Carg05036 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05036
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Leucine-rich repeat protein kinase family protein
Location	Cucurbita_argyrosperma_scaffold_060 : 984373 .. 984510 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGGCGGCTGTTATTGCTATAAGGTGTGTAGAGAGAGATGCTTCATTAAGGCCTAATATTGGACAAGTCTTGGATGACCTTAAACAAGCTTATGATGCTCAAATTGCTTATCTTTCTACTTTTGGCCTTTAA

mRNA sequence

ATGAAAAAGGCGGCTGTTATTGCTATAAGGTGTGTAGAGAGAGATGCTTCATTAAGGCCTAATATTGGACAAGTCTTGGATGACCTTAAACAAGCTTATGATGCTCAAATTGCTTATCTTTCTACTTTTGGCCTTTAA

Coding sequence (CDS)

ATGAAAAAGGCGGCTGTTATTGCTATAAGGTGTGTAGAGAGAGATGCTTCATTAAGGCCTAATATTGGACAAGTCTTGGATGACCTTAAACAAGCTTATGATGCTCAAATTGCTTATCTTTCTACTTTTGGCCTTTAA

Protein sequence

MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL

Homology

[Close]

BLAST of Carg05036 vs. NCBI nr
Match: XP_023514133.1 (probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 46
           MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL
Sbjct: 866 MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 910

[Close]

BLAST of Carg05036 vs. NCBI nr
Match: XP_022960256.1 (probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita moschata])

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 46
           MKKAAVIAI CVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL
Sbjct: 866 MKKAAVIAISCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 910

[Close]

BLAST of Carg05036 vs. NCBI nr
Match: XP_023004808.1 (probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 46
           MKKAA+IAIRCVERDASLRPNIGQVLDDL QAYDAQIAYLSTFGL
Sbjct: 866 MKKAALIAIRCVERDASLRPNIGQVLDDLTQAYDAQIAYLSTFGL 910

[Close]

BLAST of Carg05036 vs. NCBI nr
Match: XP_004139634.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucumis sativus] >KGN44594.1 hypothetical protein Csa_7G339660 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.2e-12
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCVERDAS RPNIGQVL DLKQAYDAQ+AYLSTF
Sbjct: 879 MKKAALVAIRCVERDASQRPNIGQVLADLKQAYDAQLAYLSTF 921

[Close]

BLAST of Carg05036 vs. NCBI nr
Match: XP_016902217.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X1 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCV+RDAS RPNIGQVL DLKQAYDAQ AYLSTF
Sbjct: 882 MKKAALVAIRCVDRDASQRPNIGQVLADLKQAYDAQFAYLSTF 924

[Close]

BLAST of Carg05036 vs. TAIR10
Match: AT5G48740.1 (Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLS 42
           MKKAA IAIRCV RDAS RP+I +VL  LK+AY  Q++YL+
Sbjct: 849 MKKAASIAIRCVGRDASGRPSIAEVLTKLKEAYSLQLSYLA 889

[Close]

BLAST of Carg05036 vs. Swiss-Prot
Match: sp|C0LGV0|Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana OX=3702 GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLS 42
           MKKAA IAIRCV RDAS RP+I +VL  LK+AY  Q++YL+
Sbjct: 849 MKKAASIAIRCVGRDASGRPSIAEVLTKLKEAYSLQLSYLA 889

[Close]

BLAST of Carg05036 vs. TrEMBL
Match: tr|A0A0A0K6R0|A0A0A0K6R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G339660 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-12
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCVERDAS RPNIGQVL DLKQAYDAQ+AYLSTF
Sbjct: 879 MKKAALVAIRCVERDASQRPNIGQVLADLKQAYDAQLAYLSTF 921

[Close]

BLAST of Carg05036 vs. TrEMBL
Match: tr|A0A1S4E1W5|A0A1S4E1W5_CUCME (probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497546 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCV+RDAS RPNIGQVL DLKQAYDAQ AYLSTF
Sbjct: 882 MKKAALVAIRCVDRDASQRPNIGQVLADLKQAYDAQFAYLSTF 924

[Close]

BLAST of Carg05036 vs. TrEMBL
Match: tr|A0A1S3C6S9|A0A1S3C6S9_CUCME (probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497546 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCV+RDAS RPNIGQVL DLKQAYDAQ AYLSTF
Sbjct: 798 MKKAALVAIRCVDRDASQRPNIGQVLADLKQAYDAQFAYLSTF 840

[Close]

BLAST of Carg05036 vs. TrEMBL
Match: tr|A0A1S3C6C6|A0A1S3C6C6_CUCME (probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497546 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTF 44
           MKKAA++AIRCV+RDAS RPNIGQVL DLKQAYDAQ AYLSTF
Sbjct: 859 MKKAALVAIRCVDRDASQRPNIGQVLADLKQAYDAQFAYLSTF 901

[Close]

BLAST of Carg05036 vs. TrEMBL
Match: tr|A0A1U8P4P8|A0A1U8P4P8_GOSHI (probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107954911 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 1   MKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFG 45
           M+KAA++ +RCVERDAS RP I QVL +LK+AY  Q+AYL++ G
Sbjct: 863 MRKAALVTVRCVERDASRRPTIAQVLGELKEAYSLQLAYLASLG 906

The following BLAST results are available for this feature:

BLAST of Carg05036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514133.1	1.6e-15	100.00	probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita ...	[more]
XP_022960256.1	7.8e-15	97.78	probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita ...	[more]
XP_023004808.1	1.7e-14	95.56	probable LRR receptor-like serine/threonine-protein kinase At5g48740 [Cucurbita ...	[more]
XP_004139634.1	6.2e-12	88.37	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 ...	[more]
XP_016902217.1	2.3e-11	86.05	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740 ...	[more]

BLAST of Carg05036 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48740.1	1.7e-08	65.85	Leucine-rich repeat protein kinase family protein	[more]

BLAST of Carg05036 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C0LGV0\|Y5487_ARATH	3.1e-07	65.85	Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidop...	[more]

BLAST of Carg05036 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6R0\|A0A0A0K6R0_CUCSA	4.1e-12	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G339660 PE=4 SV=1	[more]
tr\|A0A1S4E1W5\|A0A1S4E1W5_CUCME	1.5e-11	86.05	probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X1 ...	[more]
tr\|A0A1S3C6S9\|A0A1S3C6S9_CUCME	1.5e-11	86.05	probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X3 ...	[more]
tr\|A0A1S3C6C6\|A0A1S3C6C6_CUCME	1.5e-11	86.05	probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X2 ...	[more]
tr\|A0A1U8P4P8\|A0A1U8P4P8_GOSHI	3.9e-07	61.36	probable LRR receptor-like serine/threonine-protein kinase At5g48740 isoform X1 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05036-RA	Carg05036-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05036	Cucumber (Gy14) v2	carcgybB0095
Carg05036	Cucumber (Gy14) v1	carcgyB0093
Carg05036	Cucurbita maxima (Rimu)	carcmaB0112
Carg05036	Cucurbita moschata (Rifu)	carcmoB0119
Carg05036	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05036	Wild cucumber (PI 183967)	carcpiB0099
Carg05036	Cucumber (Chinese Long) v2	carcuB0095
Carg05036	Cucumber (Chinese Long) v3	carcucB0102
Carg05036	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05036	Melon (DHL92) v3.5.1	carmeB0083
Carg05036	Melon (DHL92) v3.6.1	carmedB0084
Carg05036	Watermelon (Charleston Gray)	carwcgB0080
Carg05036	Watermelon (97103) v1	carwmB0079
Carg05036	Watermelon (97103) v2	carwmbB0085