Carg04985 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04985
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_060 : 646190 .. 648166 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTCTTACGACAGATACGAAGTTGTTGATGTTCTGTGCCAGAGTATGTACAGTAAGATATAAATCTCATTTTGGTACCAGATTTTTACATTGATTCAATACTTTCAAGTATTCCTAAACTTTAAAAATAATCATTTCGATCTGGATTGTTAATAATTTAGGTCTGCGGTGTTTTCGTTAGACGGTGTTTGTTAGTAGTGTCATCCTCCCCATTGGCTATATGGGTAGGTTGCCCCTCGCTGCTGCGTTTTGTTAGGCTATGGATTATAGGAACAAATGTAGTTGAGTTAGATAGCAGGCGGGTTACTTGTTTCATTGTACCGAGATGTGAGGTGCAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA

mRNA sequence

ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA

Coding sequence (CDS)

ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA

Protein sequence

MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAACQLFQQSSFGWEVKSRTQSLNLLMQSLCQRGQSELALHVFKEMDYQSCYPNRLSYLILMKGLCQDGKLHEAIHLLYSMFWRISRRGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCAMAIDLYNENETDQGDKVVSHMLAKGFWPPSSVYEAKAAALCKEGKVDDAVKVIEEETVKGSCVPTVALYNIVLNGLCRVGKSTVAMEFLKKMVKQVGLVADKETYSTLVHGLCRENRYTEACKLLEEMVIKSHWPCSNTFNTLIRGLCSVGKPYKAVMCLEEMISQGQLPELSVWNALVSSLCFNVADTDMWSKVVMIILGYAREPLIDTLGPVNARESPSQSSIHSTKGVDNEATFTGMRRSP

Homology

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BLAST of Carg04985 vs. NCBI nr
Match: XP_022959953.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959954.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959955.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata])

HSP 1 Score: 515.4 bits (1326), Expect = 2.4e-142
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR
Sbjct: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT
Sbjct: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ
Sbjct: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGDKV 320
           CAMAIDLYNENETDQGDKV
Sbjct: 301 CAMAIDLYNENETDQGDKV 319

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BLAST of Carg04985 vs. NCBI nr
Match: XP_023514107.1 (pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 514.2 bits (1323), Expect = 5.3e-142
Identity = 318/319 (99.69%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR
Sbjct: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT
Sbjct: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ
Sbjct: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKILKKGLK+PKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILKKGLKSPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGDKV 320
           CAMAIDLYNENETDQGDKV
Sbjct: 301 CAMAIDLYNENETDQGDKV 319

[Close]

BLAST of Carg04985 vs. NCBI nr
Match: XP_023004266.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004267.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004268.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004269.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004270.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima])

HSP 1 Score: 513.1 bits (1320), Expect = 1.2e-141
Identity = 317/319 (99.37%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR
Sbjct: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT
Sbjct: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ
Sbjct: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISR+GSGGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKILKKGLK+PKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILKKGLKSPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGDKV 320
           CAMAIDLYNENETDQGDKV
Sbjct: 301 CAMAIDLYNENETDQGDKV 319

[Close]

BLAST of Carg04985 vs. NCBI nr
Match: XP_016902498.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo] >XP_016902499.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 1.9e-123
Identity = 279/317 (88.01%), Postives = 299/317 (94.32%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPR+LTPT+LSQIIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYAAMINILGNSGR
Sbjct: 1   MTVRWPRILTPTYLSQIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           +SEMREV+DQM+ DSC+CKDS+FSFAIKTYASHGLLE+GISLFKSLG FNCT+RTQTFNT
Sbjct: 61  VSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFNCTNRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILLNESQL AACQLFQ+ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q
Sbjct: 121 LLEILLNESQLHAACQLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSY XXXXXXXXXXXXXXXXXXXXXXFWRISR+GSGGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYLXXXXXXXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKIL+KGLKAPKRAHY IDL+ CR +KLT+ EIK LINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGD 318
           CAMA+DLYNEN+TDQGD
Sbjct: 301 CAMAVDLYNENKTDQGD 317

[Close]

BLAST of Carg04985 vs. NCBI nr
Match: XP_004140638.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis sativus] >KGN46470.1 hypothetical protein Csa_6G095860 [Cucumis sativus])

HSP 1 Score: 439.5 bits (1129), Expect = 1.7e-119
Identity = 271/318 (85.22%), Postives = 291/318 (91.51%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           M++RWPR+LTPT LSQIIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYA MINILGNSGR
Sbjct: 1   MSIRWPRILTPTCLSQIIRKQNNPQTAYQLFKEAKCRYPDYRHNGPVYATMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           +SEMREV+DQM+ DSC+CKDS+FSFAIKTYASHGLLE+GISLFKS G FNCT+RTQTFNT
Sbjct: 61  VSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILL ESQL AACQLFQ+ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 121 LLEILLKESQLHAACQLFQECSYGWGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSY XXXXXXXXXXXXXXXXXXXX  FWRISR+G GGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYLXXXXXXXXXXXXXXXXXXXXSMFWRISRKGGGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKIL+KGLKAPKRAHY IDL+ CR S LT+ EIK LINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNSNLTIEEIKSLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGDK 319
           CAMA+DLYNEN+TDQGDK
Sbjct: 301 CAMAVDLYNENKTDQGDK 318

[Close]

BLAST of Carg04985 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-56
Identity = 121/317 (38.17%), Postives = 169/317 (53.31%), Query Frame = 0


Query: 3   VRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRIS 62
           VRWPR+LTP+ LSQI++KQ NP TA +LF EAK R+P+Y HNG VYA MI+ILG S R+ 
Sbjct: 4   VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVL 63

Query: 63  EMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLL 122
           EM+ VI++MK DSC+CKDS+F+  I+T++  G LE+ ISLFKSL  FNC + + +F+TLL
Sbjct: 64  EMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLL 123

Query: 123 EILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQSC 182
           + ++ ES+L+AAC +F++  +                                  +YQ C
Sbjct: 124 QEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGC 183

Query: 183 YPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGEIE 242
           YP+R SY                      X                              
Sbjct: 184 YPDRDSYRILMKGFCLEGKLEEATHLLYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 243

Query: 243 QAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCA 302
                 GKIL+KGLKAPKR ++ I+  +   S   +  +K L+ E LI+G IP  DSY A
Sbjct: 244 XXXXXXGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIPCLDSYSA 303

Query: 303 MAIDLYNENETDQGDKV 320
           MA DL+ E +  +G++V
Sbjct: 304 MATDLFEEGKLVEGEEV 320

[Close]

BLAST of Carg04985 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-13
Identity = 33/129 (25.58%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   VRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRIS 62
           V +P+ L+P H+ ++++ + NP  A+ LF+ A  R+P Y H+  VY  ++  L  +  ++
Sbjct: 2   VVFPKSLSPKHVLKLLKSEKNPRAAFALFDSA-TRHPGYAHSAVVYHHILRRLSETRMVN 61

Query: 63  EMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGG-FNCTDRTQTFNTL 122
            +  +++ ++   C+C + +    IKTY  + + ++ + +FK +   F C    +++NTL
Sbjct: 62  HVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTL 121

Query: 123 LEILLNESQ 131
           L   +   Q
Sbjct: 122 LNAFVEAKQ 129

[Close]

BLAST of Carg04985 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08
Identity = 28/121 (23.14%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 18  IRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQ 77
           +++  +P  A  LF++   +   ++H+ P Y+++I  L  S     + +++  ++  + +
Sbjct: 56  LKEIEDPEEALSLFHQ--YQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR 115

Query: 78  CKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAACQL 137
           C++S+F   I+ Y   G +++ I +F  +  F+C    Q+ NTL+ +L++  +L+ A   
Sbjct: 116 CRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSF 174

Query: 138 F 139
           F
Sbjct: 176 F 174

[Close]

BLAST of Carg04985 vs. TAIR10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-07
Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 10  TPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVID 69
           T   L   +R Q +   A +LFN A  + PN+     +Y  ++  LG SG   +M+++++
Sbjct: 49  TDVKLLDSLRSQPDDSAALRLFNLAS-KKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 108

Query: 70  QMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFK-SLGGFNCTDRTQTFNTLLEILLNE 129
            MK   C+   S F   I++YA   L +E +S+    +  F     T  +N +L +L++ 
Sbjct: 109 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDG 168

Query: 130 SQL 132
           + L
Sbjct: 169 NSL 170

[Close]

BLAST of Carg04985 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-07
Identity = 23/91 (25.27%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 41  YQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGI 100
           ++H    +  MI  L   G++  ++ ++ QMK+    C + +F   I  Y   GL E  +
Sbjct: 72  FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 131

Query: 101 SLFKSLGGFNCTDRTQTFNTLLEILLNESQL 132
            +F  +  F C    + +N +L+ LL E+++
Sbjct: 132 EMFYRIKEFGCDPSVKIYNHVLDTLLGENRI 162

[Close]

BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-55
Identity = 121/317 (38.17%), Postives = 169/317 (53.31%), Query Frame = 0


Query: 3   VRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRIS 62
           VRWPR+LTP+ LSQI++KQ NP TA +LF EAK R+P+Y HNG VYA MI+ILG S R+ 
Sbjct: 4   VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVL 63

Query: 63  EMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLL 122
           EM+ VI++MK DSC+CKDS+F+  I+T++  G LE+ ISLFKSL  FNC + + +F+TLL
Sbjct: 64  EMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLL 123

Query: 123 EILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQSC 182
           + ++ ES+L+AAC +F++  +                                  +YQ C
Sbjct: 124 QEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGC 183

Query: 183 YPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGEIE 242
           YP+R SY                      X                              
Sbjct: 184 YPDRDSYRILMKGFCLEGKLEEATHLLYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 243

Query: 243 QAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCA 302
                 GKIL+KGLKAPKR ++ I+  +   S   +  +K L+ E LI+G IP  DSY A
Sbjct: 244 XXXXXXGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIPCLDSYSA 303

Query: 303 MAIDLYNENETDQGDKV 320
           MA DL+ E +  +G++V
Sbjct: 304 MATDLFEEGKLVEGEEV 320

[Close]

BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-12
Identity = 33/129 (25.58%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   VRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRIS 62
           V +P+ L+P H+ ++++ + NP  A+ LF+ A  R+P Y H+  VY  ++  L  +  ++
Sbjct: 2   VVFPKSLSPKHVLKLLKSEKNPRAAFALFDSA-TRHPGYAHSAVVYHHILRRLSETRMVN 61

Query: 63  EMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGG-FNCTDRTQTFNTL 122
            +  +++ ++   C+C + +    IKTY  + + ++ + +FK +   F C    +++NTL
Sbjct: 62  HVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTL 121

Query: 123 LEILLNESQ 131
           L   +   Q
Sbjct: 122 LNAFVEAKQ 129

[Close]

BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-07
Identity = 28/121 (23.14%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 18  IRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQ 77
           +++  +P  A  LF++   +   ++H+ P Y+++I  L  S     + +++  ++  + +
Sbjct: 56  LKEIEDPEEALSLFHQ--YQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR 115

Query: 78  CKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAACQL 137
           C++S+F   I+ Y   G +++ I +F  +  F+C    Q+ NTL+ +L++  +L+ A   
Sbjct: 116 CRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSF 174

Query: 138 F 139
           F
Sbjct: 176 F 174

[Close]

BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9LFF1|PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-06
Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 10  TPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVID 69
           T   L   +R Q +   A +LFN A  + PN+     +Y  ++  LG SG   +M+++++
Sbjct: 49  TDVKLLDSLRSQPDDSAALRLFNLAS-KKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 108

Query: 70  QMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFK-SLGGFNCTDRTQTFNTLLEILLNE 129
            MK   C+   S F   I++YA   L +E +S+    +  F     T  +N +L +L++ 
Sbjct: 109 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDG 168

Query: 130 SQL 132
           + L
Sbjct: 169 NSL 170

[Close]

BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-06
Identity = 23/91 (25.27%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 41  YQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGI 100
           ++H    +  MI  L   G++  ++ ++ QMK+    C + +F   I  Y   GL E  +
Sbjct: 72  FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 131

Query: 101 SLFKSLGGFNCTDRTQTFNTLLEILLNESQL 132
            +F  +  F C    + +N +L+ LL E+++
Sbjct: 132 EMFYRIKEFGCDPSVKIYNHVLDTLLGENRI 162

[Close]

BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A1S4E2N8|A0A1S4E2N8_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.3e-123
Identity = 279/317 (88.01%), Postives = 299/317 (94.32%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPR+LTPT+LSQIIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYAAMINILGNSGR
Sbjct: 1   MTVRWPRILTPTYLSQIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           +SEMREV+DQM+ DSC+CKDS+FSFAIKTYASHGLLE+GISLFKSLG FNCT+RTQTFNT
Sbjct: 61  VSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFNCTNRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILLNESQL AACQLFQ+ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q
Sbjct: 121 LLEILLNESQLHAACQLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSY XXXXXXXXXXXXXXXXXXXXXXFWRISR+GSGGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYLXXXXXXXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKIL+KGLKAPKRAHY IDL+ CR +KLT+ EIK LINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGD 318
           CAMA+DLYNEN+TDQGD
Sbjct: 301 CAMAVDLYNENKTDQGD 317

[Close]

BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A0A0K9Q4|A0A0A0K9Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095860 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.1e-119
Identity = 271/318 (85.22%), Postives = 291/318 (91.51%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           M++RWPR+LTPT LSQIIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYA MINILGNSGR
Sbjct: 1   MSIRWPRILTPTCLSQIIRKQNNPQTAYQLFKEAKCRYPDYRHNGPVYATMINILGNSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           +SEMREV+DQM+ DSC+CKDS+FSFAIKTYASHGLLE+GISLFKS G FNCT+RTQTFNT
Sbjct: 61  VSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEILL ESQL AACQLFQ+ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 121 LLEILLKESQLHAACQLFQECSYGWGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
           SCYPNRLSY XXXXXXXXXXXXXXXXXXXX  FWRISR+G GGDIVIYRTLLFALCDNGE
Sbjct: 181 SCYPNRLSYLXXXXXXXXXXXXXXXXXXXXSMFWRISRKGGGGDIVIYRTLLFALCDNGE 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           IEQAVEILGKIL+KGLKAPKRAHY IDL+ CR S LT+ EIK LINEALIKGGIPSSDSY
Sbjct: 241 IEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNSNLTIEEIKSLINEALIKGGIPSSDSY 300

Query: 301 CAMAIDLYNENETDQGDK 319
           CAMA+DLYNEN+TDQGDK
Sbjct: 301 CAMAVDLYNENKTDQGDK 318

[Close]

BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A1S3CB38|A0A1S3CB38_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.2e-94
Identity = 235/267 (88.01%), Postives = 251/267 (94.01%), Query Frame = 0


Query: 51  MINILGNSGRISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFN 110
           MINILGNSGR+SEMREV+DQM+ DSC+CKDS+FSFAIKTYASHGLLE+GISLFKSLG FN
Sbjct: 1   MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFN 60

Query: 111 CTDRTQTFNTLLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXX 170
           CT+RTQTFNTLLEILLNESQL AACQLFQ+ S+    XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  CTNRTQTFNTLLEILLNESQLHAACQLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 171 XXXXXXXDYQSCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRT 230
           XXXXXXX  QSCYPNRLSY XXXXXXXXXXXXXXXXXXXXXXFWRISR+GSGGDIVIYRT
Sbjct: 121 XXXXXXXXXQSCYPNRLSYLXXXXXXXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRT 180

Query: 231 LLFALCDNGEIEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALI 290
           LLFALCDNGEIEQAVEILGKIL+KGLKAPKRAHY IDL+ CR +KLT+ EIK LINEALI
Sbjct: 181 LLFALCDNGEIEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALI 240

Query: 291 KGGIPSSDSYCAMAIDLYNENETDQGD 318
           KGGIPSSDSYCAMA+DLYNEN+TDQGD
Sbjct: 241 KGGIPSSDSYCAMAVDLYNENKTDQGD 267

[Close]

BLAST of Carg04985 vs. TrEMBL
Match: tr|B9RNK1|B9RNK1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1339630 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 6.3e-83
Identity = 166/308 (53.90%), Postives = 203/308 (65.91%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           MTVRWPRLLTPTHLSQIIR Q NP  A ++F EAK +YPNY+HNGPVYA MI ILG+SGR
Sbjct: 1   MTVRWPRLLTPTHLSQIIRNQKNPLIALRIFKEAKDKYPNYRHNGPVYATMIGILGSSGR 60

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           I+EM+EV+DQM+ DSC+CKDSIF+ AIKTYA  GLL E ISLFK++  FNC + T++FNT
Sbjct: 61  ITEMKEVLDQMREDSCECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFNT 120

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LL+I++ ES+L+AA +LF +SS+                                  +YQ
Sbjct: 121 LLQIMVKESKLEAAHRLFLESSYGWEVKSRVRSLNLLMDVLCQHNRSDVALQVFQEMNYQ 180

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
            CYP+R SY                       FWRIS++GSG DIVIYR  L ALCD G 
Sbjct: 181 GCYPDRDSYRIVMMGLCKDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDIGM 240

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
           +EQA+E+LGKIL+KGLKAPKR H  +DL+ C  S   +   K LINEALI+G IPS  SY
Sbjct: 241 VEQALEVLGKILRKGLKAPKRCHPRLDLSNCN-SDGNIETTKHLINEALIRGAIPSLSSY 300

Query: 301 CAMAIDLY 309
            AMA+D Y
Sbjct: 301 TAMAVDFY 307

[Close]

BLAST of Carg04985 vs. TrEMBL
Match: tr|G7JZ89|G7JZ89_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11432583 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.8e-82
Identity = 160/319 (50.16%), Postives = 206/319 (64.58%), Query Frame = 0


Query: 1   MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGR 60
           M++RWPR+L PT+L+QIIR Q NP  A ++FNEAK +YP Y HNGPVYA MINILG SGR
Sbjct: 3   MSIRWPRVLNPTYLTQIIRTQKNPLKALEIFNEAKLKYPKYSHNGPVYATMINILGTSGR 62

Query: 61  ISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNT 120
           + EM ++I+QMK DSC+CKDS+F  AIKTYA  GL++E ISL+K++  FNC + TQ+FNT
Sbjct: 63  LKEMSDLIEQMKEDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNT 122

Query: 121 LLEILLNESQLDAACQLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQ 180
           LLEI++NE++L+ A  LF +SS                                   DYQ
Sbjct: 123 LLEIMVNENKLEDAHSLFVESSCGWEVKSRVQALNLLMYALCRKSRSDLALQIFQEMDYQ 182

Query: 181 SCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGE 240
            CYPNR SY                       FWRIS +G+G DIVIYRTLL ALCDNG+
Sbjct: 183 GCYPNRESYLIVMKGLCQDKRLHEATHLLYSMFWRISLKGNGEDIVIYRTLLDALCDNGK 242

Query: 241 IEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSY 300
            ++AVEILGKIL+KGLKAPKR +  +D++ C   K      K  I+EAL++G +PS+ SY
Sbjct: 243 FDEAVEILGKILRKGLKAPKRCYNRLDISQCGDGK-DAEVTKRWIHEALVRGSVPSTASY 302

Query: 301 CAMAIDLYNENETDQGDKV 320
            +MA+DLY E + D+ DKV
Sbjct: 303 TSMAVDLYEEGKIDEADKV 320

The following BLAST results are available for this feature:

BLAST of Carg04985 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959953.1	2.4e-142	100.00	pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_0...	[more]
XP_023514107.1	5.3e-142	99.69	pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucurbita pepo...	[more]
XP_023004266.1	1.2e-141	99.37	pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023...	[more]
XP_016902498.1	1.9e-123	88.01	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cuc...	[more]
XP_004140638.1	1.7e-119	85.22	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cuc...	[more]

BLAST of Carg04985 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05600.1	1.1e-56	38.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09060.1	2.0e-13	25.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G07740.1	1.1e-08	23.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53700.1	2.1e-07	27.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G48810.1	2.7e-07	25.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg04985 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYK1\|PPR11_ARATH	2.0e-55	38.17	Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SS81\|PP221_ARATH	3.5e-12	25.58	Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LQQ1\|PPR20_ARATH	2.0e-07	23.14	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop...	[more]
sp\|Q9LFF1\|PP281_ARATH	3.8e-06	27.64	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
sp\|Q9M302\|PP270_ARATH	4.9e-06	25.27	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg04985 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2N8\|A0A1S4E2N8_CUCME	1.3e-123	88.01	pentatricopeptide repeat-containing protein At1g05600 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A0A0K9Q4\|A0A0A0K9Q4_CUCSA	1.1e-119	85.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095860 PE=4 SV=1	[more]
tr\|A0A1S3CB38\|A0A1S3CB38_CUCME	1.2e-94	88.01	pentatricopeptide repeat-containing protein At1g05600 isoform X2 OS=Cucumis melo...	[more]
tr\|B9RNK1\|B9RNK1_RICCO	6.3e-83	53.90	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]
tr\|G7JZ89\|G7JZ89_MEDTR	1.8e-82	50.16	PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11432583 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04985-RA	Carg04985-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 86..107 e-value: 0.72 score: 10.1 coord: 441..469 e-value: 3.0E-6 score: 27.0 coord: 226..256 e-value: 0.0037 score: 17.3 coord: 48..76 e-value: 0.015 score: 15.4 coord: 341..357 e-value: 0.87 score: 9.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 366..416 e-value: 4.7E-11 score: 42.6 coord: 154..198 e-value: 1.4E-10 score: 41.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 47..77 e-value: 7.2E-5 score: 20.7 coord: 154..185 e-value: 5.3E-5 score: 21.1 coord: 441..470 e-value: 8.9E-7 score: 26.7 coord: 188..212 e-value: 0.0026 score: 15.8 coord: 406..431 e-value: 5.7E-7 score: 27.3 coord: 226..257 e-value: 0.0026 score: 15.8 coord: 370..403 e-value: 1.4E-5 score: 22.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 224..258 score: 10.424
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 438..472 score: 10.446
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 296..330 score: 6.818
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 114..149 score: 5.788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 79..113 score: 6.193
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 367..397 score: 9.076
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 44..78 score: 8.572
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 150..184 score: 9.58
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 403..437 score: 11.455
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..215 score: 7.991
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 331..366 score: 8.035
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 9..141 e-value: 5.9E-17 score: 63.6 coord: 382..493 e-value: 4.3E-25 score: 90.1 coord: 286..381 e-value: 7.2E-11 score: 43.7 coord: 146..285 e-value: 5.2E-19 score: 70.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 519..546
None	No IPR available	PANTHER	PTHR24015:SF542	SUBFAMILY NOT NAMED	coord: 9..482
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 9..482

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04985	CmoCh08G001590	Cucurbita moschata (Rifu)	carcmoB0119
Carg04985	Bhi12G002053	Wax gourd	carwgoB0093

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04985	Cucurbita maxima (Rimu)	carcmaB0105
Carg04985	Cucurbita maxima (Rimu)	carcmaB0112
Carg04985	Cucurbita moschata (Rifu)	carcmoB0113
Carg04985	Cucurbita pepo (Zucchini)	carcpeB0117
Carg04985	Cucurbita pepo (Zucchini)	carcpeB0125
Carg04985	Wild cucumber (PI 183967)	carcpiB0097
Carg04985	Cucumber (Chinese Long) v2	carcuB0093
Carg04985	Cucumber (Chinese Long) v3	carcucB0100
Carg04985	Bottle gourd (USVL1VR-Ls)	carlsiB070
Carg04985	Melon (DHL92) v3.5.1	carmeB0080
Carg04985	Melon (DHL92) v3.6.1	carmedB0081
Carg04985	Watermelon (Charleston Gray)	carwcgB0083
Carg04985	Watermelon (97103) v1	carwmB0082
Carg04985	Watermelon (97103) v2	carwmbB0078