Carg04928 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04928
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein TIC 22-like, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_060 : 312455 .. 315825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTCTCTCCCTTGCGAAGAATACGCACCTTGGCATTGAGTCTACTATCTTCTGCAACTGCAAAACCACACTCTCCCTTCTTCCTCCCGACGAAATGAGTTCCCAAGGAAATGACCCAAATTCTTCTTTGCCTAAACCCAGCCAACTCGAATGCAACCTGCGTCAAGCTCTCGCCGGCTTCCAAAACCAGTGCTCTGGGGTACTCCACAACCTTTCCAACCTTCCGCCCTTCAATCCCCCTCTTTCCCTCAAATCCCAACTTCAATCTACCTTCTCGAGCCTCCAAAACCAAGCGAAACGTGCACTTGACTCCAGAATTTCAGCCTTTGATCCCGTTGCTAAAAACCCGGTTTGGGCTCGGATTGCTGAAACTGCGAAGACCCCTCGCCCATATGCCCGTCCTACTGTCGCCTTGTCGACGGAAGCCATCGAAGAGCGGCTGGCTGGTATTCCTGTTTATGCCCTCAGCAATGCGTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCGACTGCAAAATCTCTGGGATTTTTTTGCTTTAATAAGGAGGATGCAGAAACGCTGCTTGGGCATATTGGAACAGTAGATCCTTCAGCGCAGAACGGGTCCAAAGTGGTGACCGTTGCCTTGAATAAAGTGGGTATTACTAATTTCCGCTCTGTTATGTGTGGATAAGAACTTCTCGCGTTTCCAACCCAATTTTGTTGGTTGTTTTTGCAGGTTTTTCAGCTTCATGTTAATGGGGTGGCCTTCAGATTGATTCCTGAGTGCTCTCAGGTGAAAAACGCTCTGAGTGTAAGTTCTCTCTCGCTCTCTCTATCTCTCCCTACGGTGTAAATTGGAGGGCGGGAATGGTTTTTGAATTTAGTTTCTCTTATTTTCTTTTTTCTTTTAAATGTCAAATTACAATTTCTAATTGCTTGTTTCCCTTCAGTACAGAAAGTCCTTTGCTGTTTCCCTTTATATACTTGTGGCTGAGGCCAATAATTCTATCTATACGCTTGTAATCGTCTTTGTTTATTATGTTCTTGTTTGTACATTAACAATATTATTTTGCCTGCGTAGGAAAGAGAAAAGGCTGGCATTTCTGATAATGGATTTCCTGGGGTCCCTGTTTTCCAGGTTAATATCTAACATCTCTAACTCGAAATTGGTATCTGTAATTCATTTGTTGTTCACTATGCAGTTCACGTTCAATGGTAGAGAAAGCAGTACTGGTTGGACACTGCTAACCTTTTATGTGGGTTGCAGGGCCTTATTAATATCAAGTGTTTTTGAAAATTATGTTCTCTTTGTATGGGTTTTCACTTTTCAAGAAGTATTTTTGAAATCTTCCTTTCTTAATAAGTGCTTTTGACGTCTCAGTCAATTTTCAAAAATAAGAAATAGAAATTTGAAAACTAGGATATGATTTCAAAACAGTTTTAGAAGTAAATTAGAAGAAAATGTTAGAAACTAAGCATAACTCTCAAAAACTTAAAACTAAGAATAAAAATGTCTTCAAACGGTCCCATATCAAGCCAAAACTTCTGTTTTTCATTAGTGCTGCAATCTATTAATTATGTTGTTGAAATTAACAGTCATGGTAATGATTTTATGCTTTTCTGAGTATGAGATTACTTATTGCCTTGTTGAAATCTGTATGATTATATTTTAACATTTAATTAATGCCTTAAGTTTTAATTCTTAACATTTTCTTTCCCATTGATTGAACGCTGAAATTGAGTTGAAAGATGGTAAATTAACTTTTTAGAGCAATTAACTCGTATGCCCATTTATACCAATCCTTTTTCATTTGTTTTTTTTTTTAAAAAAGATTATAATTGTTTATGATGTAGAACTGTATGACTTTGAGAATTTAGTTGTAATTGAATCCATTTTTGTGCTGTTTTAATTGAAGGCTCTGAGAACTGTATGACTGACTCTGTGGCTGTTTCACTATGCCTCTTGGTGGCTTCTTGCCTTGAGGCATTCGTGAGACATGTTGCCTCATTTTGTGCTTTCAAAATGCAATTTGTAGGTTAATGCATTCAAAATAGGCAGCCAAATCACATGGAGTTTGAACTCTTCTGAGCTGCCTATTTGGGGAATCAAATATACCTTCAAATTTTTAGATTACAAAATTTCGAAATTAATGGACTTAAATGTTATTCCCGATTTCAAACTTAAAGAACGCTTAGCTATATGAAGTTTTTTTTCTTCCCAGTCATTGTTATGTTGTATGCATGGGTTTGTTTTTGTTTTGATCTGGTTAATATTACCTTGTTTGAGGATTTCTAAACATTTGGGACTGATATAATCAAGTTTATCCACTTCGCATAGTCGAAGAGCTTGATACTGAGGAGCCAAAACAAGAGTTACCGTCCTGCCTTTTTCAGAAAGGTCAGTTAAGAAGAGTAGTTTTCTTGACCAGGGAGTACCATTTTTACATGGATTCACTGTTATCTCATTCTTGGATTTTTTTAGGAGGATTTGGAGAATTCTCTAAAAAGAGCATCTCAGGACCAAAATCAAATGAATCCTGCCCTCCGACCTGGGGATGTACAGGTATAGCTCTGTGTGCTTCTTGGTACTGAAGCATGTTCTGTAGATGGGAACTTTAACATTTTTTTTCTCAATCTTGTAGGTTGCTGCTTTTGAAGACATTATAAAAGGAATGAAGGTGAGAAGCCCAACTCTTTTTTAGTTTCTAGATACTCTCTTATCAAATAAAGTTTCATGGAACACTCTCTCTATCTTCTAAGAAACTACTCTATTCCACTGTCTTTAAATGTTTGTCAAGAGACAAATAATTGTATACATTTGTTTCATTGACAGGATAATTCTATTTCAACATGGGATGATGTAGTCTTCATTCCTCCCGGATTTGATGTTTCAACTGACCCCAAAAAACAGCATTAGGCATCCGCATAGGAACTGAGGTAGTTGCTGCCAAATTTGTCTCATCATACAAAAACCTTATATGGATACAGCAGGGTACTTAGTTGAGGTAATATCTTGATGCTTCTGTAATTTCTTTTAACCTCTTTAGTTTGTTTGTTCTTGTTCATTTTGGCAACTATTTTATTAAAACTTTTTTGTTTCTTGATTTTAAGAATATATACGAATTTTGGCAACATGTTTTAGACTGTCTTTCTTTAAAATTGTGCAAACAAGAAACAAAAGCATTATCGAACTAGCCTTTTAAGCTGCCAGCTCTTGCCACCTTAAAACATCCCTTGGTTGCTCTTGCTACCTTAAAATATCCCGTGGTTGTTGGACTCGGCAATGATTTGGGTACTGTTTCTTAGGTTCAAATGATTGGAAGGGAGGGGATCTTTTGTTACATTTGTGTTAAGAGAAGGAATCCCACCAAACTCCACGCCTGGTTT

mRNA sequence

ATTCTTCTCTCCCTTGCGAAGAATACGCACCTTGGCATTGAGTCTACTATCTTCTGCAACTGCAAAACCACACTCTCCCTTCTTCCTCCCGACGAAATGAGTTCCCAAGGAAATGACCCAAATTCTTCTTTGCCTAAACCCAGCCAACTCGAATGCAACCTGCGTCAAGCTCTCGCCGGCTTCCAAAACCAGTGCTCTGGGGTACTCCACAACCTTTCCAACCTTCCGCCCTTCAATCCCCCTCTTTCCCTCAAATCCCAACTTCAATCTACCTTCTCGAGCCTCCAAAACCAAGCGAAACGTGCACTTGACTCCAGAATTTCAGCCTTTGATCCCGTTGCTAAAAACCCGGTTTGGGCTCGGATTGCTGAAACTGCGAAGACCCCTCGCCCATATGCCCGTCCTACTGTCGCCTTGTCGACGGAAGCCATCGAAGAGCGGCTGGCTGGTATTCCTGTTTATGCCCTCAGCAATGCGTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCGACTGCAAAATCTCTGGGATTTTTTTGCTTTAATAAGGAGGATGCAGAAACGCTGCTTGGGCATATTGGAACAGTAGATCCTTCAGCGCAGAACGGGTCCAAAGTGGTGACCGTTGCCTTGAATAAAGTTTTTCAGCTTCATGTTAATGGGGTGGCCTTCAGATTGATTCCTGAGTGCTCTCAGGTGAAAAACGCTCTGAGTGAAAGAGAAAAGGCTGGCATTTCTGATAATGGATTTCCTGGGGTCCCTGTTTTCCAGTCGAAGAGCTTGATACTGAGGAGCCAAAACAAGAGTTACCGTCCTGCCTTTTTCAGAAAGGAGGATTTGGAGAATTCTCTAAAAAGAGCATCTCAGGACCAAAATCAAATGAATCCTGCCCTCCGACCTGGGGATGTACAGGTTGCTGCTTTTGAAGACATTATAAAAGGAATGAAGGATAATTCTATTTCAACATGGGATGATGTAGTCTTCATTCCTCCCGGATTTGATGTTTCAACTGACCCCAAAAAACAGCATTAGGCATCCGCATAGGAACTGAGGTAGTTGCTGCCAAATTTGTCTCATCATACAAAAACCTTATATGGATACAGCAGGGTACTTAGTTGAGGTAATATCTTGATGCTTCTGTAATTTCTTTTAACCTCTTTAGTTTGTTTGTTCTTGTTCATTTTGGCAACTATTTTATTAAAACTTTTTTGTTTCTTGATTTTAAGAATATATACGAATTTTGGCAACATGTTTTAGACTGTCTTTCTTTAAAATTGTGCAAACAAGAAACAAAAGCATTATCGAACTAGCCTTTTAAGCTGCCAGCTCTTGCCACCTTAAAACATCCCTTGGTTGCTCTTGCTACCTTAAAATATCCCGTGGTTGTTGGACTCGGCAATGATTTGGGTACTGTTTCTTAGGTTCAAATGATTGGAAGGGAGGGGATCTTTTGTTACATTTGTGTTAAGAGAAGGAATCCCACCAAACTCCACGCCTGGTTT

Coding sequence (CDS)

ATGAGTTCCCAAGGAAATGACCCAAATTCTTCTTTGCCTAAACCCAGCCAACTCGAATGCAACCTGCGTCAAGCTCTCGCCGGCTTCCAAAACCAGTGCTCTGGGGTACTCCACAACCTTTCCAACCTTCCGCCCTTCAATCCCCCTCTTTCCCTCAAATCCCAACTTCAATCTACCTTCTCGAGCCTCCAAAACCAAGCGAAACGTGCACTTGACTCCAGAATTTCAGCCTTTGATCCCGTTGCTAAAAACCCGGTTTGGGCTCGGATTGCTGAAACTGCGAAGACCCCTCGCCCATATGCCCGTCCTACTGTCGCCTTGTCGACGGAAGCCATCGAAGAGCGGCTGGCTGGTATTCCTGTTTATGCCCTCAGCAATGCGTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCGACTGCAAAATCTCTGGGATTTTTTTGCTTTAATAAGGAGGATGCAGAAACGCTGCTTGGGCATATTGGAACAGTAGATCCTTCAGCGCAGAACGGGTCCAAAGTGGTGACCGTTGCCTTGAATAAAGTTTTTCAGCTTCATGTTAATGGGGTGGCCTTCAGATTGATTCCTGAGTGCTCTCAGGTGAAAAACGCTCTGAGTGAAAGAGAAAAGGCTGGCATTTCTGATAATGGATTTCCTGGGGTCCCTGTTTTCCAGTCGAAGAGCTTGATACTGAGGAGCCAAAACAAGAGTTACCGTCCTGCCTTTTTCAGAAAGGAGGATTTGGAGAATTCTCTAAAAAGAGCATCTCAGGACCAAAATCAAATGAATCCTGCCCTCCGACCTGGGGATGTACAGGTTGCTGCTTTTGAAGACATTATAAAAGGAATGAAGGATAATTCTATTTCAACATGGGATGATGTAGTCTTCATTCCTCCCGGATTTGATGTTTCAACTGACCCCAAAAAACAGCATTAG

Protein sequence

MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTFSSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGFDVSTDPKKQH

Homology

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BLAST of Carg04928 vs. NCBI nr
Match: XP_023005035.1 (protein TIC 22-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 610.1 bits (1572), Expect = 4.0e-171
Identity = 309/310 (99.68%), Postives = 310/310 (100.00%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF
Sbjct: 49  MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 108

Query: 61  SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 120
           SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP
Sbjct: 109 SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 168

Query: 121 VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 180
           VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK
Sbjct: 169 VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 228

Query: 181 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA 240
           VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRS+NKSYRPA
Sbjct: 229 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSKNKSYRPA 288

Query: 241 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 300
           FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF
Sbjct: 289 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 348

Query: 301 DVSTDPKKQH 311
           DVSTDPKKQH
Sbjct: 349 DVSTDPKKQH 358

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BLAST of Carg04928 vs. NCBI nr
Match: XP_022959990.1 (protein TIC 22-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 609.4 bits (1570), Expect = 6.9e-171
Identity = 309/310 (99.68%), Postives = 309/310 (99.68%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF
Sbjct: 48  MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 107

Query: 61  SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 120
           SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP
Sbjct: 108 SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 167

Query: 121 VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 180
           VYALSNASEEFVLVSGASTAKSLG FCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK
Sbjct: 168 VYALSNASEEFVLVSGASTAKSLGLFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 227

Query: 181 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA 240
           VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA
Sbjct: 228 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA 287

Query: 241 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 300
           FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF
Sbjct: 288 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 347

Query: 301 DVSTDPKKQH 311
           DVSTDPKKQH
Sbjct: 348 DVSTDPKKQH 357

[Close]

BLAST of Carg04928 vs. NCBI nr
Match: XP_023514114.1 (protein TIC 22-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 607.4 bits (1565), Expect = 2.6e-170
Identity = 308/310 (99.35%), Postives = 308/310 (99.35%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MSSQGNDPNSSLPKPSQLECNLRQALAG QN CSGVLHNLSNLPPFNPPLSLKSQLQSTF
Sbjct: 93  MSSQGNDPNSSLPKPSQLECNLRQALAGIQNHCSGVLHNLSNLPPFNPPLSLKSQLQSTF 152

Query: 61  SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 120
           SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP
Sbjct: 153 SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIP 212

Query: 121 VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 180
           VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK
Sbjct: 213 VYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNK 272

Query: 181 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA 240
           VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA
Sbjct: 273 VFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPA 332

Query: 241 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 300
           FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF
Sbjct: 333 FFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGF 392

Query: 301 DVSTDPKKQH 311
           DVSTDPKKQH
Sbjct: 393 DVSTDPKKQH 402

[Close]

BLAST of Carg04928 vs. NCBI nr
Match: XP_022150433.1 (protein TIC 22-like, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 240/312 (76.92%), Postives = 260/312 (83.33%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MS  GNDPNSS       E NLRQAL   QN CSG+LH LS+LPPFNPPL  K+      
Sbjct: 30  MSFHGNDPNSS------FERNLRQALYSLQNHCSGLLHTLSHLPPFNPPLPFKTH----- 89

Query: 61  SSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTP-RPYARP--TVALSTEAIEERLA 120
             LQNQ KRALDS IS  DP AKNP+WAR+AE+A T   P ARP    ALSTEAIEERLA
Sbjct: 90  --LQNQPKRALDSAISPSDPAAKNPLWARVAESATTQFSPSARPAAAAALSTEAIEERLA 149

Query: 121 GIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVA 180
           GIPVYALSN++EEFVLVSGASTAKSLG FCF KEDAE LL H+G +D SAQNGSKVV VA
Sbjct: 150 GIPVYALSNSAEEFVLVSGASTAKSLGLFCFKKEDAEALLQHVGMMDASAQNGSKVVPVA 209

Query: 181 LNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSY 240
           LNKVFQLHVNGV FRL+PECSQVKNALSER+KAGIS +GF GVPVFQSKSLILRSQNKSY
Sbjct: 210 LNKVFQLHVNGVTFRLVPECSQVKNALSERKKAGISADGFSGVPVFQSKSLILRSQNKSY 269

Query: 241 RPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIP 300
           RPAFFRKEDLE SL+RAS++QNQ+NPA RPGD+QVA FE++IKGMKDNSISTWDDVVFIP
Sbjct: 270 RPAFFRKEDLEKSLQRASREQNQVNPAFRPGDIQVAGFEEVIKGMKDNSISTWDDVVFIP 328

Query: 301 PGFDVSTDPKKQ 310
           PGFDVSTDPKKQ
Sbjct: 330 PGFDVSTDPKKQ 328

[Close]

BLAST of Carg04928 vs. NCBI nr
Match: XP_008464333.2 (PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 429.1 bits (1102), Expect = 1.3e-116
Identity = 235/313 (75.08%), Postives = 257/313 (82.11%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MSS GNDP SS         NL QAL  FQN CS +LHNLSN      PL LK+QLQSTF
Sbjct: 1   MSSHGNDPISSF-------LNLPQALNSFQNHCSTLLHNLSN------PLPLKTQLQSTF 60

Query: 61  SSLQN-QAKRALDSRISAFDPVA-KNPVWARIAETAKT--PRPYARPTVALSTEAIEERL 120
           S+L N +    L S IS  D V  KNP+WAR+ ETAKT   RP +   ++LSTEAIEERL
Sbjct: 61  STLLNPKPNPPLHSTISPSDSVPNKNPLWARLPETAKTQFSRPSSPSPLSLSTEAIEERL 120

Query: 121 AGIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTV 180
           AGIPVYALSNASEEFVLVSGAST KSLGFFCF K+DAETLL HIGT+DPSA  GSKVV V
Sbjct: 121 AGIPVYALSNASEEFVLVSGASTQKSLGFFCFKKDDAETLLQHIGTMDPSAHYGSKVVPV 180

Query: 181 ALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKS 240
           ALNKVFQLHVNGVAFRLIPECSQVKNAL+ER+KAGIS + F GVPVFQSKSL+LRSQNKS
Sbjct: 181 ALNKVFQLHVNGVAFRLIPECSQVKNALTERKKAGISADEFSGVPVFQSKSLVLRSQNKS 240

Query: 241 YRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFI 300
           YRPAFFRKEDLENSL+ A ++QNQ+NPALRPGD+QVA FE+IIKGMKDNSISTWDD+VFI
Sbjct: 241 YRPAFFRKEDLENSLQSACREQNQINPALRPGDIQVAVFEEIIKGMKDNSISTWDDIVFI 300

Query: 301 PPGFDVSTDPKKQ 310
           PPGFDVSTDPKKQ
Sbjct: 301 PPGFDVSTDPKKQ 300

[Close]

BLAST of Carg04928 vs. TAIR10
Match: AT3G23710.1 (Tic22-like family protein)

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-87
Identity = 179/313 (57.19%), Postives = 230/313 (73.48%), Query Frame = 0


Query: 9   NSSLPKPSQLE---CNLRQALAGFQNQCSGVLHNLSNL--PPFNPPL-SLKSQLQSTFSS 68
           NS++  PS+ +    N++Q+ +  Q+QCS +L N+S    P FN    + K  + S  +S
Sbjct: 2   NSNIFPPSKQQNELNNIQQSFSNLQSQCSNLLLNVSQTLNPLFNANTNNNKPNIFSALNS 61

Query: 69  LQNQAKRALDSRISAFDPVAKNPVWARIAE-----TAKTPRPYARPTVALSTEAIEERLA 128
            ++QAK+ALDSRIS F+   K PVWARI++      A+   P       LS +AIEERLA
Sbjct: 62  FRDQAKQALDSRISRFNS-GKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIEERLA 121

Query: 129 GIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDP-SAQNGSKVVTV 188
           G+PVYALSN++EEFVLVSG S+ KSLG     +EDAETLL  + ++DP   + GSKVV +
Sbjct: 122 GVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSKVVAL 181

Query: 189 ALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKS 248
           AL+KVFQL VNGVAFRLIPE +QVKNAL ER+ AGI D+ F GVPVFQSKSLILRS+N S
Sbjct: 182 ALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRSENMS 241

Query: 249 YRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFI 308
           YRP FFRKEDLE SL RAS  QN++NPAL+PGD+QVA FEDI+KGM++++ S WDD+VFI
Sbjct: 242 YRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRESTTSNWDDIVFI 301

Query: 309 PPGFDVSTDPKKQ 310
           PPGF+VST+  ++
Sbjct: 302 PPGFEVSTEQTQE 313

[Close]

BLAST of Carg04928 vs. TAIR10
Match: AT4G33350.1 (Tic22-like family protein)

HSP 1 Score: 148.3 bits (373), Expect = 7.9e-36
Identity = 85/216 (39.35%), Postives = 125/216 (57.87%), Query Frame = 0


Query: 96  TPRPYA--------RPTVALSTEAIEERLAGIPVYALSNASEEFVLVSGASTAKSLGFFC 155
           TP P+A         PT  LS   + + LAG  V+ +SN + EFVL+S  +  KS+G  C
Sbjct: 51  TPPPFASVSQSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLC 110

Query: 156 FNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPECSQVKNALSER 215
           F +EDAE  L          +  +KVV + L++V+ L V G++FR +P+  Q+KNAL E 
Sbjct: 111 FRQEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-EL 170

Query: 216 EKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLK---RASQDQNQMNPA 275
           + +G + NGF GVPVFQS+ L++R +N+ Y P +F KED+E  L    RAS+   Q    
Sbjct: 171 KSSG-NKNGFDGVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRGDQQ---- 230

Query: 276 LRPGDVQVAAFEDIIKGMK-DNSISTWDDVVFIPPG 300
                + V + ED+++ M+     S W+DV+FIPPG
Sbjct: 231 -----IMVGSLEDVLRKMEMSEKNSGWEDVIFIPPG 255

[Close]

BLAST of Carg04928 vs. Swiss-Prot
Match: sp|F4J469|TI22L_ARATH (Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22L PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.1e-86
Identity = 179/313 (57.19%), Postives = 230/313 (73.48%), Query Frame = 0


Query: 9   NSSLPKPSQLE---CNLRQALAGFQNQCSGVLHNLSNL--PPFNPPL-SLKSQLQSTFSS 68
           NS++  PS+ +    N++Q+ +  Q+QCS +L N+S    P FN    + K  + S  +S
Sbjct: 2   NSNIFPPSKQQNELNNIQQSFSNLQSQCSNLLLNVSQTLNPLFNANTNNNKPNIFSALNS 61

Query: 69  LQNQAKRALDSRISAFDPVAKNPVWARIAE-----TAKTPRPYARPTVALSTEAIEERLA 128
            ++QAK+ALDSRIS F+   K PVWARI++      A+   P       LS +AIEERLA
Sbjct: 62  FRDQAKQALDSRISRFNS-GKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIEERLA 121

Query: 129 GIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDP-SAQNGSKVVTV 188
           G+PVYALSN++EEFVLVSG S+ KSLG     +EDAETLL  + ++DP   + GSKVV +
Sbjct: 122 GVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSKVVAL 181

Query: 189 ALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKS 248
           AL+KVFQL VNGVAFRLIPE +QVKNAL ER+ AGI D+ F GVPVFQSKSLILRS+N S
Sbjct: 182 ALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRSENMS 241

Query: 249 YRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFI 308
           YRP FFRKEDLE SL RAS  QN++NPAL+PGD+QVA FEDI+KGM++++ S WDD+VFI
Sbjct: 242 YRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRESTTSNWDDIVFI 301

Query: 309 PPGFDVSTDPKKQ 310
           PPGF+VST+  ++
Sbjct: 302 PPGFEVSTEQTQE 313

[Close]

BLAST of Carg04928 vs. Swiss-Prot
Match: sp|Q9ZST9|TIC22_PEA (Protein TIC 22, chloroplastic OS=Pisum sativum OX=3888 GN=TIC22 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 85/214 (39.72%), Postives = 124/214 (57.94%), Query Frame = 0


Query: 89  RIAETAKTPRPYARPTVA--LSTEAIEERLAGIPVYALSNASEEFVLVSGASTAKSLGFF 148
           R+A T        +P  A  L+   + + LAG  VY +SN+  EFVL+S A  AKS+G  
Sbjct: 33  RLAGTLIQSHTRTKPAFAATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLL 92

Query: 149 CFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPECSQVKNALSE 208
           CF +EDAE  L  + +     + G+KVV + L++V+ L V G+AFR +P+  Q+KNAL  
Sbjct: 93  CFRQEDAEAFLAQVRSRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNAL-- 152

Query: 209 REKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLKRASQDQNQMNPALR 268
            E    +   F GVPVFQS  L+++ +NK Y P +F KEDLE  L + S+    +  +  
Sbjct: 153 -ELRAANRGSFDGVPVFQSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVSQH 212

Query: 269 PGDVQVAAFEDIIKGMK-DNSISTWDDVVFIPPG 300
              + V +FED++K M+     S W+D+VFIPPG
Sbjct: 213 ---IMVGSFEDVLKKMELSEKSSGWEDLVFIPPG 240

[Close]

BLAST of Carg04928 vs. Swiss-Prot
Match: sp|Q9SZB2|TIC22_ARATH (Protein TIC 22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 85/216 (39.35%), Postives = 125/216 (57.87%), Query Frame = 0


Query: 96  TPRPYA--------RPTVALSTEAIEERLAGIPVYALSNASEEFVLVSGASTAKSLGFFC 155
           TP P+A         PT  LS   + + LAG  V+ +SN + EFVL+S  +  KS+G  C
Sbjct: 51  TPPPFASVSQSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLC 110

Query: 156 FNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPECSQVKNALSER 215
           F +EDAE  L          +  +KVV + L++V+ L V G++FR +P+  Q+KNAL E 
Sbjct: 111 FRQEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-EL 170

Query: 216 EKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLK---RASQDQNQMNPA 275
           + +G + NGF GVPVFQS+ L++R +N+ Y P +F KED+E  L    RAS+   Q    
Sbjct: 171 KSSG-NKNGFDGVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRGDQQ---- 230

Query: 276 LRPGDVQVAAFEDIIKGMK-DNSISTWDDVVFIPPG 300
                + V + ED+++ M+     S W+DV+FIPPG
Sbjct: 231 -----IMVGSLEDVLRKMEMSEKNSGWEDVIFIPPG 255

[Close]

BLAST of Carg04928 vs. TrEMBL
Match: tr|A0A1S3CLN7|A0A1S3CLN7_CUCME (protein TIC 22-like, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502243 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 8.5e-117
Identity = 235/313 (75.08%), Postives = 257/313 (82.11%), Query Frame = 0


Query: 1   MSSQGNDPNSSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNPPLSLKSQLQSTF 60
           MSS GNDP SS         NL QAL  FQN CS +LHNLSN      PL LK+QLQSTF
Sbjct: 1   MSSHGNDPISSF-------LNLPQALNSFQNHCSTLLHNLSN------PLPLKTQLQSTF 60

Query: 61  SSLQN-QAKRALDSRISAFDPVA-KNPVWARIAETAKT--PRPYARPTVALSTEAIEERL 120
           S+L N +    L S IS  D V  KNP+WAR+ ETAKT   RP +   ++LSTEAIEERL
Sbjct: 61  STLLNPKPNPPLHSTISPSDSVPNKNPLWARLPETAKTQFSRPSSPSPLSLSTEAIEERL 120

Query: 121 AGIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTV 180
           AGIPVYALSNASEEFVLVSGAST KSLGFFCF K+DAETLL HIGT+DPSA  GSKVV V
Sbjct: 121 AGIPVYALSNASEEFVLVSGASTQKSLGFFCFKKDDAETLLQHIGTMDPSAHYGSKVVPV 180

Query: 181 ALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKS 240
           ALNKVFQLHVNGVAFRLIPECSQVKNAL+ER+KAGIS + F GVPVFQSKSL+LRSQNKS
Sbjct: 181 ALNKVFQLHVNGVAFRLIPECSQVKNALTERKKAGISADEFSGVPVFQSKSLVLRSQNKS 240

Query: 241 YRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFI 300
           YRPAFFRKEDLENSL+ A ++QNQ+NPALRPGD+QVA FE+IIKGMKDNSISTWDD+VFI
Sbjct: 241 YRPAFFRKEDLENSLQSACREQNQINPALRPGDIQVAVFEEIIKGMKDNSISTWDDIVFI 300

Query: 301 PPGFDVSTDPKKQ 310
           PPGFDVSTDPKKQ
Sbjct: 301 PPGFDVSTDPKKQ 300

[Close]

BLAST of Carg04928 vs. TrEMBL
Match: tr|A0A251R1M5|A0A251R1M5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170300 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 9.4e-108
Identity = 215/316 (68.04%), Postives = 249/316 (78.80%), Query Frame = 0


Query: 5   GNDPN---SSLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNP-PLSLKSQLQSTF 64
           GN  N   SS PK + LE +L+QA    QN CSG LH+LS+ P FNP P SLK+QL+STF
Sbjct: 4   GNSKNAKISSPPKHNPLELSLQQAFTNIQNHCSGFLHHLSHFPVFNPNPSSLKTQLESTF 63

Query: 65  SSLQNQAKRALDSRISAFDP---VAKNPVWARIA---ETAKTPRPYARPTVALSTEAIEE 124
           ++LQNQAK A ++ +S+  P     K PVWARIA   +T  T  P      A+STEAIEE
Sbjct: 64  ANLQNQAKHAFNTGLSSSVPKHSSGKTPVWARIAVNNKTQTTNSPGNGSKAAMSTEAIEE 123

Query: 125 RLAGIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVV 184
           RLAG+PVYALSNA+EEFVLVSGAS+ KSLG FCF KEDAE LL HI  +DP  ++GSKVV
Sbjct: 124 RLAGVPVYALSNAAEEFVLVSGASSGKSLGLFCFKKEDAEALLEHIRIMDPGMRSGSKVV 183

Query: 185 TVALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGIS-DNGFPGVPVFQSKSLILRSQ 244
            VALNKVFQL V+GVAFRLIPE SQVKNAL E+EK G S D+GFPGVPVFQS+SLILRSQ
Sbjct: 184 AVALNKVFQLKVDGVAFRLIPEYSQVKNALKEKEKVGTSDDDGFPGVPVFQSRSLILRSQ 243

Query: 245 NKSYRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDV 304
           +KSYRP FFRKEDLE+SL RAS++QNQ+NPA RPGDVQVA  E++IKGMK+ S STWDDV
Sbjct: 244 SKSYRPVFFRKEDLESSLSRASREQNQLNPAFRPGDVQVAVLEEVIKGMKEGSTSTWDDV 303

Query: 305 VFIPPGFDVSTDPKKQ 310
           VFIPPGFD+STDP KQ
Sbjct: 304 VFIPPGFDISTDPTKQ 319

[Close]

BLAST of Carg04928 vs. TrEMBL
Match: tr|A0A2P6QVV2|A0A2P6QVV2_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0412551 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.4e-106
Identity = 207/295 (70.17%), Postives = 236/295 (80.00%), Query Frame = 0


Query: 21  NLRQALAGFQNQCSGVLHNLSNLPPFNP-PLSLKSQLQSTFSSLQNQAKRALDSRISAFD 80
           NL+QA    Q  CSG LH+LS+LP FNP P SL++ LQS+ S+LQNQAK A  +  S FD
Sbjct: 21  NLQQAFTSLQTHCSGFLHHLSHLPLFNPNPSSLQTHLQSSLSNLQNQAKNAFHAGFSGFD 80

Query: 81  PVAKNPVWARIAETAKTPRPYAR---PTVALSTEAIEERLAGIPVYALSNASEEFVLVSG 140
              +NPVWARIA   KT  P +    P  A+STEAIEERLAG+PVYALSNA+EEFVLVSG
Sbjct: 81  SSKQNPVWARIAVNNKTQFPNSSGDGPGAAMSTEAIEERLAGVPVYALSNAAEEFVLVSG 140

Query: 141 ASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPE 200
           AS+ KSLG FCF KEDAE+LL HI  +DP  ++GSKVV VALNKVFQL V+GVAFRLIPE
Sbjct: 141 ASSGKSLGLFCFKKEDAESLLEHIRVMDPGMRSGSKVVAVALNKVFQLKVDGVAFRLIPE 200

Query: 201 CSQVKNAL--SEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLKRA 260
            SQVKNAL   E+EK G SDNGF GVPVFQS+SLILRSQ+KSYRP FFRKEDLENSL RA
Sbjct: 201 SSQVKNALKEKEKEKGGSSDNGFFGVPVFQSRSLILRSQSKSYRPVFFRKEDLENSLSRA 260

Query: 261 SQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGFDVSTDPKKQ 310
           S++QNQ+NP LRPGD+QVA  ED+IKGMK+ S S WDDVVFIPPGFD+STDP KQ
Sbjct: 261 SREQNQLNPLLRPGDIQVAVLEDVIKGMKEGSTSVWDDVVFIPPGFDISTDPTKQ 315

[Close]

BLAST of Carg04928 vs. TrEMBL
Match: tr|M5XLW7|M5XLW7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023049mg PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 5.7e-105
Identity = 206/296 (69.59%), Postives = 238/296 (80.41%), Query Frame = 0


Query: 22  LRQALAGFQNQCSGVLHNLSNLPPFNP-PLSLKSQLQSTFSSLQNQAKRALDSRISAFDP 81
           L+QA    QN CSG LH+LS+ P FNP P SLK+QL+STF++LQNQAK A ++ +S+  P
Sbjct: 1   LQQAFTNIQNHCSGFLHHLSHFPVFNPNPSSLKTQLESTFANLQNQAKHAFNTGLSSSVP 60

Query: 82  ---VAKNPVWARIA---ETAKTPRPYARPTVALSTEAIEERLAGIPVYALSNASEEFVLV 141
                K PVWARIA   +T  T  P      A+STEAIEERLAG+PVYALSNA+EEFVLV
Sbjct: 61  KHSSGKTPVWARIAVNNKTQTTNSPGNGSKAAMSTEAIEERLAGVPVYALSNAAEEFVLV 120

Query: 142 SGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLI 201
           SGAS+ KSLG FCF KEDAE LL HI  +DP  ++GSKVV VALNKVFQL V+GVAFRLI
Sbjct: 121 SGASSGKSLGLFCFKKEDAEALLEHIRIMDPGMRSGSKVVAVALNKVFQLKVDGVAFRLI 180

Query: 202 PECSQVKNALSEREKAGIS-DNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLKR 261
           PE SQVKNAL E+EK G S D+GFPGVPVFQS+SLILRSQ+KSYRP FFRKEDLE+SL R
Sbjct: 181 PEYSQVKNALKEKEKVGTSDDDGFPGVPVFQSRSLILRSQSKSYRPVFFRKEDLESSLSR 240

Query: 262 ASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGFDVSTDPKKQ 310
           AS++QNQ+NPA RPGDVQVA  E++IKGMK+ S STWDDVVFIPPGFD+STDP KQ
Sbjct: 241 ASREQNQLNPAFRPGDVQVAVLEEVIKGMKEGSTSTWDDVVFIPPGFDISTDPTKQ 296

[Close]

BLAST of Carg04928 vs. TrEMBL
Match: tr|A0A2P5FCK7|A0A2P5FCK7_9ROSA (Tic22-like OS=Trema orientalis OX=63057 GN=TorRG33x02_086590 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.6e-102
Identity = 202/305 (66.23%), Postives = 234/305 (76.72%), Query Frame = 0


Query: 11  SLPKPSQLECNLRQALAGFQNQCSGVLHNLSNLPPFNP-PLSLKSQLQSTFSSLQNQAKR 70
           S PK  Q + NL+QA A FQ+ CSG+ H +S LP FNP P SLK+ LQST S LQN AK 
Sbjct: 13  SPPKQDQPQLNLQQAFATFQHNCSGLFHQVSQLPLFNPNPSSLKTHLQSTLSDLQNHAKN 72

Query: 71  ALDSRISAFDP---VAKNPVWARIAETAK-----TPRPYARPTVALSTEAIEERLAGIPV 130
           A  + IS F P      NPVWARI    +       RP  RP   +STEAIEERLAG+PV
Sbjct: 73  AFAAGISRFQPGPSSGLNPVWARIDRPTRFAAGPNSRP-RRPQTGMSTEAIEERLAGVPV 132

Query: 131 YALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKV 190
           YALSN++EEFVLVSGAS+ KSLG FCF KEDAE LL  I ++DP  ++GSKVV VALNKV
Sbjct: 133 YALSNSAEEFVLVSGASSGKSLGLFCFKKEDAEALLEQIESLDPRMRSGSKVVAVALNKV 192

Query: 191 FQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAF 250
           FQL V+GV+FRLIPE SQVKNAL EREKAG++D+GFPGVPVFQSKSLILRSQNKSYRP F
Sbjct: 193 FQLKVDGVSFRLIPETSQVKNALKEREKAGVTDDGFPGVPVFQSKSLILRSQNKSYRPVF 252

Query: 251 FRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGFD 307
           FRKEDLE SL RAS++Q ++NP  RPG ++VA  E++IKGMK++S S WDDVVFIPPGFD
Sbjct: 253 FRKEDLEKSLIRASREQGRLNPGFRPGQIEVAVLEEVIKGMKESSTSKWDDVVFIPPGFD 312

The following BLAST results are available for this feature:

BLAST of Carg04928 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005035.1	4.0e-171	99.68	protein TIC 22-like, chloroplastic [Cucurbita maxima]	[more]
XP_022959990.1	6.9e-171	99.68	protein TIC 22-like, chloroplastic [Cucurbita moschata]	[more]
XP_023514114.1	2.6e-170	99.35	protein TIC 22-like, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022150433.1	1.7e-124	76.92	protein TIC 22-like, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_008464333.2	1.3e-116	75.08	PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis melo]	[more]

BLAST of Carg04928 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23710.1	1.2e-87	57.19	Tic22-like family protein	[more]
AT4G33350.1	7.9e-36	39.35	Tic22-like family protein	[more]

BLAST of Carg04928 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4J469\|TI22L_ARATH	2.1e-86	57.19	Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22L PE=...	[more]
sp\|Q9ZST9\|TIC22_PEA	1.3e-35	39.72	Protein TIC 22, chloroplastic OS=Pisum sativum OX=3888 GN=TIC22 PE=1 SV=1	[more]
sp\|Q9SZB2\|TIC22_ARATH	1.4e-34	39.35	Protein TIC 22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC22 PE=1 SV=1	[more]

BLAST of Carg04928 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLN7\|A0A1S3CLN7_CUCME	8.5e-117	75.08	protein TIC 22-like, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A251R1M5\|A0A251R1M5_PRUPE	9.4e-108	68.04	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170300 PE=4 SV=1	[more]
tr\|A0A2P6QVV2\|A0A2P6QVV2_ROSCH	1.4e-106	70.17	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0412551 PE=4...	[more]
tr\|M5XLW7\|M5XLW7_PRUPE	5.7e-105	69.59	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023049m...	[more]
tr\|A0A2P5FCK7\|A0A2P5FCK7_9ROSA	2.6e-102	66.23	Tic22-like OS=Trema orientalis OX=63057 GN=TorRG33x02_086590 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR007378	Tic22-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04928-RA	Carg04928-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.1350.100		coord: 106..304 e-value: 2.0E-53 score: 182.9
None	No IPR available	PANTHER	PTHR33926:SF1	PROTEIN TIC 22-LIKE, CHLOROPLASTIC	coord: 11..309
IPR007378	Tic22-like	PFAM	PF04278	Tic22	coord: 59..305 e-value: 1.7E-85 score: 286.2
IPR007378	Tic22-like	PANTHER	PTHR33926	FAMILY NOT NAMED	coord: 11..309

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04928	ClCG08G003630	Watermelon (Charleston Gray)	carwcgB0087
Carg04928	CmaCh08G001020	Cucurbita maxima (Rimu)	carcmaB0112
Carg04928	CmoCh08G001070	Cucurbita moschata (Rifu)	carcmoB0119
Carg04928	Lsi08G003070	Bottle gourd (USVL1VR-Ls)	carlsiB077
Carg04928	MELO3C026126.2	Melon (DHL92) v3.6.1	carmedB0090
Carg04928	Cla97C08G147100	Watermelon (97103) v2	carwmbB0082
Carg04928	Bhi04G001657	Wax gourd	carwgoB0095

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04928	Silver-seed gourd	carcarB093
Carg04928	Cucumber (Gy14) v2	carcgybB0092
Carg04928	Cucurbita maxima (Rimu)	carcmaB0108
Carg04928	Cucurbita maxima (Rimu)	carcmaB0109
Carg04928	Cucurbita moschata (Rifu)	carcmoB0116
Carg04928	Cucurbita moschata (Rifu)	carcmoB0117
Carg04928	Cucurbita pepo (Zucchini)	carcpeB0119
Carg04928	Cucurbita pepo (Zucchini)	carcpeB0120
Carg04928	Cucurbita pepo (Zucchini)	carcpeB0125
Carg04928	Wild cucumber (PI 183967)	carcpiB0096
Carg04928	Wild cucumber (PI 183967)	carcpiB0097
Carg04928	Cucumber (Chinese Long) v2	carcuB0092
Carg04928	Cucumber (Chinese Long) v2	carcuB0093
Carg04928	Cucumber (Chinese Long) v3	carcucB0099
Carg04928	Cucumber (Chinese Long) v3	carcucB0100
Carg04928	Bottle gourd (USVL1VR-Ls)	carlsiB070
Carg04928	Melon (DHL92) v3.5.1	carmeB0080
Carg04928	Melon (DHL92) v3.6.1	carmedB0081
Carg04928	Watermelon (Charleston Gray)	carwcgB0083
Carg04928	Watermelon (Charleston Gray)	carwcgB0086
Carg04928	Watermelon (97103) v1	carwmB0082
Carg04928	Watermelon (97103) v2	carwmbB0078
Carg04928	Watermelon (97103) v2	carwmbB0081
Carg04928	Wax gourd	carwgoB0094