Carg04947 (gene) Silver-seed gourd

NameCarg04947
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_060 : 398942 .. 401996 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTGAGTTCTTTTATTCAGGCTTTTTAATCAAGAACAATTTGATTTTGATGATAGCGATGTTCTTGCATATGCTTCTTCAGCTGGCTTATTCCTTTAATATAGGTCCACTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGGGTTCTTTTTTTCCTCCTCTTGTTTATTTGAATGCAAGGACACCCTTGAATTAAAGTTTTCACTAATTGATTAAGGAGCCAGAAGTTTTCCTCTTGTTTATATTGAGATGTCTTCTTCTTTGCCATAACCGTAGCATATATTCTTTTTATAAGAGTTTACTTTATGCATATCTATGACTGTTTCTTTTGGATGGAAATATAACTTCAATCAAGAAGAGGGAACTACAAAATTACATGAATTGTTGGAAGAGGAGTCCCTAATCGGCTAATTAAAGAGTTGATCATGGGTTTATCAGTAAGGAATATATCTCCATTGGTATGAGGCTTGTTGGGGAAGCCAAAAGCAAAGCCACGAGAGCTTGTGCTCAAAGTGGGTAATATCATACGATTGTGGAGGGTCGTGATTCCTAACATTATTGGAGCCACCTATCTAGGATAATAGACGTTACCAACCTATGAGAAAATGCTATGACTTTCTTGATATGAAAATATCGGAGTGTCACATGGTTGCCTCATGAAACGAATCAAGATGTGAAAAATATGAAGAAAAACATAGAATTTGATCTGCTTAACCCCTGCCAACGTGCCGTTTACAAAATTCTTCTCTCTAGCCAAATGTTCTACACTATCGCCCGACAACCCGCTTGCAACAAAATTCCCTTTGTCCTCAAATGGAGCTCTGTTAGTTTTGAGTTTTTAAGGAGAAAGAACATATTACTTGTTTTCTAATTACTTAACATGTATTGCTGTTGAAATTTGATCACTTGATGGCGATATGTAAAACCTTTGTAGGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGTAATTGCTTATTTTCTATTGTTTGCTTGATTGAGCCATATTTTCTATGACTTTCTTGATTGAGCCACACTATTTATGGCAATAGCTTTGGGAATTTTAAGCTCATTTTTTAAAAAACTTGTTGCAACTTGCAAATTTATCATGTCTAGCAGTTTGTTGACAGTACCTTTTACTATCTGTTAAGTATGTTCTAAAATTTACAAGAATTGTTGCTGAAATTTACTAAGATTTCTGAACATGAGCTTCCTTTATGAGAATGTTCTTTGTTAGTTTGTTGTATGAATGTGTGTGTTTTCTCTCTAGCTCTTGTTTAATTCTGAAATTTACTAAGATTTTTTACCTGATTCAGGTTTTGCTGCAGGCTGATTGTATTTTTGCTTTTGGTTAATATTTTCTTAAGATCAAGTAAATTTGTACCATTAAACTTCTTGCATTTTTCTCATTTGTAGGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCAGTAAGTCGATCATTAACATAGTGTCCTACGCACTGCACCAGCTTTCACCTTACTCGTTTTCGATGATGTTACCGTTATGCTACAAGTAGATTCTTCTTAGGAAAAGCAATACTATCGAAACATATAGCGTGGTTGAGGCCAGACTGCATGAGTCACCATAATATAGTAAAAATATACTTTTGTTTGCTCGACGTCGTATGCTTCTTCGAATTGGTTCCTATGTTAAGAAATGATTGTGGATTGTTAGCCTGGTTAGTATGGAATAAATTTCTTTTCAATTCGTTTTGAACTTGTCATGCTCAACAATGATCAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCACTTTTCGTTGCTCGACGTTGTATGCTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTGTGGATTGTTAGCCTGGTTAGTATGGTATAAATCTCTTTTCAACTCGTTTTGAACTCATCATGCTCAACAAAGAACAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCACTTTTTGTTGCACGACGTCGAATGCTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTATGGATTGTTAGCCTGGTTAGTATGGAATAAATTTCTTTTTAACTCGTTTTGAACTTGTCATGCTTCTTGCTTTTCGTTCGTTGTTTCGTATTTGTACATTAGAACTTTATCTTCCAGGGCTTCATAATCAGTAACTTTCGACTTGTAAATAGTTTAACATGATTATGAACTCTGTTAGGTTCCCAGTGGCTGCCTCATTAGATATCATCTTCTGTCATCGTCCAAATTGTACGTATTGATCCTCTAAATGTTATCCATTTCCTTTGTTCTTTCCATTCAGTGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACGAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAGTCACTGTGCATCCATATGTTGAAATTAGGCAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATATTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTGACTGCATTTTCAAGATGACGAACGGGCGAACTTCTGTAGTTAATTTGTGACTTTGAGTTCAACGATCGCAAAGTGAATGACTGAACCATCAATCTTTGATATGGTAATTCGTATTTTATTCTATTGAGCTATGCTCGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTCATTGAATACCATTATTTTGTTGAGCTCAAATTCGGAAGCGGTCAGGCAAAACTATCTTTGTGTGTTTTAT

mRNA sequence

GCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTCCACTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCATGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACGAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAGTCACTGTGCATCCATATGTTGAAATTAGGCAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATATTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTGACTGCATTTTCAAGATGACGAACGGGCGAACTTCTGTAGTTAATTTGTGACTTTGAGTTCAACGATCGCAAAGTGAATGACTGAACCATCAATCTTTGATATGGTAATTCGTATTTTATTCTATTGAGCTATGCTCGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTCATTGAATACCATTATTTTGTTGAGCTCAAATTCGGAAGCGGTCAGGCAAAACTATCTTTGTGTGTTTTAT

Coding sequence (CDS)

ATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGA

Protein sequence

MESANSSQQFHPRSERSKLPVGSAGYTLAS
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04947-RACarg04947-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg04947Silver-seed gourdcarcarB093
Carg04947Cucumber (Gy14) v2carcgybB0097
Carg04947Cucumber (Gy14) v1carcgyB0092
Carg04947Cucurbita maxima (Rimu)carcmaB0108
Carg04947Cucurbita maxima (Rimu)carcmaB0109
Carg04947Cucurbita maxima (Rimu)carcmaB0112
Carg04947Cucurbita moschata (Rifu)carcmoB0116
Carg04947Cucurbita moschata (Rifu)carcmoB0117
Carg04947Cucurbita moschata (Rifu)carcmoB0119
Carg04947Cucurbita pepo (Zucchini)carcpeB0119
Carg04947Cucurbita pepo (Zucchini)carcpeB0120
Carg04947Cucurbita pepo (Zucchini)carcpeB0125
Carg04947Wild cucumber (PI 183967)carcpiB0097
Carg04947Wild cucumber (PI 183967)carcpiB0101
Carg04947Cucumber (Chinese Long) v2carcuB0093
Carg04947Cucumber (Chinese Long) v2carcuB0097
Carg04947Cucumber (Chinese Long) v3carcucB0100
Carg04947Cucumber (Chinese Long) v3carcucB0104
Carg04947Bottle gourd (USVL1VR-Ls)carlsiB070
Carg04947Bottle gourd (USVL1VR-Ls)carlsiB076
Carg04947Melon (DHL92) v3.5.1carmeB0080
Carg04947Melon (DHL92) v3.5.1carmeB0086
Carg04947Melon (DHL92) v3.6.1carmedB0081
Carg04947Melon (DHL92) v3.6.1carmedB0087
Carg04947Watermelon (Charleston Gray)carwcgB0079
Carg04947Watermelon (Charleston Gray)carwcgB0083
Carg04947Watermelon (97103) v1carwmB0078
Carg04947Watermelon (97103) v1carwmB0082
Carg04947Watermelon (97103) v2carwmbB0078
Carg04947Watermelon (97103) v2carwmbB0084
Carg04947Wax gourdcarwgoB0092
Carg04947Wax gourdcarwgoB0093
Carg04947Wax gourdcarwgoB0094
Carg04947Wax gourdcarwgoB0096