Carg05057 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05057
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Location	Cucurbita_argyrosperma_scaffold_060 : 1095786 .. 1098484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGCGTCGGATGCTCTCGGAAGCCGCTATGGATTCCGGCGGTCCCAAAACCCTAGATTCAGACACTCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAACTATGGCGATTGGAAAGAACGCATCATTTTCCCCACTATTCTCGCAGGTCTGTGGATGTTTCCGGTGTCTCTCAAGAACGACCTAAAAATTCATCCATGTTTTATATATTCTCTTTTCTGCAGGATTTGTTGGGGGAGGTGCCGGACTAGTGTCCAAGCATCGGAAAGTTCATGGTCTGGCAAATATTTCTGCGACTTATGCTACGAATTTGTCCATTGTCGCTGCTTGCTACTGTGGTAATTTTTTTTCCTTGATGCTCCAAATTTTGCTTATGAAAGCTTTTATTGTAATTGGATTTGTTGAATGTTACTTTAATTAGGAAACTGTGTAGTCTGCTGCTTATTTAAGAAGATTAGGGCGTTAACGAATAACGATGAGAATGGAAATGTTTTTAGCTTGTTATATTGCCCGTCCTTTAGGGTTTATTATTTTTCTGATGATGGACAACGTGGATGTTGGATCACAATTTAAAGTTTCATTTGGATCGAAATTATATAGTTTCACATTGGTGTGGTGGTGAGTTGTAGAAGTCTGTTTCGATGGTCAAGTCATCAACTCATTGTGGAAGAGATGATTCATTAGAGTTAGGGATGAACATAGGAGGTAGAATTTGGGCACTCGTTGTATGATACATACCTTTCCTGAATTGGGTATTCTATTTATAGGAGCTTATTATTGGGTTGGATTATTTCAACCTTTATCAAGTGACCTGAACAAGTGAAATGATTTTGGCATGTGATGGTGTAGCTTTTGCAACCCTTGATATAGCGATGTACTTTGTCAAAATGATCGTAATCAACTTTGAATTCCATTTACTATTTCCGAGTAGTTTCTCTAAGTGCACCTAGGTGTGCGCCTATGGTGCAAGGCGGCATGGGGTTCACTTCGAAGCAATGACGAGCACTTTCACCATGGGGCTCACCATTGTGTGCCATTATGTATCCATACTGTTATTATGGGGAGGTGAGTTCCTTTGAGAGACTAATTGGCAGACGAAGGCAGAGAGATGTAAGCAAAGAGGAATAAACTAGTAGTTGTCAAACAGCCTTGATGTCCTACTTTCCTGCCTCCTAGCTACCACTGAAGCTCGAGACATCAACACAAAACTGTGACGGGTTTCTTCTTTTAACCATTGTTCGATTACTCTTAGTTCCTTCTCAATTTCCATGAGATTTCTTCTTTAGATTGATAGAGAGGTGAAAGAGCTTCATTTTCATATTATTTCCTTCCAATTTTTGTTTGGCACTTACTCCTCACAGACTCTCAAGTCTAGATCAACAACTTCCTCTCCATTTTTAACATCATCATGAACTATGCTCACAAGGACAACAGGCTCTGTTTTTTTGGGAATTCTGAGCTGTGGAGTTTAGCTATGTTTATTTAATACTTTGTTCTAGATCTTTTAGGGTTGATCTTCGTAGTTATGCCAGAATTTGTGACTTTCAACTGTCGGCCTAGTGTTAAGGGTATGGCGTAGCCTTTTCCGGCAGTATATTTCTTTTCCAGGATTGTTCTATTTTCATAGCTACTGCTATTGCTGCTTGTGCTGTTATTTTCTAATGAACGACTTTTTCCAACTTAAAAGAAAGTTGGAGTAGTGCTTCCAGAAACAATGGAAATTTTTGTTTTATTCAATTAAAAAACAGTTTTGTTTCCAACAAGATGAATATTGAATGAAAAAAAAAAAACTAAGTTCATACATTTAACAGGAGCACGCGAGTTTGTTAGAGTTTCTCGAAGGTCAGAACCTGACGACCTTATGAACTCTGCAATAGCAGGGTTCGGGACGGAGCTCTTCTTGGACGCCTTCAAGGTTAATTAACTCCACATCCCTCACTCTCACATGTACAGAAGCAAGTCTGTCTTTTTTTATCTTGGACTTAGAATGAGTCAAGGAAAAGATAGAAGGATGTTTTTATAATTTGATGCTGTTGAATGAGGGAGAGCCTTGCTTAGGTTGAACTAGAACTTGATGATTCATAGGGTACACAAATGGGTAGAGATGAAATATTATGAATCTACAGCGTATATTCTCTTTTCAGGTGGTCGGCTCGGCTCTGTTCGATACTCAATAATGTTCACCGTCGCTGGGACAGCAATAGATTACGCCACACTCAAACTAAAACCTGTTTTCAGAAGCTACAAAGAAACAATACTCGAAGAAAGTAGTAGCTGGATGAAATTACCCGAATGGTCCCCGATCCAAGTACTGGACAAGGAAGCTTTAGCCGCTAAACAAGCTCGGGAGCAACAGCTCTACGCACAGAGGGTACTCGGGCAAGTAAACGAAAAGGATCCTTGAAACATTTTTATCTCCCCATATATCAAGGAAGGAAAGGATCCAAAGTTTCTTGGATTCTTCAATATACAAGTAAAGATTATAACCATATGGTGTGGATTATGATATAATAAGAAGAGAATTCTGATAGTTGACAATTTTGTTCTTTATGTTTAATTTCCTTTTCTCTGTTTAATTTCATAGGTCTGTTTACTTTGTGTTTCATTATCAATAAACTGATATTTCTCTTCCAAATTAAGAAATTAGCAGCAGAAAGAAGAATAAGAGCAAAAGTTGAAGATGATAGTTCCAGCAA

mRNA sequence

ATTTGGCGTCGGATGCTCTCGGAAGCCGCTATGGATTCCGGCGGTCCCAAAACCCTAGATTCAGACACTCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAACTATGGCGATTGGAAAGAACGCATCATTTTCCCCACTATTCTCGCAGGATTTGTTGGGGGAGGTGCCGGACTAGTGTCCAAGCATCGGAAAGTTCATGGTCTGGCAAATATTTCTGCGACTTATGCTACGAATTTGTCCATTGTCGCTGCTTGCTACTGTGGAGCACGCGAGTTTGTTAGAGTTTCTCGAAGGTCAGAACCTGACGACCTTATGAACTCTGCAATAGCAGGGTTCGGGACGGAGCTCTTCTTGGACGCCTTCAAGGTGGTCGGCTCGGCTCTGTTCGATACTCAATAATGTTCACCGTCGCTGGGACAGCAATAGATTACGCCACACTCAAACTAAAACCTGTTTTCAGAAGCTACAAAGAAACAATACTCGAAGAAAGTAGTAGCTGGATGAAATTACCCGAATGGTCCCCGATCCAAGTACTGGACAAGGAAGCTTTAGCCGCTAAACAAGCTCGGGAGCAACAGCTCTACGCACAGAGGGTACTCGGGCAAGTAAACGAAAAGGATCCTTGAAACATTTTTATCTCCCCATATATCAAGGAAGGAAAGGATCCAAAGTTTCTTGGATTCTTCAATATACAAGTAAAGATTATAACCATATGGTGTGGATTATGATATAATAAGAAGAGAATTCTGATAGTTGACAATTTTGTTCTTTATGTTTAATTTCCTTTTCTCTGTTTAATTTCATAGGTCTGTTTACTTTGTGTTTCATTATCAATAAACTGATATTTCTCTTCCAAATTAAGAAATTAGCAGCAGAAAGAAGAATAAGAGCAAAAGTTGAAGATGATAGTTCCAGCAA

Coding sequence (CDS)

ATGCTCTCGGAAGCCGCTATGGATTCCGGCGGTCCCAAAACCCTAGATTCAGACACTCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAACTATGGCGATTGGAAAGAACGCATCATTTTCCCCACTATTCTCGCAGGATTTGTTGGGGGAGGTGCCGGACTAGTGTCCAAGCATCGGAAAGTTCATGGTCTGGCAAATATTTCTGCGACTTATGCTACGAATTTGTCCATTGTCGCTGCTTGCTACTGTGGAGCACGCGAGTTTGTTAGAGTTTCTCGAAGGTCAGAACCTGACGACCTTATGAACTCTGCAATAGCAGGGTTCGGGACGGAGCTCTTCTTGGACGCCTTCAAGGTGGTCGGCTCGGCTCTGTTCGATACTCAATAA

Protein sequence

MLSEAAMDSGGPKTLDSDTPLSSSSSSSSSNYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLANISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFLDAFKVVGSALFDTQ

Homology

[Close]

BLAST of Carg05057 vs. NCBI nr
Match: XP_022960027.1 (uncharacterized protein LOC111460899 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 111/118 (94.07%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MLSEAAMDSGGPKTLDSDTPL---SXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVS 60
           MLSEAAMDSGGPKTLDSDTPL    XXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVS
Sbjct: 1   MLSEAAMDSGGPKTLDSDTPLXXXXXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVS 60

Query: 61  KHRKVHGLANISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           KHRKVHGLANISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGT   L
Sbjct: 61  KHRKVHGLANISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALL 118

[Close]

BLAST of Carg05057 vs. NCBI nr
Match: XP_008458054.1 (PREDICTED: uncharacterized protein LOC103497594 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 4.9e-38
Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           MDS  PKT +SDTP S         YG WKERI +PT+LAG VGGGAGL+SK+RK+HGLA
Sbjct: 1   MDSPDPKTPNSDTPFS---SSTSSDYGGWKERIFYPTLLAGLVGGGAGLLSKYRKIHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGT   L
Sbjct: 61  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALL 106

[Close]

BLAST of Carg05057 vs. NCBI nr
Match: XP_022157212.1 (uncharacterized protein LOC111023975 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           MDS  PKTLDS+    XXXXXXXXXYGDWK+RI FPT+LAGFVGGGAGLVSK+RKVHGLA
Sbjct: 1   MDSETPKTLDSEXXXXXXXXXXXXXYGDWKQRIFFPTLLAGFVGGGAGLVSKYRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYA NLSIV ACYCGAREFVRV R+SEPDDLMNSAIAGFGT   L
Sbjct: 61  NISATYAANLSIVTACYCGAREFVRVYRKSEPDDLMNSAIAGFGTGAIL 109

[Close]

BLAST of Carg05057 vs. NCBI nr
Match: XP_004149781.1 (PREDICTED: uncharacterized protein LOC101211202 [Cucumis sativus] >KGN44634.1 hypothetical protein Csa_7G352470 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           MDS  PKT +SDTP           YG WKERI +PT+LAG VGGGAGL+SK+RKVHGLA
Sbjct: 1   MDSPDPKTPNSDTP--PFSSSTSSDYGGWKERIFYPTLLAGIVGGGAGLLSKYRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGT   L
Sbjct: 61  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALL 107

[Close]

BLAST of Carg05057 vs. NCBI nr
Match: XP_006443560.1 (uncharacterized protein LOC18049186 isoform X1 [Citrus clementina] >XP_006479239.1 uncharacterized protein LOC102630447 isoform X1 [Citrus sinensis] >ESR56800.1 hypothetical protein CICLE_v10022385mg [Citrus clementina])

HSP 1 Score: 142.9 bits (359), Expect = 7.6e-31
Identity = 73/109 (66.97%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           M  G  K L+ + P +            WKERII PTILAG VGG +GL+SKHRKVHGLA
Sbjct: 1   MSQGDSKKLEGEAPSASSSS------DGWKERIIVPTILAGLVGGVSGLLSKHRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIV ACYCGAREFVRVSR++EPDDL+NSAIAGFG+   L
Sbjct: 61  NISATYATNLSIVTACYCGAREFVRVSRKTEPDDLVNSAIAGFGSGALL 103

[Close]

BLAST of Carg05057 vs. TAIR10
Match: AT3G25120.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-20
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 37  ERIIFPTILAGFVGGGAGLVSKHRKVHGLANISATYATNLSIVAACYCGAREFVRVSRRS 96
           +R++  ++LAG +GGGAGLVSKHR  H   NI   YA N +IVA CYCGARE VR++RRS
Sbjct: 31  KRVLITSLLAGVIGGGAGLVSKHRIAH--PNIPTVYAANFAIVAGCYCGARESVRITRRS 90

Query: 97  EPDDLMNSAIAG 109
           E DDLMNSAI G
Sbjct: 91  EHDDLMNSAIGG 100

[Close]

BLAST of Carg05057 vs. TrEMBL
Match: tr|A0A1S3C726|A0A1S3C726_CUCME (uncharacterized protein LOC103497594 OS=Cucumis melo OX=3656 GN=LOC103497594 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-38
Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           MDS  PKT +SDTP S         YG WKERI +PT+LAG VGGGAGL+SK+RK+HGLA
Sbjct: 1   MDSPDPKTPNSDTPFS---SSTSSDYGGWKERIFYPTLLAGLVGGGAGLLSKYRKIHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGT   L
Sbjct: 61  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALL 106

[Close]

BLAST of Carg05057 vs. TrEMBL
Match: tr|A0A0A0K6T5|A0A0A0K6T5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G352470 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           MDS  PKT +SDTP           YG WKERI +PT+LAG VGGGAGL+SK+RKVHGLA
Sbjct: 1   MDSPDPKTPNSDTP--PFSSSTSSDYGGWKERIFYPTLLAGIVGGGAGLLSKYRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGT   L
Sbjct: 61  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALL 107

[Close]

BLAST of Carg05057 vs. TrEMBL
Match: tr|V4TYH9|V4TYH9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022385mg PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 73/109 (66.97%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           M  G  K L+ + P +            WKERII PTILAG VGG +GL+SKHRKVHGLA
Sbjct: 1   MSQGDSKKLEGEAPSASSSS------DGWKERIIVPTILAGLVGGVSGLLSKHRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIV ACYCGAREFVRVSR++EPDDL+NSAIAGFG+   L
Sbjct: 61  NISATYATNLSIVTACYCGAREFVRVSRKTEPDDLVNSAIAGFGSGALL 103

[Close]

BLAST of Carg05057 vs. TrEMBL
Match: tr|A0A2H5NIS0|A0A2H5NIS0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_049170 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.6e-31
Identity = 73/109 (66.97%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 7   MDSGGPKTLDSDTPLSXXXXXXXXXYGDWKERIIFPTILAGFVGGGAGLVSKHRKVHGLA 66
           M  G  K L+ D P +            WKERII P ILAG VGG +GL+SKHRKVHGLA
Sbjct: 1   MSQGDSKKLEGDAPSASSSS------DGWKERIIVPAILAGLVGGVSGLLSKHRKVHGLA 60

Query: 67  NISATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTELFL 116
           NISATYATNLSIV ACYCGAREFVRVSR++EPDDL+NSAIAGFG+   L
Sbjct: 61  NISATYATNLSIVTACYCGAREFVRVSRKTEPDDLVNSAIAGFGSGALL 103

[Close]

BLAST of Carg05057 vs. TrEMBL
Match: tr|B9GQL5|B9GQL5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G246000v3 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 34  DWKERIIFPTILAGFVGGGAGLVSKHRKVHGLANISATYATNLSIVAACYCGAREFVRVS 93
           +WKERI+ PT+LAG  GGG GLVSKHRKVHGLANIS TYATN SIV  CYCGAREFVRV 
Sbjct: 27  NWKERILIPTLLAGITGGGVGLVSKHRKVHGLANISTTYATNFSIVTGCYCGAREFVRVV 86

Query: 94  RRSEPDDLMNSAIAGFGTELFL 116
           R+SEPDDL+NSA+AGFG+   L
Sbjct: 87  RKSEPDDLVNSAVAGFGSGALL 108

The following BLAST results are available for this feature:

BLAST of Carg05057 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960027.1	2.0e-47	94.07	uncharacterized protein LOC111460899 [Cucurbita moschata]	[more]
XP_008458054.1	4.9e-38	77.06	PREDICTED: uncharacterized protein LOC103497594 [Cucumis melo]	[more]
XP_022157212.1	1.1e-37	83.49	uncharacterized protein LOC111023975 [Momordica charantia]	[more]
XP_004149781.1	1.9e-37	77.06	PREDICTED: uncharacterized protein LOC101211202 [Cucumis sativus] >KGN44634.1 hy...	[more]
XP_006443560.1	7.6e-31	66.97	uncharacterized protein LOC18049186 isoform X1 [Citrus clementina] >XP_006479239...	[more]

BLAST of Carg05057 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25120.1	1.5e-20	63.89	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

BLAST of Carg05057 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05057 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C726\|A0A1S3C726_CUCME	3.3e-38	77.06	uncharacterized protein LOC103497594 OS=Cucumis melo OX=3656 GN=LOC103497594 PE=...	[more]
tr\|A0A0A0K6T5\|A0A0A0K6T5_CUCSA	1.2e-37	77.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G352470 PE=4 SV=1	[more]
tr\|V4TYH9\|V4TYH9_9ROSI	5.0e-31	66.97	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022385mg PE=4 ...	[more]
tr\|A0A2H5NIS0\|A0A2H5NIS0_CITUN	6.6e-31	66.97	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_049170 PE=4 SV=1	[more]
tr\|B9GQL5\|B9GQL5_POPTR	2.1e-29	76.83	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G246000v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042721	mitochondrial inner membrane protein insertion complex

Vocabulary: **Biological Process**
Term	Definition
GO:0045039	protein import into mitochondrial inner membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR039175	TIM22

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein import into mitochondrial inner membrane
cellular_component	GO:0042721	mitochondrial inner membrane protein insertion complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05057-RA	Carg05057-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR14110:SF10	SUBFAMILY NOT NAMED	coord: 7..115
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 7..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05057	Cla014915	Watermelon (97103) v1	carwmB0079
Carg05057	Csa7G352470	Cucumber (Chinese Long) v2	carcuB0095
Carg05057	MELO3C021082	Melon (DHL92) v3.5.1	carmeB0083
Carg05057	ClCG09G008610	Watermelon (Charleston Gray)	carwcgB0080
Carg05057	CSPI07G14640	Wild cucumber (PI 183967)	carcpiB0099
Carg05057	Cucsa.077990	Cucumber (Gy14) v1	carcgyB0093
Carg05057	CmaCh08G002350	Cucurbita maxima (Rimu)	carcmaB0112
Carg05057	Lsi02G021210	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05057	Cp4.1LG17g11180	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05057	CsGy7G013130	Cucumber (Gy14) v2	carcgybB0095
Carg05057	MELO3C021082.2	Melon (DHL92) v3.6.1	carmedB0084
Carg05057	CsaV3_7G026360	Cucumber (Chinese Long) v3	carcucB0102
Carg05057	Cla97C09G171380	Watermelon (97103) v2	carwmbB0085
Carg05057	Bhi09G001083	Wax gourd	carwgoB0098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05057	Silver-seed gourd	carcarB009
Carg05057	Cucurbita maxima (Rimu)	carcmaB0104
Carg05057	Cucurbita moschata (Rifu)	carcmoB0112
Carg05057	Cucurbita moschata (Rifu)	carcmoB0119
Carg05057	Cucurbita pepo (Zucchini)	carcpeB0116