Carg04846 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04846
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tubulin beta chain
Location	Cucurbita_argyrosperma_scaffold_028 : 1274942 .. 1276846 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGAGATTCTGCATATTCAAGGAGGGCAATGCGGGAACCAAATCGGGTCGAAGTTCTGGGAAGTGGTTTGCGACGAGCATGGGATCGACCCGACTGGGCGCTACGCCGGACATTCAGAACTCCAGCTGGAGAGAGCGAGTGTGTATTACAATGAAGCGAGCGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACCATGGACTCCGTTAGGACCGGGCCGTACGGCCAGATTTTCCGACCAGACAACTTCGTGTTCGGCCAATCCGGCGCCGGCAACAATTGGGCTAAAGGCCATTACACAGAAGGTGCAGAGCTTATTGATACGCAATTGAGTGTGAATTCGATCCACCACCTGACTAGATCAATCATATATATTTGTTGAGGATTGTTGGTGTGGAGTCCCACATCGGCTAATTAAGGAACATATCTTCGAGACCTTTCAAGGTTATATTCAAAATGGACAGACAATATCATACTATTGTTGGGGAGGTTCGTAATTTCTAATTTCTAATTTCTAACTTATATAACTGTTTCAGGGTTTCAAGTGTGTCACTCACTTGGAGGAGGAACAGGATCTGGAATGGGGACTCTTCTAATCTCCAAGATTAGGGAAGAATATCCGGATAGAATGATGATGACTTTCTCAGTGTTTCCATCTCCAAAGGTGTCAGACACTGTTGTGGAGCCATATAATGCTACTCTTTCAGTGCATCAGCTGGTAGAGAATGCTGATGAATGTATGGTACTTGACAATGAAGCACTCTATGATATCTGTTTTAGGACCCTCAAGCTCACCACTCCAAGTTGTAAGTACCTTCAAATTTAGACGATTGAAGCATTTGATTGTACCCTGCAAGTTCTAAAAAATTGATGTTTCTTCTACTTTCTTCAGTCGGGGACTTGAACCATCTAATTTCAGCAACAATGAGTGGAGTTACCTGCTGCCTGAGATTCCCTGGCCAGCTGAATTCCGACCTCCGAAAACTAGCTGTGAACTTGATCCCTTTCCCACGGCTTCACTTTTTCATGGTTGGATTTGCACCTTTGACCTCTCGTGGATCGCAGCAGTACATAACGCTGACTGTTTCTGAACTGACACAACAAATGTGGGATGCCAAGAACATGATGTGTGCAGCGGATCCACGCCATGGTAGATATCTTACGGCGTCTGCCATGTTTCGAGGTAAAATGAGTACGAAAGAAGTAGACGAGCAGATGATGAACGTGCAGAACAAGAACTCTTCGTATTTTGTAGAATGGATTCCAAACAATGTGAAATCTAGTGTTTGTGACATTCCACCAAAAGGGTTCCCATTGGCTTCCACTTTTGTTGGAAACTCAACTTCAATACAGGAGATGTTTAGAAGAGTGAGTGAGCAGTTCACGGCCATGTTTAGAAGGAAGGCCTTCTTGCATTGGTATACAGGAGAGGGAATGGATGAGATGGAGTTTTCTGAAGCAGAAAGCAACATGAATGATCTTGTTGCTGAGTATCAACAGTATCAAGATGCCACTGCTGATGAAGAGATTGACTATGGAGATGATGATGCTGGGGATGCCGAAAATTGAGCTGTTTCGTGTCATCGTAGACGATCCAGCAATGTTCGAGGTTATGTCAGTGAGTATAAATAGTCATGTAGTAACATGGTGTTGTGCTGCAGATTGCAAATCTCAAATCCAAATATGAAAGAAATCTGTGTTGTATCGTGTATGTTCCCAAGTTGTTGCTGTACTAACAAAGCCATATCAATGAAGTAAAAAGTTCCTTTTCTCCATTTTAGACTTCTATAAACAGGAAGAAAGCATAACTCGTACACGAGAAGTCGTGGTCATTCAAGAACATTTTGTGGACGAACAAGAAATTGTTTCTAAACACATCGTTTAG

mRNA sequence

ATGCGTGAGATTCTGCATATTCAAGGAGGGCAATGCGGGAACCAAATCGGGTCGAAGTTCTGGGAAGTGGTTTGCGACGAGCATGGGATCGACCCGACTGGGCGCTACGCCGGACATTCAGAACTCCAGCTGGAGAGAGCGAGTGTGTATTACAATGAAGCGAGCGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACCATGGACTCCGTTAGGACCGGGCCGTACGGCCAGATTTTCCGACCAGACAACTTCGTGTTCGGCCAATCCGGCGCCGGCAACAATTGGGCTAAAGGCCATTACACAGAAGACTTCTATAAACAGGAAGAAAGCATAACTCGTACACGAGAAGTCGTGGTCATTCAAGAACATTTTGTGGACGAACAAGAAATTGTTTCTAAACACATCGTTTAG

Coding sequence (CDS)

ATGCGTGAGATTCTGCATATTCAAGGAGGGCAATGCGGGAACCAAATCGGGTCGAAGTTCTGGGAAGTGGTTTGCGACGAGCATGGGATCGACCCGACTGGGCGCTACGCCGGACATTCAGAACTCCAGCTGGAGAGAGCGAGTGTGTATTACAATGAAGCGAGCGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACCATGGACTCCGTTAGGACCGGGCCGTACGGCCAGATTTTCCGACCAGACAACTTCGTGTTCGGCCAATCCGGCGCCGGCAACAATTGGGCTAAAGGCCATTACACAGAAGACTTCTATAAACAGGAAGAAAGCATAACTCGTACACGAGAAGTCGTGGTCATTCAAGAACATTTTGTGGACGAACAAGAAATTGTTTCTAAACACATCGTTTAG

Protein sequence

MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEDFYKQEESITRTREVVVIQEHFVDEQEIVSKHIV

Homology

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BLAST of Carg04846 vs. NCBI nr
Match: XP_022923716.1 (tubulin beta chain-like [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 3.3e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

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BLAST of Carg04846 vs. NCBI nr
Match: XP_023001101.1 (tubulin beta chain-like [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 3.3e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. NCBI nr
Match: XP_023519684.1 (tubulin beta chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 3.3e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

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BLAST of Carg04846 vs. NCBI nr
Match: XP_022136985.1 (tubulin beta chain-like [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIG+KFWEVVCDEHGIDPTGRYAG+SELQLERASVYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYAGNSELQLERASVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

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BLAST of Carg04846 vs. NCBI nr
Match: XP_004137501.1 (PREDICTED: tubulin beta chain [Cucumis sativus] >KGN64172.1 hypothetical protein Csa_1G042790 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG+SELQLERA+VYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMD+VRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TAIR10
Match: AT5G12250.1 (beta-6 tubulin)

HSP 1 Score: 225.3 bits (573), Expect = 2.3e-59
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+S+LQLER +VYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TAIR10
Match: AT1G75780.1 (tubulin beta-1 chain)

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-57
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHS-ELQLERASVYYNEASGGRY 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S +LQLER +VYYNEASGGRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109

[Close]

BLAST of Carg04846 vs. TAIR10
Match: AT1G20010.1 (tubulin beta-5 chain)

HSP 1 Score: 215.7 bits (548), Expect = 1.8e-56
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGH-SELQLERASVYYNEASGGRY 60
           MREILHIQGGQCGNQIGSKFWEV+CDEHGID TGRY+G  ++LQLER +VYYNEASGGRY
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           VPRAVLMDLEPGTMDS+R+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 109

[Close]

BLAST of Carg04846 vs. TAIR10
Match: AT5G62690.1 (tubulin beta chain 2)

HSP 1 Score: 214.2 bits (544), Expect = 5.4e-56
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTGRY G S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TAIR10
Match: AT5G62700.1 (tubulin beta chain 3)

HSP 1 Score: 214.2 bits (544), Expect = 5.4e-56
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTGRY G S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. Swiss-Prot
Match: sp|P29514|TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-58
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+S+LQLER +VYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

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BLAST of Carg04846 vs. Swiss-Prot
Match: sp|Q76FS3|TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-58
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. Swiss-Prot
Match: sp|Q43594|TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. Swiss-Prot
Match: sp|Q9ZRB2|TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum OX=4565 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. Swiss-Prot
Match: sp|Q9ZPN7|TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica OX=29674 GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TrEMBL
Match: tr|A0A1S3CL96|A0A1S3CL96_CUCME (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103502193 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.0e-58
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG+SELQLERA+VYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMD+VRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TrEMBL
Match: tr|A0A0A0LTS3|A0A0A0LTS3_CUCSA (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G042790 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.0e-58
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG+SELQLERA+VYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMD+VRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TrEMBL
Match: tr|A0A2P4JHH4|A0A2P4JHH4_QUESU (Tubulin beta-4 chain OS=Quercus suber OX=58331 GN=CFP56_30265 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+SELQLER +VYYNEAS GRYV
Sbjct: 110 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSELQLERVNVYYNEASCGRYV 169

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 170 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 217

[Close]

BLAST of Carg04846 vs. TrEMBL
Match: tr|A0A061FUV6|A0A061FUV6_THECC (Tubulin beta chain OS=Theobroma cacao OX=3641 GN=TCM_012758 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.5e-56
Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG Y G+SELQLER SVYYNEASGGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCGEHGIDPTGGYTGNSELQLERISVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

[Close]

BLAST of Carg04846 vs. TrEMBL
Match: tr|A0A067JIX0|A0A067JIX0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_27081 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.5e-56
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYV 60
           MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+S+LQ+ER +VYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQIERVNVYYNEASNGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109
           PRAVLMDLEPGTMDS+RTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 61  PRAVLMDLEPGTMDSIRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

The following BLAST results are available for this feature:

BLAST of Carg04846 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923716.1	3.3e-59	100.00	tubulin beta chain-like [Cucurbita moschata]	[more]
XP_023001101.1	3.3e-59	100.00	tubulin beta chain-like [Cucurbita maxima]	[more]
XP_023519684.1	3.3e-59	100.00	tubulin beta chain-like [Cucurbita pepo subsp. pepo]	[more]
XP_022136985.1	4.7e-58	98.15	tubulin beta chain-like [Momordica charantia]	[more]
XP_004137501.1	1.1e-57	97.22	PREDICTED: tubulin beta chain [Cucumis sativus] >KGN64172.1 hypothetical protein...	[more]

BLAST of Carg04846 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12250.1	2.3e-59	93.52	beta-6 tubulin	[more]
AT1G75780.1	1.3e-57	89.91	tubulin beta-1 chain	[more]
AT1G20010.1	1.8e-56	88.99	tubulin beta-5 chain	[more]
AT5G62690.1	5.4e-56	88.89	tubulin beta chain 2	[more]
AT5G62700.1	5.4e-56	88.89	tubulin beta chain 3	[more]

BLAST of Carg04846 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P29514\|TBB6_ARATH	4.2e-58	93.52	Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1	[more]
sp\|Q76FS3\|TBB6_ORYSJ	7.2e-58	94.44	Tubulin beta-6 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB6 PE=2 SV=1	[more]
sp\|Q43594\|TBB1_ORYSJ	2.1e-57	93.52	Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2	[more]
sp\|Q9ZRB2\|TBB1_WHEAT	2.1e-57	93.52	Tubulin beta-1 chain OS=Triticum aestivum OX=4565 GN=TUBB1 PE=2 SV=1	[more]
sp\|Q9ZPN7\|TBB4_ELEIN	2.1e-57	93.52	Tubulin beta-4 chain OS=Eleusine indica OX=29674 GN=TUBB4 PE=2 SV=1	[more]

BLAST of Carg04846 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CL96\|A0A1S3CL96_CUCME	7.0e-58	97.22	Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103502193 PE=3 SV=1	[more]
tr\|A0A0A0LTS3\|A0A0A0LTS3_CUCSA	7.0e-58	97.22	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G042790 PE=3 SV=1	[more]
tr\|A0A2P4JHH4\|A0A2P4JHH4_QUESU	3.8e-56	94.44	Tubulin beta-4 chain OS=Quercus suber OX=58331 GN=CFP56_30265 PE=3 SV=1	[more]
tr\|A0A061FUV6\|A0A061FUV6_THECC	6.5e-56	95.37	Tubulin beta chain OS=Theobroma cacao OX=3641 GN=TCM_012758 PE=3 SV=1	[more]
tr\|A0A067JIX0\|A0A067JIX0_JATCU	6.5e-56	92.59	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_27081 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **INTERPRO**
Term	Definition
IPR013838	Beta-tubulin_BS
IPR003008	Tubulin_FtsZ_GTPase
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR002453	Beta_tubulin
IPR000217	Tubulin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04846-RA	Carg04846-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 51..70 score: 68.16 coord: 93..104 score: 76.26 coord: 10..30 score: 71.85
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..109
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 88..99 score: 94.76 coord: 41..58 score: 70.89
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	G3DSA:3.40.50.1440		coord: 1..130 e-value: 2.4E-51 score: 176.7
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..118
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..122 e-value: 2.8E-28 score: 99.4
None	No IPR available	PANTHER	PTHR11588:SF106	TUBULIN BETA-6 CHAIN	coord: 1..109
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04846	Cla97C04G077490	Watermelon (97103) v2	carwmbB0409
Carg04846	Bhi08G001074	Wax gourd	carwgoB0473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04846	Silver-seed gourd	carcarB411
Carg04846	Silver-seed gourd	carcarB416
Carg04846	Silver-seed gourd	carcarB418
Carg04846	Cucumber (Gy14) v2	carcgybB0393
Carg04846	Cucumber (Gy14) v2	carcgybB0394
Carg04846	Cucumber (Gy14) v1	carcgyB0449
Carg04846	Cucumber (Gy14) v1	carcgyB0452
Carg04846	Cucurbita maxima (Rimu)	carcmaB0538
Carg04846	Cucurbita maxima (Rimu)	carcmaB0540
Carg04846	Cucurbita maxima (Rimu)	carcmaB0541
Carg04846	Cucurbita moschata (Rifu)	carcmoB0524
Carg04846	Cucurbita moschata (Rifu)	carcmoB0526
Carg04846	Cucurbita moschata (Rifu)	carcmoB0527
Carg04846	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04846	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04846	Cucurbita pepo (Zucchini)	carcpeB0548
Carg04846	Wild cucumber (PI 183967)	carcpiB0418
Carg04846	Wild cucumber (PI 183967)	carcpiB0419
Carg04846	Cucumber (Chinese Long) v2	carcuB0415
Carg04846	Cucumber (Chinese Long) v2	carcuB0416
Carg04846	Cucumber (Chinese Long) v3	carcucB0418
Carg04846	Cucumber (Chinese Long) v3	carcucB0419
Carg04846	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04846	Bottle gourd (USVL1VR-Ls)	carlsiB359
Carg04846	Melon (DHL92) v3.5.1	carmeB0393
Carg04846	Melon (DHL92) v3.5.1	carmeB0396
Carg04846	Melon (DHL92) v3.6.1	carmedB0397
Carg04846	Melon (DHL92) v3.6.1	carmedB0400
Carg04846	Watermelon (Charleston Gray)	carwcgB0383
Carg04846	Watermelon (Charleston Gray)	carwcgB0388
Carg04846	Watermelon (97103) v1	carwmB0387
Carg04846	Watermelon (97103) v1	carwmB0391
Carg04846	Watermelon (97103) v2	carwmbB0415