Carg05063 (gene) Silver-seed gourd

Overview
NameCarg05063
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription initiation factor tfiid subunit 1
LocationCucurbita_argyrosperma_scaffold_060 : 1127516 .. 1128670 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAACATAGATGGTGGGAAAAACAAGAGAAGCGGAGAAAGGAAGAGAGACTAAGAGAAGAGGAGGCGAGGAGGGTTTACAATGAAGAAATGGGGATGCGGGAGGAACAAGAGAAGTTGGCAGAGATTAGACGATTTGAAGCAAGCATTAGAAGTGATAAGGAGGAAGAAGAACGTCTAAAAGCGAAGAAGAAGAAGAAGAAACGAATCCCGGAAATAATGAATGATTATGTGGAAGACCCCAGATCAAGAAGAATGGATAAAAGGGTTGTTCTAGAAAGAGACCGTAGTTTAAAAAGGAAGCCCATTGAATTGGGAAGACATGGTGCAGAGCATGCATCATCTACAAAGCGCCGTAGAGTGGGAGAGGTATGTGTGTACTTTGAAAGATTTTCTCTACTTTTGTGCTATTCACTTATCTACATTCATTGATAACTTGAGTAATTATCGTTTCAGGTTGGTTTGTCGAATATCTTGGAGCGGATTGTCGAGACCCTCAAAGAGAGGTACGATATTTCATATCTCTTTTTAAAACCAGTGTCCAAGAAGGAGGCTCCTGATTACCTGGATATCATAGAGCGTCCAATGGATCTTTCTACCATTAGAGAGAAGGTTAGAAGGTTGGAATACAAGACCCGGGACGAGTTCAGGCATGACGTATGGCAGATAATGTATAATGCTCACATGTACAACGATGGGCGCAACCCAGGTATTCCTCCCTTAGCAGACCAGCTTTTGGGTCTTTGTGACAATCTGTTAGACAAAAACGACGATGAATTAACCGAAGCTGAAATGGGAATCGAGTTTAGGGATTCGTAGGGGAGTACATACCAAAACGTGCCTTTGTGTATCATATTACATAATAGTGTAGTGTATCTAGGCGGAACTCTCATTCCCATGGCCAGATAGTTTTAACATACTATTCTATTCCATTAGAGGTTTAGGAAATCCAGTTGCCATTGCTGGTGAGAGTTCAAGGGTAAGAAGGCAGGCTTAGAACACAACCATGGTTATTAGAATGTTGTGCCAAAAAAGTTGAAGAGAGATATTATGGGGGATAGAACTCGTGGATATAGAACCAACCTTCTTTAGAGTATCGTAGCGATGTATATAAACCCGCGATCAAAATATTTTTGGGTTTAAGAGAAAAATATT

mRNA sequence

GAAGAACATAGATGGTGGGAAAAACAAGAGAAGCGGAGAAAGGAAGAGAGACTAAGAGAAGAGGAGGCGAGGAGGGTTTACAATGAAGAAATGGGGATGCGGGAGGAACAAGAGAAGTTGGCAGAGATTAGACGATTTGAAGCAAGCATTAGAAGTGATAAGGAGGAAGAAGAACGTCTAAAAGCGAAGAAGAAGAAGAAGAAACGAATCCCGGAAATAATGAATGATTATGTGGAAGACCCCAGATCAAGAAGAATGGATAAAAGGGTTGTTCTAGAAAGAGACCGTAGTTTAAAAAGGAAGCCCATTGAATTGGGAAGACATGGTGCAGAGCATGCATCATCTACAAAGCGCCGTAGAGTGGGAGAGGTTGGTTTGTCGAATATCTTGGAGCGGATTGTCGAGACCCTCAAAGAGAGGTACGATATTTCATATCTCTTTTTAAAACCAGTGTCCAAGAAGGAGGCTCCTGATTACCTGGATATCATAGAGCGTCCAATGGATCTTTCTACCATTAGAGAGAAGGTTAGAAGGTTGGAATACAAGACCCGGGACGAGTTCAGGCATGACGTATGGCAGATAATGTATAATGCTCACATGTACAACGATGGGCGCAACCCAGGTATTCCTCCCTTAGCAGACCAGCTTTTGGGTCTTTGTGACAATCTGTTAGACAAAAACGACGATGAATTAACCGAAGCTGAAATGGGAATCGAGTTTAGGGATTCGTAGGGGAGTACATACCAAAACGTGCCTTTGTGTATCATATTACATAATAGTGTAGTGTATCTAGGCGGAACTCTCATTCCCATGGCCAGATAGTTTTAACATACTATTCTATTCCATTAGAGGTTTAGGAAATCCAGTTGCCATTGCTGGTGAGAGTTCAAGGGTAAGAAGGCAGGCTTAGAACACAACCATGGTTATTAGAATGTTGTGCCAAAAAAGTTGAAGAGAGATATTATGGGGGATAGAACTCGTGGATATAGAACCAACCTTCTTTAGAGTATCGTAGCGATGTATATAAACCCGCGATCAAAATATTTTTGGGTTTAAGAGAAAAATATT

Coding sequence (CDS)

ATGGGGATGCGGGAGGAACAAGAGAAGTTGGCAGAGATTAGACGATTTGAAGCAAGCATTAGAAGTGATAAGGAGGAAGAAGAACGTCTAAAAGCGAAGAAGAAGAAGAAGAAACGAATCCCGGAAATAATGAATGATTATGTGGAAGACCCCAGATCAAGAAGAATGGATAAAAGGGTTGTTCTAGAAAGAGACCGTAGTTTAAAAAGGAAGCCCATTGAATTGGGAAGACATGGTGCAGAGCATGCATCATCTACAAAGCGCCGTAGAGTGGGAGAGGTTGGTTTGTCGAATATCTTGGAGCGGATTGTCGAGACCCTCAAAGAGAGGTACGATATTTCATATCTCTTTTTAAAACCAGTGTCCAAGAAGGAGGCTCCTGATTACCTGGATATCATAGAGCGTCCAATGGATCTTTCTACCATTAGAGAGAAGGTTAGAAGGTTGGAATACAAGACCCGGGACGAGTTCAGGCATGACGTATGGCAGATAATGTATAATGCTCACATGTACAACGATGGGCGCAACCCAGGTATTCCTCCCTTAGCAGACCAGCTTTTGGGTCTTTGTGACAATCTGTTAGACAAAAACGACGATGAATTAACCGAAGCTGAAATGGGAATCGAGTTTAGGGATTCGTAG

Protein sequence

MGMREEQEKLAEIRRFEASIRSDKEEEERLKAKKKKKKRIPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Homology
[Close]
BLAST of Carg05063 vs. NCBI nr
Match: XP_022959801.1 (transcription initiation factor TFIID subunit 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 6.8e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 40   IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 99
            IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI
Sbjct: 1512 IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 1571

Query: 100  LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
            LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH
Sbjct: 1572 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 1631

Query: 160  DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Sbjct: 1632 DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 1685

[Close]
BLAST of Carg05063 vs. NCBI nr
Match: XP_022959797.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959798.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959799.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] >XP_022959800.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 6.8e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 40   IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 99
            IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI
Sbjct: 1731 IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 1790

Query: 100  LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
            LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH
Sbjct: 1791 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 1850

Query: 160  DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Sbjct: 1851 DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 1904

[Close]
BLAST of Carg05063 vs. NCBI nr
Match: XP_023513701.1 (transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513702.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513703.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP_023513704.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0 

Query: 40   IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 99
            IPEIMNDYVEDPRSRRMDKRVVLERDRS KRKPIELGRHGAEHASSTKRRRVGEVGLSNI
Sbjct: 1731 IPEIMNDYVEDPRSRRMDKRVVLERDRSFKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 1790

Query: 100  LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
            LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH
Sbjct: 1791 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 1850

Query: 160  DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Sbjct: 1851 DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 1904

[Close]
BLAST of Carg05063 vs. NCBI nr
Match: XP_023004897.1 (transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004898.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004899.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >XP_023004900.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0 

Query: 40   IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 99
            IPEIMNDYVEDPRSRRMDKR VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI
Sbjct: 1731 IPEIMNDYVEDPRSRRMDKR-VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 1790

Query: 100  LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
            LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH
Sbjct: 1791 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 1850

Query: 160  DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Sbjct: 1851 DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 1903

[Close]
BLAST of Carg05063 vs. NCBI nr
Match: XP_023004901.1 (transcription initiation factor TFIID subunit 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0 

Query: 40   IPEIMNDYVEDPRSRRMDKRVVLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 99
            IPEIMNDYVEDPRSRRMDKR VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI
Sbjct: 1512 IPEIMNDYVEDPRSRRMDKR-VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNI 1571

Query: 100  LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
            LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH
Sbjct: 1572 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 1631

Query: 160  DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS
Sbjct: 1632 DVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 1684

[Close]
BLAST of Carg05063 vs. TAIR10
Match: AT1G32750.1 (HAC13 protein (HAC13))

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 136/215 (63.26%), Postives = 171/215 (79.53%), Query Frame = 0 

Query: 1    MGMREEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXI--PEIMNDYVEDPRSRRMDK 60
            M + EE  ++AEIRR+E  IRS  XXXXXXXXXXXXXXX   PEI+  Y+ED   R+ D+
Sbjct: 1706 MSVSEEPNEIAEIRRYEEVIRSXXXXXXXXXXXXXXXXXXXQPEIVEGYLEDYPPRKNDR 1765

Query: 61   RVVLERDRSLKRKPI-ELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLF 120
            R + ER R+++ + + +  R GAE+A   KRR+ GEVGL+NILERIV+TL+ + ++S LF
Sbjct: 1766 R-LSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLF 1825

Query: 121  LKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNP 180
            LKPVSKKEAPDYLDI+E PMDLSTIR+KVR++EY+ R++FRHDVWQI YNAH+YNDGRNP
Sbjct: 1826 LKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNP 1885

Query: 181  GIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRD 213
            GIPPLADQLL +CD LLD  +D+L EAE GI+  D
Sbjct: 1886 GIPPLADQLLEICDYLLDDYEDQLKEAEKGIDPND 1919

[Close]
BLAST of Carg05063 vs. TAIR10
Match: AT3G19040.1 (histone acetyltransferase of the TAFII250 family 2)

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 113/206 (54.85%), Postives = 148/206 (71.84%), Query Frame = 0 

Query: 5    EEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRVVLER 64
            EE+ ++AE RR+   IRS     XXXXXXXXXXXX        +E+   RR D  +  E 
Sbjct: 1579 EERSEIAESRRYREVIRS-----XXXXXXXXXXXXXXXXQRGILENYPPRRND-GISSES 1638

Query: 65   DRSLKRKPI-ELGRHGAEHASSTKRRRVGEVGLSNILERIVETLK-ERYDISYLFLKPVS 124
             +++    + +  R+  E+A   KRR+ G+VGL+NILE IV+TL+ +  ++SYLFLKPV+
Sbjct: 1639 GQNINSLCVSDFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVT 1698

Query: 125  KKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPL 184
            KKEAP+YL+I++ PMDLSTIR+KVRR+EY+ R +FRHDVWQI +NAH+YNDGRN  IPPL
Sbjct: 1699 KKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPL 1758

Query: 185  ADQLLGLCDNLLDKNDDELTEAEMGI 209
            AD+LL  CD LLD+  DEL EAE GI
Sbjct: 1759 ADELLVKCDRLLDEYRDELKEAEKGI 1778

[Close]
BLAST of Carg05063 vs. TAIR10
Match: AT5G55040.1 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 0 

Query: 100 LERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRH 159
           LE I++ L+++ DI  ++ +PV  +E PDY D+IE PMD ST+R+K+    Y T +E   
Sbjct: 191 LELILDKLQKK-DIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELES 250

Query: 160 DVWQIMYNAHMYN 173
           DV  I  NA  YN
Sbjct: 251 DVLLICSNAMQYN 262

[Close]
BLAST of Carg05063 vs. TAIR10
Match: AT1G20670.1 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 99  ILERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFR 158
           IL+R+     ++ D   ++  PV  +E PDY +II+ PMD ST+R K+    Y T ++F 
Sbjct: 183 ILDRL-----QKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFE 242

Query: 159 HDVWQIMYNAHMYN 173
            DV+ I  NA  YN
Sbjct: 243 RDVFLICTNAMEYN 251

[Close]
BLAST of Carg05063 vs. TAIR10
Match: AT1G76380.2 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 52.4 bits (124), Expect = 4.1e-07
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 99  ILERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFR 158
           IL+R+     ++ D   ++  P   +E PDY +II+ PMD +T+R+K+    Y T ++F 
Sbjct: 153 ILDRV-----QKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFE 212

Query: 159 HDVWQIMYNAHMYN 173
            DV+ I  NA  YN
Sbjct: 213 QDVFLICTNAMEYN 221

[Close]
BLAST of Carg05063 vs. Swiss-Prot
Match: sp|Q8LRK9|TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 GN=TAF1 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-58
Identity = 136/215 (63.26%), Postives = 171/215 (79.53%), Query Frame = 0 

Query: 1    MGMREEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXI--PEIMNDYVEDPRSRRMDK 60
            M + EE  ++AEIRR+E  IRS  XXXXXXXXXXXXXXX   PEI+  Y+ED   R+ D+
Sbjct: 1706 MSVSEEPNEIAEIRRYEEVIRSXXXXXXXXXXXXXXXXXXXQPEIVEGYLEDYPPRKNDR 1765

Query: 61   RVVLERDRSLKRKPI-ELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLF 120
            R + ER R+++ + + +  R GAE+A   KRR+ GEVGL+NILERIV+TL+ + ++S LF
Sbjct: 1766 R-LSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLF 1825

Query: 121  LKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNP 180
            LKPVSKKEAPDYLDI+E PMDLSTIR+KVR++EY+ R++FRHDVWQI YNAH+YNDGRNP
Sbjct: 1826 LKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNP 1885

Query: 181  GIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRD 213
            GIPPLADQLL +CD LLD  +D+L EAE GI+  D
Sbjct: 1886 GIPPLADQLLEICDYLLDDYEDQLKEAEKGIDPND 1919

[Close]
BLAST of Carg05063 vs. Swiss-Prot
Match: sp|Q6PUA2|TAF1B_ARATH (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana OX=3702 GN=TAF1B PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-43
Identity = 113/206 (54.85%), Postives = 148/206 (71.84%), Query Frame = 0 

Query: 5    EEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRVVLER 64
            EE+ ++AE RR+   IRS     XXXXXXXXXXXX        +E+   RR D  +  E 
Sbjct: 1579 EERSEIAESRRYREVIRS-----XXXXXXXXXXXXXXXXQRGILENYPPRRND-GISSES 1638

Query: 65   DRSLKRKPI-ELGRHGAEHASSTKRRRVGEVGLSNILERIVETLK-ERYDISYLFLKPVS 124
             +++    + +  R+  E+A   KRR+ G+VGL+NILE IV+TL+ +  ++SYLFLKPV+
Sbjct: 1639 GQNINSLCVSDFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVT 1698

Query: 125  KKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPL 184
            KKEAP+YL+I++ PMDLSTIR+KVRR+EY+ R +FRHDVWQI +NAH+YNDGRN  IPPL
Sbjct: 1699 KKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPL 1758

Query: 185  ADQLLGLCDNLLDKNDDELTEAEMGI 209
            AD+LL  CD LLD+  DEL EAE GI
Sbjct: 1759 ADELLVKCDRLLDEYRDELKEAEKGI 1778

[Close]
BLAST of Carg05063 vs. Swiss-Prot
Match: sp|Q67W65|TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.9e-40
Identity = 94/166 (56.63%), Postives = 119/166 (71.69%), Query Frame = 0 

Query: 45   NDYVEDPRSRRMDKRVVLERDRSLKRK-PIELGRHGAEHASSTKRRRVGEVGLSNILERI 104
            +D + DPR  + D+RV  ER R+ KR+ P ++     E+    KR R GEV LSNILE+I
Sbjct: 1650 DDDLLDPRPYKNDRRVP-ERGRAAKRRTPADM----TEYTPPAKRHRGGEVELSNILEKI 1709

Query: 105  VETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQ 164
            V+ L+     S+LF KPV+KKEAPDY DIIERPMDL TIR+KVR++EYK R++FRHDV Q
Sbjct: 1710 VDHLR-TMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQ 1769

Query: 165  IMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIE 210
            I  NAH YN  R+P IPPLAD+LL LCD LL+++ D L +AE  IE
Sbjct: 1770 IALNAHTYNLNRHPHIPPLADELLELCDYLLEESADVLDDAEYAIE 1809

[Close]
BLAST of Carg05063 vs. Swiss-Prot
Match: sp|P51123|TAF1_DROME (Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster OX=7227 GN=Taf1 PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 0 

Query: 82   HASSTKRRRVGE-VGLSNILERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLS 141
            H  +  RRR    V LS+ILE I   L+   D+S  FL PVS K+ PDY  ++ +PMDL 
Sbjct: 1460 HNKTANRRRTDPVVVLSSILEIIHNELRSMPDVS-PFLFPVSAKKVPDYYRVVTKPMDLQ 1519

Query: 142  TIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDE 201
            T+RE +R+  Y +R+ F  D+ QI+ N+ +YN G        A ++   C  LL + +D+
Sbjct: 1520 TMREYIRQRRYTSREMFLEDLKQIVDNSLIYN-GPQSAYTLAAQRMFSSCFELLAEREDK 1579

Query: 202  LTEAEMGI 209
            L   E  I
Sbjct: 1580 LMRLEKAI 1585

[Close]
BLAST of Carg05063 vs. Swiss-Prot
Match: sp|Q54DH8|TAF1_DICDI (Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum OX=44689 GN=taf1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = 0 

Query: 85   STKRRRV------GEVGLSNILERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMD 144
            S++R RV       +V LSNI ERI++ L+   D    F   V+ K APDY  +I+ P+D
Sbjct: 2100 SSRRNRVRKDGSGADVELSNIFERILDKLRTN-DEFIAFRHKVTPKLAPDYHKVIKNPID 2159

Query: 145  LSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKND 204
            L+T+R++ R  EYK++++F   +  ++ N   YN+ R   + P+A++LL     LL   D
Sbjct: 2160 LTTMRDRNRHWEYKSKNQFIDAIKLMVANCFEYNEKRFSHLLPIAEKLLTSTLQLLAPFD 2219

Query: 205  DELTEAEMGIE 210
             ++ + E  IE
Sbjct: 2220 SQIGDLEKSIE 2229

[Close]
BLAST of Carg05063 vs. TrEMBL
Match: tr|A0A0A0KA05|A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.4e-85
Identity = 183/213 (85.92%), Postives = 197/213 (92.49%), Query Frame = 0 

Query: 1    MGMREEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRV 60
            MGMREEQEKLAEIRRFEASIRSD XXXXXXXXXXXXXXXIPEI++DYVEDPRSRR DKR 
Sbjct: 1688 MGMREEQEKLAEIRRFEASIRSDXXXXXXXXXXXXXXXXIPEILDDYVEDPRSRRFDKR- 1747

Query: 61   VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLFLKP 120
             LE++RS+KRKPIELGRH  E ASSTKRRR GEVGLSNILERIVETLK+R+DISYLF+KP
Sbjct: 1748 ALEKERSMKRKPIELGRHIPEQASSTKRRRGGEVGLSNILERIVETLKDRFDISYLFIKP 1807

Query: 121  VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIP 180
            VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFR+DVWQIMYNAH+YNDGRNPGIP
Sbjct: 1808 VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIP 1867

Query: 181  PLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            PLADQLL LCD       ++LTEAE+GIE+RDS
Sbjct: 1868 PLADQLLMLCDXXXXXXXEDLTEAEIGIEYRDS 1899

[Close]
BLAST of Carg05063 vs. TrEMBL
Match: tr|A0A1S3C886|A0A1S3C886_CUCME (transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497604 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 5.0e-84
Identity = 183/213 (85.92%), Postives = 197/213 (92.49%), Query Frame = 0 

Query: 1    MGMREEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRV 60
            MGMREEQEKLAEIRRFEASIRSD XXXXXXXXXXXXXXXIPEI++DYVEDPRSRR DKR 
Sbjct: 1692 MGMREEQEKLAEIRRFEASIRSDXXXXXXXXXXXXXXXXIPEILDDYVEDPRSRRFDKR- 1751

Query: 61   VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLFLKP 120
             LE++RS+KRKPIELGRH  EHA STKRRR GEVGLSNILERIVETLK+R+DISYLFLKP
Sbjct: 1752 ALEKERSMKRKPIELGRHIPEHA-STKRRRGGEVGLSNILERIVETLKDRFDISYLFLKP 1811

Query: 121  VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIP 180
            VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFR+DVWQIMYNAH+YNDGRNPGIP
Sbjct: 1812 VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIP 1871

Query: 181  PLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            PLADQLL LCD       ++LTEAE+GIE+RD+
Sbjct: 1872 PLADQLLMLCDXXXXXXXEDLTEAEIGIEYRDN 1902

[Close]
BLAST of Carg05063 vs. TrEMBL
Match: tr|A0A1S3C6I5|A0A1S3C6I5_CUCME (transcription initiation factor TFIID subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497604 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 5.0e-84
Identity = 183/213 (85.92%), Postives = 197/213 (92.49%), Query Frame = 0 

Query: 1    MGMREEQEKLAEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRV 60
            MGMREEQEKLAEIRRFEASIRSD XXXXXXXXXXXXXXXIPEI++DYVEDPRSRR DKR 
Sbjct: 1524 MGMREEQEKLAEIRRFEASIRSDXXXXXXXXXXXXXXXXIPEILDDYVEDPRSRRFDKR- 1583

Query: 61   VLERDRSLKRKPIELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLFLKP 120
             LE++RS+KRKPIELGRH  EHA STKRRR GEVGLSNILERIVETLK+R+DISYLFLKP
Sbjct: 1584 ALEKERSMKRKPIELGRHIPEHA-STKRRRGGEVGLSNILERIVETLKDRFDISYLFLKP 1643

Query: 121  VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIP 180
            VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFR+DVWQIMYNAH+YNDGRNPGIP
Sbjct: 1644 VSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIP 1703

Query: 181  PLADQLLGLCDNLLDKNDDELTEAEMGIEFRDS 214
            PLADQLL LCD       ++LTEAE+GIE+RD+
Sbjct: 1704 PLADQLLMLCDXXXXXXXEDLTEAEIGIEYRDN 1734

[Close]
BLAST of Carg05063 vs. TrEMBL
Match: tr|A0A2P5FKG6|A0A2P5FKG6_9ROSA (Histone acetylase PCAF OS=Trema orientalis OX=63057 GN=TorRG33x02_058620 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 7.0e-70
Identity = 153/203 (75.37%), Postives = 180/203 (88.67%), Query Frame = 0 

Query: 11  AEIRRFEASIRSDKXXXXXXXXXXXXXXXIPEIMNDYVEDPRSRRMDKRVVLERDRSLKR 70
           AEIRR+E +IR   XXXXXXXXXXXXXXX  EI +DY+E  RSRR DKR+  +RDRS K+
Sbjct: 705 AEIRRYEVAIRXXXXXXXXXXXXXXXXXXXXEIEDDYIEVSRSRRFDKRIP-DRDRSAKQ 764

Query: 71  KP-IELGRHGAEHASSTKRRRVGEVGLSNILERIVETLKERYDISYLFLKPVSKKEAPDY 130
           +P +ELGR+GA+HA++TKRRR GEVGL+NILE IVETLK+RY++SYLFLKPVS+KEAPDY
Sbjct: 765 RPVVELGRYGADHAATTKRRRGGEVGLANILEHIVETLKDRYEVSYLFLKPVSRKEAPDY 824

Query: 131 LDIIERPMDLSTIREKVRRLEYKTRDEFRHDVWQIMYNAHMYNDGRNPGIPPLADQLLGL 190
           LDIIERPMDLSTI+EKVR++EYK+R++FRHDVWQI YNAH YNDGRNPGIPPLADQLL L
Sbjct: 825 LDIIERPMDLSTIKEKVRKMEYKSREQFRHDVWQIAYNAHRYNDGRNPGIPPLADQLLEL 884

Query: 191 CDNLLDKNDDELTEAEMGIEFRD 213
           CD +L++NDD LTEAE GIE RD
Sbjct: 885 CDYILNENDDSLTEAEAGIESRD 906

[Close]
BLAST of Carg05063 vs. TrEMBL
Match: tr|A0A2P5AUM5|A0A2P5AUM5_PARAD (Histone acetylase PCAF OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298810 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 133/172 (77.33%), Postives = 156/172 (90.70%), Query Frame = 0 

Query: 42  EIMNDYVEDPRSRRMDKRVVLERDRSLKRKP-IELGRHGAEHASSTKRRRVGEVGLSNIL 101
           EI +DY+ED RSRR DKR+  +RDRS KR+P +ELGR+GA+HA++TKRRR GEVGL+NIL
Sbjct: 737 EIEDDYIEDSRSRRFDKRIP-DRDRSAKRRPVVELGRYGADHAATTKRRRGGEVGLANIL 796

Query: 102 ERIVETLKERYDISYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRHD 161
           E IVETLK+RY++SYLFLKPVS+KEAPDYLDIIERPMDLSTI+EKVR+LEYK+R++FRHD
Sbjct: 797 EHIVETLKDRYEVSYLFLKPVSRKEAPDYLDIIERPMDLSTIKEKVRKLEYKSREQFRHD 856

Query: 162 VWQIMYNAHMYNDGRNPGIPPLADQLLGLCDNLLDKNDDELTEAEMGIEFRD 213
           VWQI YNAH YNDGRNPGIPPLADQLL LCD +L++NDD LTEAE GIE RD
Sbjct: 857 VWQIAYNAHRYNDGRNPGIPPLADQLLELCDYILNENDDSLTEAEAGIESRD 907

The following BLAST results are available for this feature:
BLAST of Carg05063 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959801.16.8e-93100.00transcription initiation factor TFIID subunit 1 isoform X2 [Cucurbita moschata][more]
XP_022959797.16.8e-93100.00transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata] ... [more]
XP_023513701.12.0e-9299.43transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_023004897.16.3e-9199.43transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima] >X... [more]
XP_023004901.16.3e-9199.43transcription initiation factor TFIID subunit 1 isoform X2 [Cucurbita maxima][more]
BLAST of Carg05063 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32750.11.2e-5963.26HAC13 protein (HAC13)[more]
AT3G19040.11.9e-4454.85histone acetyltransferase of the TAFII250 family 2[more]
AT5G55040.11.9e-0943.84DNA-binding bromodomain-containing protein[more]
AT1G20670.11.1e-0739.19DNA-binding bromodomain-containing protein[more]
AT1G76380.24.1e-0736.49DNA-binding bromodomain-containing protein[more]
BLAST of Carg05063 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LRK9|TAF1_ARATH2.2e-5863.26Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q6PUA2|TAF1B_ARATH3.4e-4354.85Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana OX=3702... [more]
sp|Q67W65|TAF1_ORYSJ5.9e-4056.63Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ... [more]
sp|P51123|TAF1_DROME2.8e-1338.28Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster OX=72... [more]
sp|Q54DH8|TAF1_DICDI6.8e-1235.11Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum OX=4... [more]
BLAST of Carg05063 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA05|A0A0A0KA05_CUCSA3.4e-8585.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G357030 PE=4 SV=1[more]
tr|A0A1S3C886|A0A1S3C886_CUCME5.0e-8485.92transcription initiation factor TFIID subunit 1 isoform X1 OS=Cucumis melo OX=36... [more]
tr|A0A1S3C6I5|A0A1S3C6I5_CUCME5.0e-8485.92transcription initiation factor TFIID subunit 1 isoform X2 OS=Cucumis melo OX=36... [more]
tr|A0A2P5FKG6|A0A2P5FKG6_9ROSA7.0e-7075.37Histone acetylase PCAF OS=Trema orientalis OX=63057 GN=TorRG33x02_058620 PE=4 SV... [more]
tr|A0A2P5AUM5|A0A2P5AUM5_PARAD2.6e-6977.33Histone acetylase PCAF OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298810 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR018359Bromodomain_CS
IPR036427Bromodomain-like_sf
IPR001487Bromodomain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05063-RACarg05063-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 13..33
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 21..183
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 142..160
score: 28.03
coord: 160..179
score: 26.85
coord: 112..125
score: 31.52
coord: 126..142
score: 56.65
IPR001487BromodomainSMARTSM00297bromo_6coord: 89..199
e-value: 1.0E-24
score: 98.1
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 100..175
e-value: 8.4E-21
score: 73.8
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 109..179
score: 18.943
IPR036427Bromodomain-like superfamilyGENE3DG3DSA:1.20.920.10coord: 58..211
e-value: 1.5E-30
score: 107.8
IPR036427Bromodomain-like superfamilySUPERFAMILYSSF47370Bromodomaincoord: 81..205
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 114..171