Carg04796 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04796
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Single-stranded DNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_028 : 986653 .. 989634 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTTTAAGCCATTTCGCTGAATTTCTGCATTTTTCTTTGGATTGGCAACTGTGAAGACGATGACCTCCATGGCTGTTCTGTCGAGAAGGCTCTTTCGTTCTCTGCTGTCGAATTCTAAAGCTTCTCATCATCACGACATCCTACCCGTGATCTGTAGCTCGAAGAACCTTTCCTTCCGCTCGATCTCAGACATCGGCGAGTCCAGTATTGGCTCGGACATGGACTTGGACTCACATTCAGTATCTAATCGACCTTCTCTCTCACCGTCCTCGTCCCAGACGAGAACCATCTATAATCGACCTCTGGAAAATGGCCTTGATGCTGGCATTTATAAGGTACGTTGATATACGACTGCTTTGGGACTTTCGGTTCTTGATATTTGATTGCTTACAGTTTAATCTTAATGGCATTTCGTGTTTTCGTGAAGGCTATATTGGTGGGGCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAAAGTGGGAGAACGGTGACGCTGTTATCAGTTGGTACGGGCGGTATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCCAGAGAGTATGCGAATCGGTGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTTGTCATGAAGCATGTTGTGCCCGGGTAAGCATGTTCTGCCACCAATTGCTGTGACCATCTTAATCAAAGTATTGACAGTGTCCAATGGAAATTGAATATTTTGTTTTCTGATTCTTGTACCCCTTGTTGCTCACAAAAAATAATATTAGGAGTCTTTGTTTCCCCATTTCTTTGTTGCAGCTTCATCTTTACCGTGTAAATTTATCTTTTTCCAGTTCAATTTTATATTTGGAGGGGAATTTAGAGACCAAAATCTTCACTGATTCAATCACTGGTCTTGTTCGACGCATTAGAGAAGTTGCCATTCGCCGCAGTGGTACAGCACTTGCTCTTTTCTACTCACCCTGTTTTTATGAATGTAAAGTTCCTCATTATATGTATTCTGGCTCTTTCCGATGCAAATGCCATTTCTTGGACGTGATACATTTTTTAAACTGAAAGAGCAAACTTATTCTTCTTGCGTAGGCTGAAAAACCTATATGGGTTCCAACTGGTGTTTGAATTTGAACTTTGGGTCCCTGATTTTCCGTTTTCCCTTTTCTTGTTTCGTTTTTTTTTTTTTTTTTGATTGCCTGATCCTCTGTGAACCAGAAGGTTTACAAAGAATTTGACGGCTTTTGTGCGACTTGGCATTCATGTATGTTGAAATTAATGGCGCAAGGTCACACATGATCTCCGTTGATAAAAGTTTGGTTGTGATGTAGGCCGCCTGGTATTTTTGGGCAAGGGAGAAGGCGATGTTCAGCAGTCCACTCAATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGCTTGCAGTGTTGTCATATGAAGGTCTGAATGACCCACTTTTCTCTCTAAATGCTGTGATGATTTCGCTTCAGATTAGTTGCAACAAGGCAATTACATGGCCTTGTGATGATTCCCTTTCCCCCACCCCTTTGTCAAGTGATGAATGTTTTTGGTAGCTATATGATTGAGAGAGAAAGGAAATCCAAAGTTGACTTGGCTTTCTCTATGCAACTTCCTGTTTTTCAATTGTGCAAACGACACCCTGTTTCTTTTGTGATGTTTTCTGTATAGTTGCAGTGGTCATGGGCATAATTTGGGTTAGACAGAGGGAATGCTGGCTTTTTGTGAAACGATATCAATGTTTTCAAAGCGCAAGACAAACTCTGAAGGGTTGCTAGAGACACATGCATAAGTAATGGAGGCACACAATGTATGAGTGAGTAGGTTGATTGACAATTGAAATACAAATACGTGATAACTTATGCCATAATTGGGAATGATTGAGTACTGTTCATTGATGCCATGTATTTTCAATAATAGACATTAAATGCCAATGGAATTTTCTAGTCAAAAGATACTATGAATATGCCCGAAGATTGTCTTCGGTCCTAATGGTGCAGGAAGGGACAAAAAGAGGATATAACACACACACACAAAAAAAAAACGATGGCGACTAAGATGATTGCGTGTTATAACTCTTCGGTTTAAAAAAAATACTCTTTATGTTTTATAAATGTTTCAAAATTGTCTTTAGAATACAAAAATTGTTAGAATGTAGACGAAAAATTGATGTGTTTAATTATCGTTCTTATGGACTTGAGGAAAACAAGTATTTTTCCTCTGAAGTATTTTAGTTGTGATCATTTAAAAAGGACTCTATTACGAGGATGATTTTATGCACAAGAAAATCTGCGATGTCTTCTGCCCAAAAAACATAAATCGAAGCAATGGAATCAACAAACTAGAAAAGAAATTTCTTCATCCGCGGAAGCTTCCCAAATGTTCCATCACCAAATAATGTTGCAGAATCTCACGCTGTGTAGAAGGCTGATCACGGGTCTTTTTAACCATCTTGAATACGATGCAGTATGGTGCTCGCGACCCTGTTAGTGACTGCCATTGCGTCATAATTAAATGTCGCCAACTCTATCTTGGAGGATGCTCGACTAAGAATATGGACCCATCTCACCGCTGAGAGGTGAAAGCAATTCTCTCTTCTTCTCTTCGGCTCTCATGCCAAGACCCATTTTACACTCCAAAGCTGAGGCTGCAGAAAGCTTGGATGAAGAATCATTGTGTCCCAAAGAAGGCCCTCGTTTTACAGAGCCTCACCAAGCGTGCATTTATTGATATCTCCGTTGATGGAGAGCCTGCTGGTCGCATTATCATTGGCCTTTATGGTGACGACGCCCTTGCAGGAGTTGCTAGGTTTACTAACCTTGTAAGTGGAGCTGCAGGGATTTCTTACAGAAGAAAAGACTTTGTAAAGATCACATCAAACTATGTTCAGGACAGTGGAGTGAGATCTTACGGTGTGGATGTTGAGCTCGCAAAGAGGAAGGGAATGAGTTAG

mRNA sequence

TAGGGTTTAAGCCATTTCGCTGAATTTCTGCATTTTTCTTTGGATTGGCAACTGTGAAGACGATGACCTCCATGGCTGTTCTGTCGAGAAGGCTCTTTCGTTCTCTGCTGTCGAATTCTAAAGCTTCTCATCATCACGACATCCTACCCGTGATCTGTAGCTCGAAGAACCTTTCCTTCCGCTCGATCTCAGACATCGGCGAGTCCAGTATTGGCTCGGACATGGACTTGGACTCACATTCAGTATCTAATCGACCTTCTCTCTCACCGTCCTCGTCCCAGACGAGAACCATCTATAATCGACCTCTGGAAAATGGCCTTGATGCTGGCATTTATAAGGCTATATTGGTGGGGCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAAAGTGGGAGAACGGTGACGCTGTTATCAGTTGGTACGGGCGGTATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCCAGAGAGTATGCGAATCGGTGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTTGTCATGAAGCATGTTGTGCCCGGTTCAATTTTATATTTGGAGGGGAATTTAGAGACCAAAATCTTCACTGATTCAATCACTGGTCTTGTTCGACGCATTAGAGAAGTTGCCATTCGCCGCAGTGGCCGCCTGGTATTTTTGGGCAAGGGAGAAGGCGATGTTCAGCAGTCCACTCAATCAGAATTCAAAGACCCATTTTACACTCCAAAGCTGAGGCTGCAGAAAGCTTGGATGAAGAATCATTGTGTCCCAAAGAAGGCCCTCGTTTTACAGAGCCTCACCAAGCGTGCATTTATTGATATCTCCGTTGATGGAGAGCCTGCTGGTCGCATTATCATTGGCCTTTATGGTGACGACGCCCTTGCAGGAGTTGCTAGGTTTACTAACCTTGTAAGTGGAGCTGCAGGGATTTCTTACAGAAGAAAAGACTTTGTAAAGATCACATCAAACTATGTTCAGGACAGTGGAGTGAGATCTTACGGTGTGGATGTTGAGCTCGCAAAGAGGAAGGGAATGAGTTAG

Coding sequence (CDS)

ATGACCTCCATGGCTGTTCTGTCGAGAAGGCTCTTTCGTTCTCTGCTGTCGAATTCTAAAGCTTCTCATCATCACGACATCCTACCCGTGATCTGTAGCTCGAAGAACCTTTCCTTCCGCTCGATCTCAGACATCGGCGAGTCCAGTATTGGCTCGGACATGGACTTGGACTCACATTCAGTATCTAATCGACCTTCTCTCTCACCGTCCTCGTCCCAGACGAGAACCATCTATAATCGACCTCTGGAAAATGGCCTTGATGCTGGCATTTATAAGGCTATATTGGTGGGGCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAAAGTGGGAGAACGGTGACGCTGTTATCAGTTGGTACGGGCGGTATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCCAGAGAGTATGCGAATCGGTGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTTGTCATGAAGCATGTTGTGCCCGGTTCAATTTTATATTTGGAGGGGAATTTAGAGACCAAAATCTTCACTGATTCAATCACTGGTCTTGTTCGACGCATTAGAGAAGTTGCCATTCGCCGCAGTGGCCGCCTGGTATTTTTGGGCAAGGGAGAAGGCGATGTTCAGCAGTCCACTCAATCAGAATTCAAAGACCCATTTTACACTCCAAAGCTGAGGCTGCAGAAAGCTTGGATGAAGAATCATTGTGTCCCAAAGAAGGCCCTCGTTTTACAGAGCCTCACCAAGCGTGCATTTATTGATATCTCCGTTGATGGAGAGCCTGCTGGTCGCATTATCATTGGCCTTTATGGTGACGACGCCCTTGCAGGAGTTGCTAGGTTTACTAACCTTGTAAGTGGAGCTGCAGGGATTTCTTACAGAAGAAAAGACTTTGTAAAGATCACATCAAACTATGTTCAGGACAGTGGAGTGAGATCTTACGGTGTGGATGTTGAGCTCGCAAAGAGGAAGGGAATGAGTTAG

Protein sequence

MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHSVSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFYTPKLRLQKAWMKNHCVPKKALVLQSLTKRAFIDISVDGEPAGRIIIGLYGDDALAGVARFTNLVSGAAGISYRRKDFVKITSNYVQDSGVRSYGVDVELAKRKGMS

Homology

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BLAST of Carg04796 vs. NCBI nr
Match: XP_022923669.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923670.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923671.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 1.1e-116
Identity = 222/227 (97.80%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHS 60
           MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDM+LDSHS
Sbjct: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMNLDSHS 60

Query: 61  VSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG 120
           VSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG
Sbjct: 61  VSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG 120

Query: 121 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 180
           TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK
Sbjct: 121 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 180

Query: 181 IFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           IFTDS TGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFK   Y
Sbjct: 181 IFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKGVGY 227

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BLAST of Carg04796 vs. NCBI nr
Match: XP_023000724.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000725.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000726.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 7.3e-102
Identity = 203/231 (87.88%), Postives = 204/231 (88.31%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHS 60
           MTSMAVLSRRLFRS LSNSKASHHHDILPVI SSKNLSFRS+SDIGESSI SDMDL SHS
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHS 60

Query: 61  V----SNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120
           V                  TIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL
Sbjct: 61  VXXXXXXXXXXXXXXXXXXTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           LETKIFTDS TGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQ EFK   Y
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGY 231

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BLAST of Carg04796 vs. NCBI nr
Match: XP_023519718.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519719.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519720.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.3 bits (970), Expect = 2.8e-101
Identity = 201/231 (87.01%), Postives = 205/231 (88.74%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHS 60
           MTSMAVLSRRLFRS LSNSKAS+HHD+LPVI SSKNLSFRS+SDIGESSI SDMDL SHS
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASNHHDVLPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHS 60

Query: 61  V----SNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120
           V                  TIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL
Sbjct: 61  VXXXXXXXXXXXXXXXXXXTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           LETKIFTDS TGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEF+   Y
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFRGVGY 231

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BLAST of Carg04796 vs. NCBI nr
Match: XP_011650431.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >KGN64102.1 hypothetical protein Csa_1G042140 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 1.6e-96
Identity = 190/233 (81.55%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDM--DLDS 60
           MTSM  LSRRL RSLLSNSKASHH+DILPV   + NLSFRS+SDI ES I SD+  +LDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  HSVSNRPSLSPSSSQT----RTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120
           +SV+N+PSLSPSSSQ+    R +YNRPLENGLDAGIYKAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLG++VMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           GNLETKIFTD +TGLVRRIREVAIR +GRLVFLGKGEG+ Q+ST SEF+   Y
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGY 233

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BLAST of Carg04796 vs. NCBI nr
Match: XP_023541983.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 1.6e-85
Identity = 175/227 (77.09%), Postives = 189/227 (83.26%), Query Frame = 0


Query: 2   TSMAVL-SRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHS 61
           +SMA L SR L RSLL  SK SH   ILP+   + NL  RS+SD   SSI SD +LDSHS
Sbjct: 3   SSMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHS 62

Query: 62  VSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG 121
           V NR S S SS+QTR +YNRPLENGLDAGIYKAILVGQVGQ PLQKQLKSGRTVTLLSVG
Sbjct: 63  VPNRSSASQSSTQTRPVYNRPLENGLDAGIYKAILVGQVGQRPLQKQLKSGRTVTLLSVG 122

Query: 122 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 181
           TGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLGDV MKHVVPGS+LYLEGNLETK
Sbjct: 123 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 182

Query: 182 IFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           IF+D  TG+VRRIRE+AIRR+GRLVFLGKG  D Q STQSEFK   Y
Sbjct: 183 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGY 226

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BLAST of Carg04796 vs. TAIR10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-65
Identity = 138/227 (60.79%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 3   SMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHSVS 62
           SMA LSRRL+RSLLSN + S          +S +    +I+    S   SD D     + 
Sbjct: 4   SMATLSRRLYRSLLSNPRISQ---------ASMSFCTNNIT----SPEDSDFDELESPIE 63

Query: 63  NRPS--LSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG 122
            + S  +S  S + R +  RPLENGLD+GI+KAILVGQVGQ PLQK+LKSGRTVTL SVG
Sbjct: 64  PKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVG 123

Query: 123 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 182
           TGGIRNNRRPL NE+PREYA+R AVQWHRVS+YP+RL D+V+K+V PG+++YLEGNLETK
Sbjct: 124 TGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETK 183

Query: 183 IFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           IFTD +TGLVRRIREVAIRR+GR+VFLGK  GD+QQ + +E +   Y
Sbjct: 184 IFTDPVTGLVRRIREVAIRRNGRVVFLGKA-GDMQQPSSAELRGVGY 216

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BLAST of Carg04796 vs. TAIR10
Match: AT1G74070.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-25
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 254 TKRAFIDISVDGEPAGRIIIGLYGDDALAGVARFTNLVSGAAGISYRRKDFVKITSNYVQ 313
           TK+AFID+S+DGEP GRIIIGLYGDD  AG ARF+++VSG AGI+YRRKDFVKI   YVQ
Sbjct: 91  TKKAFIDVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYVQ 150

Query: 314 DSGVRSYGVDVELA 328
             G+RSYGVD E A
Sbjct: 151 HGGIRSYGVDAERA 164

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BLAST of Carg04796 vs. TAIR10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-23
Identity = 64/193 (33.16%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 19  SKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHSVSNRPSLSPSSSQTRTIY 78
           SK      I P+  S++  S +S    G    G + D +  +V+ RP L P     R  +
Sbjct: 9   SKVLRSSSISPLAISAERGS-KSWFSTGPIDEGVEEDFE-ENVTERPELQPHGVDPRKGW 68

Query: 79  NRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPRE 138
                     G+++AI+ G+VGQ+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+ 
Sbjct: 69  G-------FRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK- 128

Query: 139 YANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAI 198
                  QWHR++++ + LG   ++ +   S +Y+EG++ET+++ DSI+  V+ I E+ +
Sbjct: 129 -----PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICV 186

Query: 199 RRSGRLVFLGKGE 212
           RR G++  +  GE
Sbjct: 189 RRDGKIRMIKYGE 186

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BLAST of Carg04796 vs. TAIR10
Match: AT5G13120.1 (cyclophilin 20-2)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-06
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 225 PFYTPKLRLQKAWMK-NH---CVPKKALVL----QSLTKRAFIDISVD---GEPAGRIII 284
           PF    L L  ++ K NH    V   A V+      +T + + DISV    G+ AGRI+I
Sbjct: 52  PFSASSLLLHTSYTKRNHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVI 111

Query: 285 GLYGDDALAGVARFTNLVSGAAGISYRRKDFVKITSNYVQDSG 317
           GLYGDD    V  F  L +G  G  Y+   F ++  +++   G
Sbjct: 112 GLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGG 154

[Close]

BLAST of Carg04796 vs. TAIR10
Match: AT4G34960.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-05
Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 245 KKALVLQSLTKRAFIDISVDGEPAGRIIIGLYGDDALAGVARFTNLVSGAAG-------I 304
           K+ +    +T R F+D+ +DG+  GRI+IGLYG      V  F  L +G  G       +
Sbjct: 37  KQVIEDHEITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPL 96

Query: 305 SYRRKDFVKITSNYVQDSG 317
            Y+   F +I S +V   G
Sbjct: 97  HYKGTPFHRIISGFVIQGG 115

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BLAST of Carg04796 vs. Swiss-Prot
Match: sp|F4HTT6|CP26B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP26-2 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-24
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 254 TKRAFIDISVDGEPAGRIIIGLYGDDALAGVARFTNLVSGAAGISYRRKDFVKITSNYVQ 313
           TK+AFID+S+DGEP GRIIIGLYGDD  AG ARF+++VSG AGI+YRRKDFVKI   YVQ
Sbjct: 91  TKKAFIDVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYVQ 150

Query: 314 DSGVRSYGVDVELA 328
             G+RSYGVD E A
Sbjct: 151 HGGIRSYGVDAERA 164

[Close]

BLAST of Carg04796 vs. Swiss-Prot
Match: sp|Q84J78|SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-22
Identity = 64/193 (33.16%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 19  SKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHSVSNRPSLSPSSSQTRTIY 78
           SK      I P+  S++  S +S    G    G + D +  +V+ RP L P     R  +
Sbjct: 9   SKVLRSSSISPLAISAERGS-KSWFSTGPIDEGVEEDFE-ENVTERPELQPHGVDPRKGW 68

Query: 79  NRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPRE 138
                     G+++AI+ G+VGQ+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+ 
Sbjct: 69  G-------FRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK- 128

Query: 139 YANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAI 198
                  QWHR++++ + LG   ++ +   S +Y+EG++ET+++ DSI+  V+ I E+ +
Sbjct: 129 -----PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICV 186

Query: 199 RRSGRLVFLGKGE 212
           RR G++  +  GE
Sbjct: 189 RRDGKIRMIKYGE 186

[Close]

BLAST of Carg04796 vs. Swiss-Prot
Match: sp|Q9RHF4|SSB2_SALTI (Single-stranded DNA-binding protein 2 OS=Salmonella typhi OX=90370 GN=ssb2 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 89  GIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 148
           G+ K ILVG +GQ P  + + +G  V  LS+ T     +++    +E  E        WH
Sbjct: 5   GVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTE--------WH 64

Query: 149 RVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAIRRSGRLVFLG 208
           RV +Y  +L ++  +++  GS +Y+EG L T+ +TD  +G+ +   EV + +SG +  LG
Sbjct: 65  RVVLY-GKLAEIASEYLRKGSQVYIEGALRTRKWTDQ-SGVEKYTTEVVVSQSGTMQMLG 114

[Close]

BLAST of Carg04796 vs. Swiss-Prot
Match: sp|Q8D254|SSB_WIGBR (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 89  GIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 148
           GI K IL+G +GQ P  + + +G  +T LS+ T     N R     E +E       +WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEWH 64

Query: 149 RVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAIRRSGRLVFLG 208
           RV ++  +L +V  +++  GS +Y+EGNL+T+ + D   G  R I E+ +  +G +  LG
Sbjct: 65  RVILF-GKLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQMLG 114

[Close]

BLAST of Carg04796 vs. Swiss-Prot
Match: sp|Q93GP7|SSB2_SALTY (Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ssb2 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-08
Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 89  GIYKAILVGQVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 148
           G+ K ILVG +GQ P  + + +G  V  L++ T       R   + E RE+      +WH
Sbjct: 5   GVNKVILVGHIGQDPEVRYMPNGGAVANLTLATS---ETWRVRQDGEMREH-----TEWH 64

Query: 149 RVSIYPQRLGDVVMKHVVPGSILYLEGNLETKIFTDSITGLVRRIREVAIRRSGRLVFLG 208
           RV ++  +L ++  +++  G+ +Y+EG L T+ +TD  +G  +   EV +   G +  LG
Sbjct: 65  RVVVF-GKLAEIASEYLRKGAQVYIEGQLRTRKWTDQ-SGQDKYTTEVIVNVGGTMQMLG 124

Query: 209 KGEGDVQQSTQS 221
           +     QQ  Q+
Sbjct: 125 RHNSQPQQEPQT 126

[Close]

BLAST of Carg04796 vs. TrEMBL
Match: tr|A0A0A0LTL6|A0A0A0LTL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 190/233 (81.55%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDM--DLDS 60
           MTSM  LSRRL RSLLSNSKASHH+DILPV   + NLSFRS+SDI ES I SD+  +LDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  HSVSNRPSLSPSSSQT----RTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120
           +SV+N+PSLSPSSSQ+    R +YNRPLENGLDAGIYKAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLG++VMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           GNLETKIFTD +TGLVRRIREVAIR +GRLVFLGKGEG+ Q+ST SEF+   Y
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGY 233

[Close]

BLAST of Carg04796 vs. TrEMBL
Match: tr|A0A1S3C3D2|A0A1S3C3D2_CUCME (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.2e-73
Identity = 156/233 (66.95%), Postives = 168/233 (72.10%), Query Frame = 0


Query: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSI------GSDM 60
           MTS   LSRRL RSLLSNSKASHHHDILPV   + NLSFRS+SDI ES I          
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIXXXXXXXXXX 60

Query: 61  DLDSHSVSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120
                                              I+KAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG++VMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           GNLETKIFTD +TGLVRRIREVAIR +GRLVFLGK EG+ Q+ST SE +   Y
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGY 233

[Close]

BLAST of Carg04796 vs. TrEMBL
Match: tr|A0A2N9HCL1|A0A2N9HCL1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39979 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.3e-72
Identity = 219/624 (35.10%), Postives = 257/624 (41.19%), Query Frame = 0


Query: 3   SMAVLSRRLFRSLLS--NSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHS 62
           S+A LSRRL RSLLS  N K SH    + +  +  +    + SD  E      +D D  S
Sbjct: 4   SVATLSRRLCRSLLSTHNPKPSHFLSSVSLYSTDSDHHESAASDSDELEPPPALDSDLDS 63

Query: 63  VSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSVG 122
           V  + S +P   Q R +Y+RPLENGLD GIYKAI+VGQVGQ+PLQK+LKSGRTVT+ SVG
Sbjct: 64  VPPQDSTNP-KQQERIVYDRPLENGLDVGIYKAIVVGQVGQTPLQKKLKSGRTVTMFSVG 123

Query: 123 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 182
           TGGIRNNRRPL NE+PREYANRCAVQWHRVS+YP RLG +V KHV+PGSILYLEGNLETK
Sbjct: 124 TGGIRNNRRPLDNEDPREYANRCAVQWHRVSVYPDRLGRIVNKHVLPGSILYLEGNLETK 183

Query: 183 IFTDSITGLVRRIREVAIRRS--------------------------------------- 242
           IFTD ITGLVRRIRE+AIRR+                                       
Sbjct: 184 IFTDPITGLVRRIREIAIRRNDGYPMHRQKSIGAIPILSPHYYALSGFGNLAMVLDFLMC 243

Query: 243 ------------------------------------------------------------ 302
                                                                       
Sbjct: 244 LTSMDVVCSGTFDKIRMMQRILAWLLTPGHEHKLFSPSRVIAPKITRQLVLASGISCHRQ 303

Query: 303 ---------------GRLVFLGKGEGDVQQSTQSEFKD--------------------PF 332
                          GR+VFLGKG GD QQ++QSE K                     P 
Sbjct: 304 YDFGPIISVGILLPRGRIVFLGKG-GDAQQASQSELKAWMEEENLKENACPCWPRVFLPI 363

[Close]

BLAST of Carg04796 vs. TrEMBL
Match: tr|A0A2I4G8B9|A0A2I4G8B9_9ROSI (single-stranded DNA-binding protein, mitochondrial OS=Juglans regia OX=51240 GN=LOC109005592 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.4e-69
Identity = 147/232 (63.36%), Postives = 170/232 (73.28%), Query Frame = 0


Query: 3   SMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMDLDSHSVS 62
           SM  LSRRL+RSLLSNS+ S H+           LS +S+   G   + SD         
Sbjct: 4   SMGTLSRRLWRSLLSNSRPSSHY-----------LSAKSMCTTGTGHLSSDEASSESEPD 63

Query: 63  NRPSLSPSSS-------QTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVT 122
           + P L   SS       Q R +Y+RPLENGLD GIYKAI+VGQVGQSP QK+L+SG TVT
Sbjct: 64  SVPPLPQQSSPSQESDPQQRMVYDRPLENGLDVGIYKAIVVGQVGQSPFQKKLRSGTTVT 123

Query: 123 LLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEG 182
           LLSVGTGGIRNNRRPL NE+PREYANRCAVQWHRVS+YP++LG VVMKHVVPG+ILYLEG
Sbjct: 124 LLSVGTGGIRNNRRPLDNEDPREYANRCAVQWHRVSVYPEKLGAVVMKHVVPGTILYLEG 183

Query: 183 NLETKIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           NLETKIFTD  TG VRRIRE+AIRR+GR+VF+G G GD Q+ +QSE K   Y
Sbjct: 184 NLETKIFTDPTTGFVRRIREIAIRRNGRIVFVGNG-GDAQKPSQSELKSVGY 223

[Close]

BLAST of Carg04796 vs. TrEMBL
Match: tr|A0A2R6QI78|A0A2R6QI78_ACTCH (Single-stranded DNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18642 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 144/228 (63.16%), Postives = 172/228 (75.44%), Query Frame = 0


Query: 2   TSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSI--GSDMDLDSH 61
           +S+A++SRRL RSLL+N      H +   +C+S  LS    SD+ +S++           
Sbjct: 3   SSVALISRRLCRSLLTNPNKPSSH-LSSRLCTS--LSSHENSDLDDSTVEPXXXXXXXXX 62

Query: 62  SVSNRPSLSPSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTLLSV 121
                       +Q R +Y+RPLENGLD G+YKAILVGQVGQ+PLQK+L+SGR VTLLSV
Sbjct: 63  XXXXXXXXXXXXAQQRAVYDRPLENGLDVGVYKAILVGQVGQTPLQKRLRSGRMVTLLSV 122

Query: 122 GTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLET 181
           GTGGIRNNRRPL NEEPREYANRCAVQWHRVSIYP+RLG++ MKH VPGSILYLEGNLET
Sbjct: 123 GTGGIRNNRRPLDNEEPREYANRCAVQWHRVSIYPERLGEIAMKHAVPGSILYLEGNLET 182

Query: 182 KIFTDSITGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKDPFY 228
           KIF D+ITGLVRRIRE+AIRR+GRLVFLGKG+ + QQ TQ+E K   Y
Sbjct: 183 KIFNDTITGLVRRIREIAIRRNGRLVFLGKGD-EAQQPTQAELKGVGY 226

The following BLAST results are available for this feature:

BLAST of Carg04796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923669.1	1.1e-116	97.80	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP...	[more]
XP_023000724.1	7.3e-102	87.88	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000...	[more]
XP_023519718.1	2.8e-101	87.01	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
XP_011650431.1	1.6e-96	81.55	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] ...	[more]
XP_023541983.1	1.6e-85	77.09	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. p...	[more]

BLAST of Carg04796 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18580.1	1.0e-65	60.79	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G74070.1	1.0e-25	72.97	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]
AT4G11060.1	2.2e-23	33.16	mitochondrially targeted single-stranded DNA binding protein	[more]
AT5G13120.1	5.4e-06	33.98	cyclophilin 20-2	[more]
AT4G34960.1	2.7e-05	32.91	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of Carg04796 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4HTT6\|CP26B_ARATH	1.9e-24	72.97	Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic OS=Arabidopsis thalia...	[more]
sp\|Q84J78\|SSBP_ARATH	3.9e-22	33.16	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q9RHF4\|SSB2_SALTI	1.1e-08	31.67	Single-stranded DNA-binding protein 2 OS=Salmonella typhi OX=90370 GN=ssb2 PE=3 ...	[more]
sp\|Q8D254\|SSB_WIGBR	1.1e-08	33.33	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]
sp\|Q93GP7\|SSB2_SALTY	1.4e-08	29.55	Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SG...	[more]

BLAST of Carg04796 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTL6\|A0A0A0LTL6_CUCSA	1.0e-96	81.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
tr\|A0A1S3C3D2\|A0A1S3C3D2_CUCME	6.2e-73	66.95	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A2N9HCL1\|A0A2N9HCL1_FAGSY	2.3e-72	35.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39979 PE=4 SV=1	[more]
tr\|A0A2I4G8B9\|A0A2I4G8B9_9ROSI	2.4e-69	63.36	single-stranded DNA-binding protein, mitochondrial OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A2R6QI78\|A0A2R6QI78_ACTCH	1.3e-67	63.16	Single-stranded DNA-binding protein OS=Actinidia chinensis var. chinensis OX=159...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000413	protein peptidyl-prolyl isomerization

Vocabulary: **Molecular Function**
Term	Definition
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0003697	single-stranded DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR002130	Cyclophilin-type_PPIase_dom
IPR029000	Cyclophilin-like_dom_sf
IPR000424	Primosome_PriB/ssb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04796-RA	Carg04796-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 87..213 e-value: 1.0E-23 score: 85.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..76
None	No IPR available	PANTHER	PTHR10302:SF3	SINGLE-STRAND DNA-BINDING PROTEIN	coord: 2..223
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 92..200 e-value: 1.5E-17 score: 63.4
IPR000424	Primosome PriB/single-strand DNA-binding	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 2..223
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 90..205 score: 13.235
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 94..200 e-value: 8.45742E-13 score: 62.6298
IPR029000	Cyclophilin-like domain superfamily	GENE3D	G3DSA:2.40.100.10		coord: 244..324 e-value: 1.2E-7 score: 33.4
IPR029000	Cyclophilin-like domain superfamily	SUPERFAMILY	SSF50891	Cyclophilin-like	coord: 253..322
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PROSITE	PS50072	CSA_PPIASE_2	coord: 258..333 score: 9.132
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 89..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04796	Cla018520	Watermelon (97103) v1	carwmB0387
Carg04796	MELO3C002071	Melon (DHL92) v3.5.1	carmeB0393
Carg04796	ClCG04G011320	Watermelon (Charleston Gray)	carwcgB0383
Carg04796	CmaCh13G010440	Cucurbita maxima (Rimu)	carcmaB0540
Carg04796	CmoCh18G000230	Cucurbita moschata (Rifu)	carcmoB0528
Carg04796	CmoCh13G010850	Cucurbita moschata (Rifu)	carcmoB0526
Carg04796	Cp4.1LG20g01080	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04796	MELO3C002071.2	Melon (DHL92) v3.6.1	carmedB0397
Carg04796	Cla97C04G078180	Watermelon (97103) v2	carwmbB0409

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04796	Watermelon (97103) v2	carwmbB0413
Carg04796	Watermelon (97103) v2	carwmbB0415
Carg04796	Wax gourd	carwgoB0473
Carg04796	Wax gourd	carwgoB0481
Carg04796	Wax gourd	carwgoB0482
Carg04796	Silver-seed gourd	carcarB410
Carg04796	Silver-seed gourd	carcarB412
Carg04796	Silver-seed gourd	carcarB413
Carg04796	Silver-seed gourd	carcarB416
Carg04796	Cucumber (Gy14) v2	carcgybB0393
Carg04796	Cucumber (Gy14) v2	carcgybB0394
Carg04796	Cucumber (Gy14) v1	carcgyB0448
Carg04796	Cucumber (Gy14) v1	carcgyB0455
Carg04796	Cucurbita maxima (Rimu)	carcmaB0536
Carg04796	Cucurbita maxima (Rimu)	carcmaB0538
Carg04796	Cucurbita maxima (Rimu)	carcmaB0541
Carg04796	Cucurbita moschata (Rifu)	carcmoB0522
Carg04796	Cucurbita moschata (Rifu)	carcmoB0524
Carg04796	Cucurbita moschata (Rifu)	carcmoB0527
Carg04796	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04796	Cucurbita pepo (Zucchini)	carcpeB0543
Carg04796	Cucurbita pepo (Zucchini)	carcpeB0548
Carg04796	Wild cucumber (PI 183967)	carcpiB0418
Carg04796	Wild cucumber (PI 183967)	carcpiB0419
Carg04796	Cucumber (Chinese Long) v2	carcuB0415
Carg04796	Cucumber (Chinese Long) v2	carcuB0416
Carg04796	Cucumber (Chinese Long) v3	carcucB0418
Carg04796	Cucumber (Chinese Long) v3	carcucB0419
Carg04796	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04796	Bottle gourd (USVL1VR-Ls)	carlsiB359
Carg04796	Melon (DHL92) v3.5.1	carmeB0396
Carg04796	Melon (DHL92) v3.6.1	carmedB0400
Carg04796	Watermelon (Charleston Gray)	carwcgB0388
Carg04796	Watermelon (97103) v1	carwmB0391