Carg05056 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05056
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor-like protein
Location	Cucurbita_argyrosperma_scaffold_060 : 1088632 .. 1094502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTTCTTCTCTCTCTCTGCAACACCACCATGTCACCAGTTTACCACCTTCTCTGAGCCCAAAAAACCCACAAAAATGCTGCAATAATATCAATCCCATTCCAAATTTCTTGTTCTATTGAGTTTTCCGATGCATGTTCTTCGTTTGCACATTGAGTTCCTCAACCCTGTTCTTGTTTTTCCTCTTCAATTCTTCAATTGGTCTCTGATTCTTTGAAATCTCTGTTTCTTGACCCTGTTTATCCGCCATGGTTGCTGTTTTTTCAGGTATATTACTGCACATTTGAGTTGCTTTGTTCTTTAATGGCTTGCCCTTTTGTTTGCTTCACTTGGGTGTTTCCATGGCTGCCTCATTTGAGCTTTGTGCGATGGTTTTTGTGGTTTTCTCTGCTTTTTCCTTTCTGGGTCTGTCTTGTTTTTGGTGTTTGGCTTTGCATTTGGGCGTTTGAGCAATTGGGGGTTCCCTTGTTTTTGGCCTCTCCTACAAGAAATGGTGGTGGTTGGTTGCTGGGGGGGTTGGGTTGACTTATTTCTTGAGAGAGATAAGGACTCACTTGGTTTTGCTTTTGAATTAGTGATATGAAAATTGATAGATGCTCAAGGTTTCTGTCATTCCCTTTTTCTTTCTTTGTTTTCTTCTTTTCTGGAGATTGGAGTTCTTGTTCTTCAGTGTTCATTGTGCTGAAACTCATATGATTTTATGTTATCGTGCTTGCATACTGCGTTGTTGTGAGATCCCACGTCGATTGGGGAGAAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGAAGAAGCGTTTTAAGAACCTTGAGGGGAAGTTCGAAAGGGAAAATCTAGAGAGGACAATATCTGGCTAACGGGGGGCTTGAATCGTTACTTTGTTTGAGTTCTTGCCAAATTTGATGGAATTTGTAAATCCTTTTAGAGAATACTGAGATTTGAAATGAACAGCTAGTTGTTTTGTGTTTTCTTCTCATTGTTAAGGATTGGTTTAGAAATGGGAGTTAAATTTGGGTTACTAGTTTTGGAGATTGTGTGCCTTGTGGGGTGCTTTGGGACTTCAATCATGTTGGCTAGCTCGATGATTTTGTTAGTAACTTTCGTGTATTTGTCGATGTAAAACGTGTTCCGTGTACCATTTAGCCTTCCTCCTCTCTTACTACCTTCGTTTTCCTTTCTTTTAAACATATTTTCTTGTGTTCTTTGATCCGTCGTGTAATAGCCTAAGCTCACTGCTAGTAGATATTGTCCTATTTGAGTTTTTCCTTTTGGGCTTTCCTTCAAGGTTTTTAAAACGTGTCTACTAGGGAAAGATTTCCATACCCTTATAAAAAATGTTTCGTTCTCCTCCCCAAACGATGTGGGATCTCACAATCCACCTCCCTTTGGGCCCAGCGTCCTCGCTTGCATACCGCTTGGTGTCTAGCTCTGATACCATTTGTAACAGCTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTTCCTTTCGGGCTTTCTCTCAAGTTTTTTAAAATACGTCTATTAAGGAGAGGTTTCCACACCCTTATAAAGAACGTTTCGTTCTCCTCCTCAATCGATGTGGGATCTCACAATCCACTCTCCTTTAGGGCCCATCGTCTTCGTTGGTACACCGCTCAGTGTCTAGCTTTGATACCATTTGTAACAACCCAACTCCACTGCTATTAGATATTGTCCTCTTTGGGATTTTCCTTTCGGGATTCCTCTCAAGGTTTTTAAAATTCGTTCTCCTCCCCAAACGATGTGGGATCTCACAATCCACCTCCCTTTGGGGCCCAGTGTCCTCGCTTGCATACCGCTTTGTGTCTAGCTCTGATATCATTTGTAACAGCCCAAGCCTACTGCTAGCAGATATTGTCCTTTTTGAGCTTTTACTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAGAGGTTCTCACACTCTTATAAACAATGTTTCGTTCTCCTCCCAATCGATGGGGATCTCGCACATCATCTTCTCTTATAAACAATGTTGCTACTCACCAACTTTATCAATATTTTTGGAGTCTTCAGGTGCTCACAACAATGGTTAATATTCTCTGTATAGGATCAGAGGTTACATTCAAAATTTGACTGCAACAAATTGTCACATACATTCTGCACGACGTTACGATTGATATCAACTATGGTGAGCTTAAGACGGCGCAGGCTCTTGGGACTATGCGCTGGTATGTTTGCATATTCTCGTGAGATAACGGGTTGTTTGTTGTTTCTTTCCGAGCTCGCTACGTTCTTAATCCATTTGTTTAAAACTGTTAATTGAAATTTCCTGCTACATTTCAGGGAAAAGCTCATCTGTAGCTTCACTTCCTAAGTTTTCAGAAAACGGAATCGCTCTCGAAAATCCTAGTCCGAGTAGCAAATTTGTCACCGTGCATCCCACGTCTTCTGATGATGTTCACATCACAGATAGGGTACGTTCATATGATTGTGTTAACATTTATACAAGTTATCTCGTAAGCAAGTCGGTCTCGTTTTTAGATTTCTACTAAGTTTTCCCGATTTCATTGCTGAACGTTGACATTCGAAATGATATTTAGATCTAGATAACTTCATTGGTTAAGCTTCCTGGTTTTTCCTGATAAAAGTCAGTGAAATATTTCTGCATTTCATTCTTTACATGTTACTTGAGATAGTGGTTTGAGAATCTTAGTGTAACGCCCCAGATCCACCGCTAGCAGACATTGTCCTCTTTGGGCTTTCCCGTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCCAGGGGAAGGTTTCCACACCCTTATAAAGGGTGGTTTGTTCTCCTCGCCAACCAACGTGGGACATCACAATCCACCCCCCCTTTGGGGCCCAGCGAGGCACACTTCCCTTCCTCCCATCGATGTGGGACCGCCCCCAAATCCACCCCCTTTGGGGCCCAGTGCCCCTACTAGCACACCGTCTCATGTCTACCCCCTCTTCAGGGAACAACAAGAAGGCTGACACATAGTCCGGTGTCTAGCTCCGATACCATTTGTAACGCCCCAGATCCACCACTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGAGCTTCCCCTCAAGGCTTTAAAACGTGTCTGCCAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTATTCTCCTCCCCAACCAACGTGGGACATCACACTTAGTTCATAACATATGAAGATCTATGAAAAATCTGCATCTAAATCGACCACTTAGGTATGTCGAGTAAAATTCCGATATTTAGCATCGAGTTTATGTTTTCTGGTTCATTATATCTGCTTCTCGAGCACGTGGATTTATAATCTGACTGTTGTTTTCCGAACATCGTCTTTTCTTACAGAGCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGACCTCGCTGAAAGAACAATCCAATCAGCCTATCTCAGGTTATCTGATTATGAAATGTGTTTATCAGATGATCATAGCTTTGTTGTTGTTTATGGCTTGCTTTTGACATATAGATTAGTGTATGTATTGATCAGGATGCTTATTTTTGCACTGTTTTGAACACTTTTGATGTAAGCGAAGGCACTGTCGGTTTCGTATTCAATAGCGATTTGCAGTTGGCACGACGAACGACATCGTGACTGATAGGAAGGCCATTAGAAGATAATTAGGATATTTACGGTATATTAGTGAATAGTTTGGACGTTAGTTATGTTATTTGGTTACAAATAGAGAGAGTGGGAAAGGGGGAACGAAATATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGCAAATGCGTTTTAAAACCGTGAGGCGGATAGTATCTGCTAGCGGTGGACTTGGGTTGTTATAAATGGTACCAGAGGCAGACACCGGGTGATGTGCCAGCGAGAATGCTGGGCACCCAAGAGGGGTGGATTGTGGGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAACCGTGAGGCGGATAGTATCTGCTAGCGGTGGACTTGGGCTGTTATAAATGGTACCAGAGCCAGACACTGGGGTGATGTGTCAGCGAGGATGCTAGGCTCCCAAGAGGGGTAGACTGTGGGATCCCGCATTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAATCTCTCCCTGGCATACACGTTTTTAAACCATGAGGTTGATGGAGATACGTAACGGGGCCAAAGTGGACAATATCTGTTAGTGGTGGGCTTGGGCTGTTATATTACTGATTCAGTCGGTTTAGGGCTCGAGTGATCACAAGATAGGGAAGGTCCAAGTACCTCGAATTATCTTTTACATTGCAATATAGTTTGGGTTGTATCAATCACGACCACTCGTAAGACACTTGTTTTCGGTCTCACCCCTATGTCATTGTGCACAATGTTCGAGTTCGAGTTCGTGCATTTCATCTAGAATACATGGACTTGTGTTTGTAGGGCATCCACTAAAACATCGGAAGAGACATAGGAGAAAGAACTCTCATAATCAAGAGCTATCAATCATGAGGGGCGTCTACTTCAAGAACATGAAATGGCAGGCTGCAATTAAAGTCGACAAGAAACAGATCCATTTGGGGACGTTTGGTTCCCAAGAAGAGGCTGCTCATTTGTACGACAGGTATTCGTTTTTCAAATCGCTCATTTAATTTTTTTAAAAATATTCATTCCGAGCGATAAACAACATATGAGAGAGGAGTCCCACGTCGGCTAGTCATGGGGTTGATCTTGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTCGGGAAACCGAAAGCAAAGCCATGAGAGCTTATGCTTAAAGTGGACAATATCGTACCGTTGTGGAGGTTCGTGATTCCTAACATGGTATCAGAGCCATGCCCTTAACTTAGCCATGTCAATAGAATCCTGTGAGCCTCGAAAGTATAGTCAAAGGTGACTCAAGGGTCGAGCAAAGGGTGTACTTTGTTCGAGTTGTTCGAGGGCTCCAGAGAAGGAGTTGAGACTCGATTAAGGGGAGGTTGTTCGAGGGTTCCATAGGCCTCAGGGGAGACTCTATGGTGTACTTTGTTTGAGGGGAGGATTGTTAGGAGAGGTGTCCCACATCGACTAGTCAAGGGGTTGATCATGGGTTTATAAGTAACGAATATATCTCCATTGGTTCGAGGCCTTTTGGACAAACCGAAAGTAAACCACGAGAGCTTATGTTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTAGTACTGTATATCATTTAGTTCATTTACTTATCAAGTTGTTTCGGGTCGTATTAGCTACCATAAGCTCACTAGGCTCTTGGTTTTGCAGAGCTGCTTTTGTATGTGGACGTGAACCAAATTTCGAGCTCTCCGAGGAGGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCTTAGCAATGACTCGCCACGCAATTACGAACAAAAGTAGTCGTCGTGCTTTCCTCTCAAACTCTTCAATTCCCTTTTTCTCAGTTTTTCACTCGTTACATTTGATTCGTTTAATGTCTTTCAGAGCACAAGAGACTCAACGCAGGATCACCAACCAAGCCTGGATCTTCGTCGGTCGACGACACCGAGTTCAAGCATAGGTTCATCGGGTTTCCCGTGCGGGAAGACATTAACCGTTCCATCACTTGAGCTAGCCTTTGGCTCAAGAGAGGTTAGCCAAATTGGTTGAACCTCCATTGAATAGCCCCAAGTAAATGTGTTTTTAGGCAAATTCTTATATCTTTGGCCCAATAAG

mRNA sequence

TCTCTTTTCTTCTCTCTCTCTGCAACACCACCATGTCACCAGTTTACCACCTTCTCTGAGCCCAAAAAACCCACAAAAATGCTGCAATAATATCAATCCCATTCCAAATTTCTTGTTCTATTGAGTTTTCCGATGCATGTTCTTCGTTTGCACATTGAGTTCCTCAACCCTGTTCTTGTTTTTCCTCTTCAATTCTTCAATTGGTCTCTGATTCTTTGAAATCTCTGTTTCTTGACCCTGTTTATCCGCCATGGTTGCTGTTTTTTCAGGTGCTCACAACAATGGTTAATATTCTCTGTATAGGATCAGAGGTTACATTCAAAATTTGACTGCAACAAATTGTCACATACATTCTGCACGACGTTACGATTGATATCAACTATGGTGAGCTTAAGACGGCGCAGGCTCTTGGGACTATGCGCTGGGAAAAGCTCATCTGTAGCTTCACTTCCTAAGTTTTCAGAAAACGGAATCGCTCTCGAAAATCCTAGTCCGAGTAGCAAATTTGTCACCGTGCATCCCACGTCTTCTGATGATGTTCACATCACAGATAGGAGCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGACCTCGCTGAAAGAACAATCCAATCAGCCTATCTCAGGGCATCCACTAAAACATCGGAAGAGACATAGGAGAAAGAACTCTCATAATCAAGAGCTATCAATCATGAGGGGCGTCTACTTCAAGAACATGAAATGGCAGGCTGCAATTAAAGTCGACAAGAAACAGATCCATTTGGGGACGTTTGGTTCCCAAGAAGAGGCTGCTCATTTGTACGACAGAGCTGCTTTTGTATGTGGACGTGAACCAAATTTCGAGCTCTCCGAGGAGGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCTTAGCAATGACTCGCCACGCAATTACGAACAAAAAGCACAAGAGACTCAACGCAGGATCACCAACCAAGCCTGGATCTTCGTCGGTCGACGACACCGAGTTCAAGCATAGGTTCATCGGGTTTCCCGTGCGGGAAGACATTAACCGTTCCATCACTTGAGCTAGCCTTTGGCTCAAGAGAGGTTAGCCAAATTGGTTGAACCTCCATTGAATAGCCCCAAGTAAATGTGTTTTTAGGCAAATTCTTATATCTTTGGCCCAATAAG

Coding sequence (CDS)

ATGGTGAGCTTAAGACGGCGCAGGCTCTTGGGACTATGCGCTGGGAAAAGCTCATCTGTAGCTTCACTTCCTAAGTTTTCAGAAAACGGAATCGCTCTCGAAAATCCTAGTCCGAGTAGCAAATTTGTCACCGTGCATCCCACGTCTTCTGATGATGTTCACATCACAGATAGGAGCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGACCTCGCTGAAAGAACAATCCAATCAGCCTATCTCAGGGCATCCACTAAAACATCGGAAGAGACATAGGAGAAAGAACTCTCATAATCAAGAGCTATCAATCATGAGGGGCGTCTACTTCAAGAACATGAAATGGCAGGCTGCAATTAAAGTCGACAAGAAACAGATCCATTTGGGGACGTTTGGTTCCCAAGAAGAGGCTGCTCATTTGTACGACAGAGCTGCTTTTGTATGTGGACGTGAACCAAATTTCGAGCTCTCCGAGGAGGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCTTAGCAATGACTCGCCACGCAATTACGAACAAAAAGCACAAGAGACTCAACGCAGGATCACCAACCAAGCCTGGATCTTCGTCGGTCGACGACACCGAGTTCAAGCATAGGTTCATCGGGTTTCCCGTGCGGGAAGACATTAACCGTTCCATCACTTGA

Protein sequence

MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSSVVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKRLNAGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT

Homology

[Close]

BLAST of Carg05056 vs. NCBI nr
Match: XP_022960022.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita moschata] >XP_022960023.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita moschata] >XP_022960024.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita moschata] >XP_022960025.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita moschata])

HSP 1 Score: 447.6 bits (1150), Expect = 2.6e-122
Identity = 225/228 (98.68%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLNAGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT 229
           RHAITNKKHKRL+AGSPTKPG+SSVDDTEFKHRFIGFPVRED+NRSIT
Sbjct: 181 RHAITNKKHKRLSAGSPTKPGASSVDDTEFKHRFIGFPVREDVNRSIT 228

[Close]

BLAST of Carg05056 vs. NCBI nr
Match: XP_023513796.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita pepo subsp. pepo] >XP_023513797.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita pepo subsp. pepo] >XP_023513798.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.9 bits (1143), Expect = 1.7e-121
Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLCAGKSSSVASLPKFSENGI  ENPSPSSKFVTVHPTSSDDVHITDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGITPENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLNAGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT 229
           RHAITNKKHKRL+AGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT
Sbjct: 181 RHAITNKKHKRLSAGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT 228

[Close]

BLAST of Carg05056 vs. NCBI nr
Match: XP_023004160.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004161.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004162.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima])

HSP 1 Score: 439.9 bits (1130), Expect = 5.3e-120
Identity = 222/228 (97.37%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLCAGKSSSV SLPKFSENGIA ENPSPSSKFVTVHPTSSDDVHITDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVTSLPKFSENGIAPENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLNAGSPTKPGSSSVDDTEFKHRFIGFPVREDINRSIT 229
           RHAITNKKHKRL AGSPTKPG+SSVD+TEFKHRFIGFPVRED+NRSIT
Sbjct: 181 RHAITNKKHKRLIAGSPTKPGASSVDNTEFKHRFIGFPVREDVNRSIT 228

[Close]

BLAST of Carg05056 vs. NCBI nr
Match: XP_022159022.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momordica charantia])

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 195/230 (84.78%), Postives = 208/230 (90.43%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLC+GKSS VA LPKFS+NG A ENPSPS+K VTVHP SSDDV++TDRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           VVNME +FA+A DLTS KEQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLNAGSPTKPGSSS--VDDTEFKHRFIGFPVREDINRSIT 229
           RHAITNKKHKRL  GSP KPG+SS  +D T++KHRF GFP  ED N SIT
Sbjct: 181 RHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 230

[Close]

BLAST of Carg05056 vs. NCBI nr
Match: XP_022159021.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momordica charantia])

HSP 1 Score: 378.3 bits (970), Expect = 1.9e-101
Identity = 195/237 (82.28%), Postives = 208/237 (87.76%), Query Frame = 0


Query: 1   MVSLRRRRLLGLC-------AGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDV 60
           MVSLRRRRLLGLC       +GKSS VA LPKFS+NG A ENPSPS+K VTVHP SSDDV
Sbjct: 1   MVSLRRRRLLGLCSELFWDFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60

Query: 61  HITDRSSVVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVY 120
           ++TDRSSVVNME +FA+A DLTS KEQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVY
Sbjct: 61  NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY 120

Query: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKW 180
           FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKW
Sbjct: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW 180

Query: 181 EDFLAMTRHAITNKKHKRLNAGSPTKPGSSS--VDDTEFKHRFIGFPVREDINRSIT 229
           EDFLAMTRHAITNKKHKRL  GSP KPG+SS  +D T++KHRF GFP  ED N SIT
Sbjct: 181 EDFLAMTRHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 237

[Close]

BLAST of Carg05056 vs. TAIR10
Match: AT4G13040.3 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-45
Identity = 111/226 (49.12%), Postives = 136/226 (60.18%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKF----------SENGIALENPSPSSKFVT--VHPT 60
           MVSLRRRRLLGLC G +  V  LP            + N  A  NP P+    T  V   
Sbjct: 21  MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 80

Query: 61  SSDDVHITDRSSVVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSI 120
           + ++     RS  ++  S ++   D++ +   S  P    P K RK+HRRK  HNQE  +
Sbjct: 81  AIEERSRRTRSKHMHFRSDYS---DISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCL 140

Query: 121 MRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQEL 180
           MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LYDRAAF+CGREPNFELSEE  +EL
Sbjct: 141 MRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIREL 200

Query: 181 QKFKWEDFLAMTRHAITNKKHK--------RLNAGSPTKPGSSSVD 207
           ++  WE+FL  TR  ITNKK K        ++NA  P +P     D
Sbjct: 201 KQQSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMPHQPEEEEQD 242

[Close]

BLAST of Carg05056 vs. TAIR10
Match: AT5G17430.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 65  ESSFANALDLTSLK-----EQSNQPISGH-----PLKHRKRH------RRKNS-HNQELS 124
           E   A A DL +LK       +N P+S +      +KH  R       RRK+S  ++  S
Sbjct: 252 EEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGAS 311

Query: 125 IMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAAHLYDRAA 150
           I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 312 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAA 357

[Close]

BLAST of Carg05056 vs. TAIR10
Match: AT5G57390.1 (AINTEGUMENTA-like 5)

HSP 1 Score: 43.5 bits (101), Expect = 2.0e-04
Identity = 58/186 (31.18%), Postives = 81/186 (43.55%), Query Frame = 0


Query: 15  GKSSSVASLPKFSENGIALENPSPSSK--------------FVTVHP-TSSDDVHITDRS 74
           G SS V+S+ K   N +A+   SP+ K               VT H  T   + H+ D S
Sbjct: 165 GHSSEVSSVHKQQPNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNS 224

Query: 75  ---------------SVVNMESSFANALDLTSLK-----EQSNQPISGH-----PLKHRK 134
                             + E   A A DL +LK       +N PIS +      +KH  
Sbjct: 225 CRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMT 284

Query: 135 RH------RRKNS-HNQELSIMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAAH 150
           R       RRK+S  ++  S+ RGV  + ++ +WQA I      K ++LGTF +QEEAA 
Sbjct: 285 RQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAE 344

[Close]

BLAST of Carg05056 vs. Swiss-Prot
Match: sp|Q56XP9|ERFL1_ARATH (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-44
Identity = 111/226 (49.12%), Postives = 136/226 (60.18%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKF----------SENGIALENPSPSSKFVT--VHPT 60
           MVSLRRRRLLGLC G +  V  LP            + N  A  NP P+    T  V   
Sbjct: 1   MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 60

Query: 61  SSDDVHITDRSSVVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSI 120
           + ++     RS  ++  S ++   D++ +   S  P    P K RK+HRRK  HNQE  +
Sbjct: 61  AIEERSRRTRSKHMHFRSDYS---DISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCL 120

Query: 121 MRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQEL 180
           MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LYDRAAF+CGREPNFELSEE  +EL
Sbjct: 121 MRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIREL 180

Query: 181 QKFKWEDFLAMTRHAITNKKHK--------RLNAGSPTKPGSSSVD 207
           ++  WE+FL  TR  ITNKK K        ++NA  P +P     D
Sbjct: 181 KQQSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMPHQPEEEEQD 222

[Close]

BLAST of Carg05056 vs. TrEMBL
Match: tr|A0A0A0K8E3|A0A0A0K8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G352440 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.5e-97
Identity = 189/229 (82.53%), Postives = 203/229 (88.65%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLC+GKSS VA LPKFS++  A ENPSPS+  +T+HP SSDDV+I DRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDHETATENPSPSNILITLHPKSSDDVNIKDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           +VNMESSF NAL+ TSL EQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ
Sbjct: 61  IVNMESSFRNALEWTSLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLN---AGSPTKPGSSS--VDDTEFKHRFIGFPVREDIN 225
           RHAITNKKHKRL+     SP K G+SS  +D+TE KHRF   P+ EDIN
Sbjct: 181 RHAITNKKHKRLSVSAGSSPKKLGASSLQIDNTELKHRFNEAPLPEDIN 229

[Close]

BLAST of Carg05056 vs. TrEMBL
Match: tr|A0A1S3C6H0|A0A1S3C6H0_CUCME (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucumis melo OX=3656 GN=LOC103497593 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 2.7e-96
Identity = 184/229 (80.35%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRRRLLGLC+GKSS VA LPKFS++  A ENPSPS+K +T+HP SSDDV+I DRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDHETAPENPSPSNKLITLHPKSSDDVNIKDRSS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           +VNMESSF NAL+ TSL EQSNQPISG+PLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ
Sbjct: 61  IVNMESSFTNALEWTSLSEQSNQPISGYPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELS+EEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSDEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLNAGSPTKP-----GSSSVDDTEFKHRFIGFPVREDIN 225
           RHAITNKKHKRL+  + T P      S  +++TE KHRF   P+ EDIN
Sbjct: 181 RHAITNKKHKRLSVNAGTSPKKLEASSLQIENTELKHRFNESPLPEDIN 229

[Close]

BLAST of Carg05056 vs. TrEMBL
Match: tr|A0A1U8NX58|A0A1U8NX58_GOSHI (ethylene-responsive transcription factor-like protein At4g13040 OS=Gossypium hirsutum OX=3635 GN=LOC107952855 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.2e-63
Identity = 133/214 (62.15%), Postives = 159/214 (74.30%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRR+LLGLC+G SS    L +F +NG A  N S S+K VTVHP  SD +H+  + S
Sbjct: 1   MVSLRRRKLLGLCSGTSSFFTPLSRFFDNGNAPGNSSQSAKLVTVHPMPSDPIHMNGK-S 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           +  + S   N     S KE  NQP  G P+K RKRHRRK+  NQE  +MRGVYFKNMKWQ
Sbjct: 61  IPKVASGSPNVSGSGSSKEHHNQPFPGQPIKRRKRHRRKHVQNQEQCLMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGT GSQEEAAHLYDRAAF+CGREPNFELSEEEKQEL+KFKWE+FLA T
Sbjct: 121 AAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELSEEEKQELRKFKWEEFLAYT 180

Query: 181 RHAITNKKHK-RLNAGSPTKPGSSSVDDTEFKHR 214
           R +ITNKK+K RL    P K    +++++E+ ++
Sbjct: 181 RRSITNKKYKRRLGKVEPQKRSEPAMENSEWDNK 213

[Close]

BLAST of Carg05056 vs. TrEMBL
Match: tr|A0A0D2NBD2|A0A0D2NBD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G188300 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRR+LLGLC+G SS    L +F +NG A  N S S+K V+VHP  SD +H+  + S
Sbjct: 1   MVSLRRRKLLGLCSGTSSFFTPLSRFFDNGNAPGNSSQSAKLVSVHPMPSDPIHMNGK-S 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           +  + S   N     S KE  NQP  G P+K RKRHRRK+  NQE  +MRGVYFKNMKWQ
Sbjct: 61  IPKVASGSPNVSGSGSSKEHHNQPFPGQPIKRRKRHRRKHVQNQEPCLMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGT GSQEEAAHLYDRAAF+CGREPNFELSEEEKQEL+KFKWE+FLA T
Sbjct: 121 AAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELSEEEKQELRKFKWEEFLAYT 180

Query: 181 RHAITNKKHK-RLNAGSPTKPGSSSVDDTEFKHR 214
           R +ITNKK+K RL    P K    +++++E+ ++
Sbjct: 181 RRSITNKKYKRRLGKVEPQKRSEPAMENSEWDNK 213

[Close]

BLAST of Carg05056 vs. TrEMBL
Match: tr|A0A061DN51|A0A061DN51_THECC (Integrase-type DNA-binding superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002835 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.4e-62
Identity = 128/210 (60.95%), Postives = 155/210 (73.81%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60
           MVSLRRR+LLGLC+GKSS +  LP+F +NG A EN S ++K ++VHP  SD        S
Sbjct: 1   MVSLRRRKLLGLCSGKSSFLTPLPRFFDNGHAPENSSQNAKSISVHPMPSDFTGHIHGKS 60

Query: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120
           +  + S   N     S KE  NQP  G P+K RKRHRRK+  NQE  +MRGVYFKNMKWQ
Sbjct: 61  IAKVGSGSPNVSGSGSSKEHHNQPFPGQPIKRRKRHRRKHVQNQEPCLMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGT GSQEEAA LYDRAAF+CGREPNFELSEEEKQEL+KFKW++FLA T
Sbjct: 121 AAIKVDKKQIHLGTVGSQEEAARLYDRAAFMCGREPNFELSEEEKQELRKFKWDEFLAYT 180

Query: 181 RHAITNKKHKRLNAGSPTKPGSSSVDDTEF 211
           R +ITNKK+KR     P K    +++++++
Sbjct: 181 RRSITNKKYKRRLGAGPQKRSEPAIENSDW 210

The following BLAST results are available for this feature:

BLAST of Carg05056 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960022.1	2.6e-122	98.68	ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita mosch...	[more]
XP_023513796.1	1.7e-121	98.68	ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita pepo ...	[more]
XP_023004160.1	5.3e-120	97.37	ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxim...	[more]
XP_022159022.1	1.6e-103	84.78	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momo...	[more]
XP_022159021.1	1.9e-101	82.28	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momo...	[more]

BLAST of Carg05056 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13040.3	2.4e-45	49.12	Integrase-type DNA-binding superfamily protein	[more]
AT5G17430.1	1.2e-04	38.68	Integrase-type DNA-binding superfamily protein	[more]
AT5G57390.1	2.0e-04	31.18	AINTEGUMENTA-like 5	[more]

BLAST of Carg05056 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q56XP9\|ERFL1_ARATH	4.2e-44	49.12	Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis t...	[more]

BLAST of Carg05056 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8E3\|A0A0A0K8E3_CUCSA	2.5e-97	82.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G352440 PE=4 SV=1	[more]
tr\|A0A1S3C6H0\|A0A1S3C6H0_CUCME	2.7e-96	80.35	ethylene-responsive transcription factor-like protein At4g13040 OS=Cucumis melo ...	[more]
tr\|A0A1U8NX58\|A0A1U8NX58_GOSHI	5.2e-63	62.15	ethylene-responsive transcription factor-like protein At4g13040 OS=Gossypium hir...	[more]
tr\|A0A0D2NBD2\|A0A0D2NBD2_GOSRA	2.0e-62	61.68	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G188300 PE=4 ...	[more]
tr\|A0A061DN51\|A0A061DN51_THECC	3.4e-62	60.95	Integrase-type DNA-binding superfamily protein isoform 1 OS=Theobroma cacao OX=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05056-RA	Carg05056-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 108..165 e-value: 1.0E-4 score: 27.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 109..150 e-value: 5.0E-7 score: 29.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 91..163 score: 9.124
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 110..160 e-value: 1.2E-7 score: 33.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..206
None	No IPR available	PANTHER	PTHR32467	FAMILY NOT NAMED	coord: 1..224
None	No IPR available	PANTHER	PTHR32467:SF4	SUBFAMILY NOT NAMED	coord: 1..224
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 107..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05056	Cla014916	Watermelon (97103) v1	carwmB0079
Carg05056	Csa7G352440	Cucumber (Chinese Long) v2	carcuB0095
Carg05056	MELO3C021079	Melon (DHL92) v3.5.1	carmeB0083
Carg05056	ClCG09G008620	Watermelon (Charleston Gray)	carwcgB0080
Carg05056	CSPI07G14630	Wild cucumber (PI 183967)	carcpiB0099
Carg05056	Cucsa.078000	Cucumber (Gy14) v1	carcgyB0093
Carg05056	CmaCh08G002340	Cucurbita maxima (Rimu)	carcmaB0112
Carg05056	CmoCh08G002310	Cucurbita moschata (Rifu)	carcmoB0119
Carg05056	Lsi02G021200	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05056	Cp4.1LG17g11140	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05056	CsGy7G013120	Cucumber (Gy14) v2	carcgybB0095
Carg05056	MELO3C028860.2	Melon (DHL92) v3.6.1	carmedB0084
Carg05056	CsaV3_7G026330	Cucumber (Chinese Long) v3	carcucB0102
Carg05056	Cla97C09G171390	Watermelon (97103) v2	carwmbB0085
Carg05056	Bhi09G001084	Wax gourd	carwgoB0098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05056	Silver-seed gourd	carcarB009
Carg05056	Cucurbita maxima (Rimu)	carcmaB0104
Carg05056	Cucurbita moschata (Rifu)	carcmoB0112
Carg05056	Cucurbita pepo (Zucchini)	carcpeB0116