETL SIS
Sbjct: 9   ILAEKISWYCALLMAILMILSCCEVSESEFVMKNQNGFVVNKGCDEIYVVREGETLHSIS 68

Query: 73  EKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLD 90
           EKCGDP+I E NPHI+D DDVFPGLVIKITPF +R+ +
Sbjct: 69  EKCGDPYIVEENPHIHDPDDVFPGLVIKITPFNNRYFN 106

[Close]

BLAST of Carg05372 vs. NCBI nr
Match: XP_019249025.1 (PREDICTED: uncharacterized protein LOC109228329 [Nicotiana attenuata] >OIT02615.1 hypothetical protein A4A49_04573 [Nicotiana attenuata])

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPF 70
           FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPF
Sbjct: 21  FLAIMLVLSWFDQY--NESEFIVQMQQHMMVREKMPCDEIYVVREGETLQTISEKCGDPF 80

Query: 71  IFEHNPHINDVDDVFPGLVIKITPF 84
           I E NPHI+D DDV+PGLVIKITPF
Sbjct: 81  IVEENPHIHDPDDVYPGLVIKITPF 103

[Close]

BLAST of Carg05372 vs. TAIR10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-18
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 35  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFL 85
           CDEIY V+EGETLQ+ISEKCGDP+I E NPHI+D DD+FPGL+I+ITP L
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

[Close]

BLAST of Carg05372 vs. TAIR10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 35 CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF 84
          C+EIY+V EGETL +I +KCGDPFI E NPHI+D DDVFPGLV+KI PF
Sbjct: 48 CEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96

[Close]

BLAST of Carg05372 vs. TAIR10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 35  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKI 81
           C+E+YVV EG+TL SISEKCGDPFI E NPHI+D DDVFPGL+IK+
Sbjct: 59  CEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Carg05372 vs. TrEMBL
Match: tr|A0A2P4L4H7|A0A2P4L4H7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65972 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 56/95 (58.95%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVLMG-----------CDEIYVVREGETLQSISEKCGDPFI 70
           FL ++LVLS     CC S E               CDEIYVV EGETL +ISEKCGDP+I
Sbjct: 21  FLAIMLVLS-----CCESSESEFAVRMVQMQFNKPCDEIYVVGEGETLHTISEKCGDPYI 80

Query: 71  FEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG 95
            E NPHI+D DDVFPGLVIKITPF+ R L   RLG
Sbjct: 81  VEENPHIHDPDDVFPGLVIKITPFIDRLLGCQRLG 110

[Close]

BLAST of Carg05372 vs. TrEMBL
Match: tr|A0A1S4DFP9|A0A1S4DFP9_TOBAC (uncharacterized protein LOC107829327 OS=Nicotiana tabacum OX=4097 GN=LOC107829327 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-19
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPF 70
           FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPF
Sbjct: 21  FLAIMLVLSWFDQY--NESEFIVQMQQQKMVREKMPCDEIYVVREGETLQTISEKCGDPF 80

Query: 71  IFEHNPHINDVDDVFPGLVIKITPF 84
           I E NPHI+D DDVFPGL+IKITPF
Sbjct: 81  IVEENPHIHDPDDVFPGLIIKITPF 103

[Close]

BLAST of Carg05372 vs. TrEMBL
Match: tr|A0A1J6IY47|A0A1J6IY47_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_04573 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-19
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPF 70
           FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPF
Sbjct: 21  FLAIMLVLSWFDQY--NESEFIVQMQQHMMVREKMPCDEIYVVREGETLQTISEKCGDPF 80

Query: 71  IFEHNPHINDVDDVFPGLVIKITPF 84
           I E NPHI+D DDV+PGLVIKITPF
Sbjct: 81  IVEENPHIHDPDDVYPGLVIKITPF 103

[Close]

BLAST of Carg05372 vs. TrEMBL
Match: tr|V4SRY3|V4SRY3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013835mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-19
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQE-------------VLMGCDEIYVVREGETLQSISEKCGDP 70
           F+ ++LVLS     CC S +             V   CDEIYVVREGETL +ISEKCGDP
Sbjct: 21  FMAIMLVLS-----CCESSDGGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDP 80

Query: 71  FIFEHNPHINDVDDVFPGLVIKITPFLHR 87
           +I E NPHIND DDVFPGLVIKITPF +R
Sbjct: 81  YIVEQNPHINDPDDVFPGLVIKITPFKNR 104

[Close]

BLAST of Carg05372 vs. TrEMBL
Match: tr|A0A067F127|A0A067F127_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044600mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-19
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 11  FLVLVLVLSWWCVWCCNSQE-------------VLMGCDEIYVVREGETLQSISEKCGDP 70
           F+ ++LVLS     CC S +             V   CDEIYVVREGETL +ISEKCGDP
Sbjct: 21  FMAIMLVLS-----CCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDP 80

Query: 71  FIFEHNPHINDVDDVFPGLVIKITPFLHR 87
           +I E NPHIND DDVFPGLVIKITPF +R
Sbjct: 81  YIVEQNPHINDPDDVFPGLVIKITPFKNR 104

The following BLAST results are available for this feature:

BLAST of Carg05372 vs. NCBI nr


Match Name	E-value	Identity	Description
POF00179.1	1.3e-19	58.95	hypothetical protein CFP56_65972 [Quercus suber]	[more]
XP_019186406.1	3.7e-19	51.35	PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil]	[more]
XP_009621487.1	4.9e-19	62.35	PREDICTED: uncharacterized protein LOC104113099 [Nicotiana tomentosiformis] >XP_...	[more]
XP_012066520.1	6.4e-19	54.08	uncharacterized protein LOC105629522 [Jatropha curcas]	[more]
XP_019249025.1	8.3e-19	62.35	PREDICTED: uncharacterized protein LOC109228329 [Nicotiana attenuata] >OIT02615....	[more]

BLAST of Carg05372 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52790.1	5.0e-18	76.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G62150.1	1.1e-17	73.47	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	2.1e-16	76.09	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Carg05372 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05372 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4L4H7\|A0A2P4L4H7_QUESU	8.5e-20	58.95	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65972 PE=4 SV=1	[more]
tr\|A0A1S4DFP9\|A0A1S4DFP9_TOBAC	3.2e-19	62.35	uncharacterized protein LOC107829327 OS=Nicotiana tabacum OX=4097 GN=LOC10782932...	[more]
tr\|A0A1J6IY47\|A0A1J6IY47_NICAT	5.5e-19	62.35	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_04573 PE=4 SV=1	[more]
tr\|V4SRY3\|V4SRY3_9ROSI	7.2e-19	59.55	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013835mg PE=4 ...	[more]
tr\|A0A067F127\|A0A067F127_CITSI	7.2e-19	59.55	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044600mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036779	LysM_dom_sf
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05372-RA	Carg05372-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 39..80 e-value: 9.5E-5 score: 22.3
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 38..80 e-value: 5.3423E-7 score: 41.3169
IPR036779	LysM domain superfamily	GENE3D	G3DSA:3.10.350.10		coord: 27..85 e-value: 2.2E-5 score: 25.8
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 29..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05372	MELO3C024535	Melon (DHL92) v3.5.1	carmeB0805
Carg05372	ClCG04G009940	Watermelon (Charleston Gray)	carwcgB0789
Carg05372	Cucsa.083280	Cucumber (Gy14) v1	carcgyB0916
Carg05372	MELO3C024535.2	Melon (DHL92) v3.6.1	carmedB0816
Carg05372	CsaV3_6G040590	Cucumber (Chinese Long) v3	carcucB0850
Carg05372	Bhi03G001432	Wax gourd	carwgoB0945

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05372	Silver-seed gourd	carcarB280
Carg05372	Silver-seed gourd	carcarB292
Carg05372	Cucumber (Gy14) v2	carcgybB0799
Carg05372	Cucumber (Gy14) v2	carcgybB0796
Carg05372	Cucumber (Gy14) v1	carcgyB0923
Carg05372	Cucurbita maxima (Rimu)	carcmaB1129
Carg05372	Cucurbita maxima (Rimu)	carcmaB1117
Carg05372	Cucurbita maxima (Rimu)	carcmaB1125
Carg05372	Cucurbita maxima (Rimu)	carcmaB1130
Carg05372	Cucurbita moschata (Rifu)	carcmoB1088
Carg05372	Cucurbita moschata (Rifu)	carcmoB1095
Carg05372	Cucurbita moschata (Rifu)	carcmoB1099
Carg05372	Cucurbita moschata (Rifu)	carcmoB1100
Carg05372	Cucurbita pepo (Zucchini)	carcpeB1141
Carg05372	Cucurbita pepo (Zucchini)	carcpeB1128
Carg05372	Cucurbita pepo (Zucchini)	carcpeB1135
Carg05372	Cucurbita pepo (Zucchini)	carcpeB1138
Carg05372	Wild cucumber (PI 183967)	carcpiB0842
Carg05372	Wild cucumber (PI 183967)	carcpiB0847
Carg05372	Cucumber (Chinese Long) v2	carcuB0822
Carg05372	Cucumber (Chinese Long) v2	carcuB0826
Carg05372	Cucumber (Chinese Long) v3	carcucB0846
Carg05372	Bottle gourd (USVL1VR-Ls)	carlsiB742
Carg05372	Bottle gourd (USVL1VR-Ls)	carlsiB744
Carg05372	Melon (DHL92) v3.5.1	carmeB0803
Carg05372	Melon (DHL92) v3.6.1	carmedB0815
Carg05372	Watermelon (Charleston Gray)	carwcgB0776
Carg05372	Watermelon (Charleston Gray)	carwcgB0787
Carg05372	Watermelon (97103) v1	carwmB0800
Carg05372	Watermelon (97103) v1	carwmB0807
Carg05372	Watermelon (97103) v1	carwmB0814
Carg05372	Watermelon (97103) v2	carwmbB0840
Carg05372	Watermelon (97103) v2	carwmbB0849