Carg04485 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04485
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	Cucurbita_argyrosperma_scaffold_032 : 648298 .. 650811 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCAGTTCCATCACCTCCATCTCCATTCCAATCCCCTCTCAGTTTCAACCACAAGAAATCTGCTCCTCCTCCTCTTCTAATCTCCCAATCTTTCACTCTCACTCGAACTCCCAGAACCACGCTCTGTTTCCCTCTTCGCGTCTCATCTTCGTCTTCTTCTTCAAATAATCCGGTTGACACCCTTCAATCCGCTTCTGATGTCGTCAGGGGATTCTACGATGGCGTCAACCGCCACGACCTCGCCTCCGTCGAGGATCTCATCGCTGAGAATTGCGTTTACGAGGACCTTATCTTTTCTCGCCCTTTCGTCGGCCGCAAGGTACGTACCCGTCGGCCTTCTCAATCTCTTATGCCATTGTATCGTTTGGGATTTTTGCGATTCTCTGTCCAATTACTGCAGGACATTCTGATTTTCTTCAAAAAGTTCAACGATTCCATCAGTAAGGATCTCCAGTTTGTTATTGACGATATATCCACCCAAGATTCATCAGCTGTGGGTGTTCTTTGGCATTTAGGTATTCCTTTTTCTTGGCTTTTCGGATACAGTTCAAATCAGAAAATCATTATGAAAAATGTTGGAATTGATTACAGAATGGAAAGGGAAAGAGTTTCCTTTCAGCAAGGGATGCAGCTTTTATCGCTTGGTTGTTGGTGATGCCAAGAAGAGACAAATAATGTAAGTTGCATAAGATAGTGTTGAGTATACAAAGATGAAGCTTCAAATTGGTCTCTACTGGTACTAACTTCATCCATTTTTACTGCGCCGTTGTCTCAATTAACAGCTATGCACGAGACAGCGTTGAGCCTGCGTTGAAGCCTGGGGAGATGGCTTTGGTATGTTAATGTTGCTTGCTTTCTTTCTTTCTTGTTCATAAATATTGGTCAGCTGTGCCTCCTGTGTTTATCTTATCTATCTTATCGTAGTTGTTAAATTAGATTCTGACGAGGGAAACACATCTTACATCTTACCTTCTCATTTACTTATAAAAGTATGGAAACCTTTTTGTAGTAGACGAGTTTTAAAAACTTTGAGAGGAAGCTCGAAAGAGTAATCTAAAAACTTGAGCTTGGACTGTTACAAGTAAGCCCGAGCTCGGTTGAAGGAGGCTTTGATATGGAGTGTTTTGACTTTATGAAGTGGTTTAAGGGTGTTTGTAGTTTACTAGCATCATAGCTTCCATGGAATCACCTTCTAAGAGCTTAAAAACATTTAAAAAAATATTTTTTTAAGCCTTTAGAAAGTTGTTCTAGTTCGAATGCTCTACCCATCTTAGTTTGCAATTGCTATCTCACTCAACTTATCCTTGATTCTCTTTGCATCACATGGATCTGGATGATAATTCACAGTGTAAATACCCATTTAGAAGCTACCTTCTGAGTTCTTGTGCTTCTAGTAATTTGGTTCATTTTCTTACCATACAGACAATCATTAGAGGTGTGACTTGGCTTCTGGAACGATTCCCCCAGCTAGCAGATCGTATATAATTCTACTCTCTTTGAAGGAACAATTCATTACTGTATTACGAATTTACAATCAATATTCTTCAGTACATAGTTCTATTAAGCAAGGTCGAATTGTATAAATCCTTACATTATCTATAAAGATTAATAAGGATTTCACTTTCCCTCAAACATCTATCTATGCATTAAATTAGAATCAGTCAACCTTCAATGCCAACCTTCACAGATTCTAATTTTATTATTAGAAAAAGGAGGCAACTTTGAAGGCATAATGGTTCATGGTCGGCAGGCCAACTCCAGAAATTGGTCTGATCTGATCCATTTGTCTTTAAAATTTTCATTTTGTTTACATAAAATATATACAAAAAGAAGTTGAGATGTCAACTATCAAGGGCTTGGTCGACGCGCTATTTAGAGTGGGTCGCAATCAAAGTCCTTGCCTCCCAAGCATCTTTCCTTCACCAAAATTTATATAACTCCAAACCATTCCTCTTCTTTCCTTCAAACCTTTCTTTCCTCAGCTCAATTTTAGCAGTCCAAAATGAAGAGGGAAGGTCGCCAACATGGCATGGTAAGAACCTACCGGATCATCCCATCCCCATGGAACCCAAGACCCAAAACTCGGTTCGTTAACGAACTCGATTTCCCTCCTACTGCTGGCCTTTTCACAAAGGTTTCATCCAAGCCTACCAATCACTCCAAGTTCACTGGAAAATGTGGCAAGCCCCGATGCTCTGGCTGCAGGCTACACCCAGTTCAAAAGGCCAAGGATAAAGCTAAGGGATCTAATAAGTTCAAGGCACACCATCTCCTCGATGACTGCTCGCTGATGGTTACCTTTGATGAATGCCCCAGCTTCATCGACGACGATGATGATGATGATGATCAGACGCAGAAAGTAACAGATTTCGAATCAAGGGTCGAAGATATTCGTCGTCATGTGGATGATGACGATGAAATGAGTTACTGTGAAGTTGAGTTGGTCGTGGACGAAGCCATGGAGGGAGGTGATATTTGGTGTTTGGTAGAAGAAAGACCAGCAATCTAA

mRNA sequence

ATGAGCTCAGTTCCATCACCTCCATCTCCATTCCAATCCCCTCTCAGTTTCAACCACAAGAAATCTGCTCCTCCTCCTCTTCTAATCTCCCAATCTTTCACTCTCACTCGAACTCCCAGAACCACGCTCTGTTTCCCTCTTCGCGTCTCATCTTCGTCTTCTTCTTCAAATAATCCGGTTGACACCCTTCAATCCGCTTCTGATGTCGTCAGGGGATTCTACGATGGCGTCAACCGCCACGACCTCGCCTCCGTCGAGGATCTCATCGCTGAGAATTGCGTTTACGAGGACCTTATCTTTTCTCGCCCTTTCGTCGGCCGCAAGGACATTCTGATTTTCTTCAAAAAGTTCAACGATTCCATCAGTAAGGATCTCCAGTTTGTTATTGACGATATATCCACCCAAGATTCATCAGCTGTGGGTGTTCTTTGGCATTTAGAATGGAAAGGGAAAGAGTTTCCTTTCAGCAAGGGATGCAGCTTTTATCGCTTGGTTGTTGGTGATGCCAAGAAGAGACAAATAATCTATGCACGAGACAGCGTTGAGCCTGCGTTGAAGCCTGGGGAGATGGCTTTGTCCAAAATGAAGAGGGAAGGTCGCCAACATGGCATGGTAAGAACCTACCGGATCATCCCATCCCCATGGAACCCAAGACCCAAAACTCGGTTCGTTAACGAACTCGATTTCCCTCCTACTGCTGGCCTTTTCACAAAGGTTTCATCCAAGCCTACCAATCACTCCAAGTTCACTGGAAAATGTGGCAAGCCCCGATGCTCTGGCTGCAGGCTACACCCAGTTCAAAAGGCCAAGGATAAAGCTAAGGGATCTAATAAGTTCAAGGCACACCATCTCCTCGATGACTGCTCGCTGATGGTTACCTTTGATGAATGCCCCAGCTTCATCGACGACGATGATGATGATGATGATCAGACGCAGAAAGTAACAGATTTCGAATCAAGGGTCGAAGATATTCGTCGTCATGTGGATGATGACGATGAAATGAGTTACTGTGAAGTTGAGTTGGTCGTGGACGAAGCCATGGAGGGAGGTGATATTTGGTGTTTGGTAGAAGAAAGACCAGCAATCTAA

Coding sequence (CDS)

ATGAGCTCAGTTCCATCACCTCCATCTCCATTCCAATCCCCTCTCAGTTTCAACCACAAGAAATCTGCTCCTCCTCCTCTTCTAATCTCCCAATCTTTCACTCTCACTCGAACTCCCAGAACCACGCTCTGTTTCCCTCTTCGCGTCTCATCTTCGTCTTCTTCTTCAAATAATCCGGTTGACACCCTTCAATCCGCTTCTGATGTCGTCAGGGGATTCTACGATGGCGTCAACCGCCACGACCTCGCCTCCGTCGAGGATCTCATCGCTGAGAATTGCGTTTACGAGGACCTTATCTTTTCTCGCCCTTTCGTCGGCCGCAAGGACATTCTGATTTTCTTCAAAAAGTTCAACGATTCCATCAGTAAGGATCTCCAGTTTGTTATTGACGATATATCCACCCAAGATTCATCAGCTGTGGGTGTTCTTTGGCATTTAGAATGGAAAGGGAAAGAGTTTCCTTTCAGCAAGGGATGCAGCTTTTATCGCTTGGTTGTTGGTGATGCCAAGAAGAGACAAATAATCTATGCACGAGACAGCGTTGAGCCTGCGTTGAAGCCTGGGGAGATGGCTTTGTCCAAAATGAAGAGGGAAGGTCGCCAACATGGCATGGTAAGAACCTACCGGATCATCCCATCCCCATGGAACCCAAGACCCAAAACTCGGTTCGTTAACGAACTCGATTTCCCTCCTACTGCTGGCCTTTTCACAAAGGTTTCATCCAAGCCTACCAATCACTCCAAGTTCACTGGAAAATGTGGCAAGCCCCGATGCTCTGGCTGCAGGCTACACCCAGTTCAAAAGGCCAAGGATAAAGCTAAGGGATCTAATAAGTTCAAGGCACACCATCTCCTCGATGACTGCTCGCTGATGGTTACCTTTGATGAATGCCCCAGCTTCATCGACGACGATGATGATGATGATGATCAGACGCAGAAAGTAACAGATTTCGAATCAAGGGTCGAAGATATTCGTCGTCATGTGGATGATGACGATGAAATGAGTTACTGTGAAGTTGAGTTGGTCGTGGACGAAGCCATGGAGGGAGGTGATATTTGGTGTTTGGTAGAAGAAAGACCAGCAATCTAA

Protein sequence

MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPVDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMALSKMKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCGKPRCSGCRLHPVQKAKDKAKGSNKFKAHHLLDDCSLMVTFDECPSFIDDDDDDDDQTQKVTDFESRVEDIRRHVDDDDEMSYCEVELVVDEAMEGGDIWCLVEERPAI

Homology

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BLAST of Carg04485 vs. NCBI nr
Match: XP_022991155.1 (uncharacterized protein LOC111487838 isoform X2 [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 8.0e-102
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 60
           M SVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV
Sbjct: 22  MGSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 81

Query: 61  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS 120
           DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS
Sbjct: 82  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS 141

Query: 121 ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS 180
           ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS
Sbjct: 142 ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS 201

Query: 181 VEPALKPGEMALS 194
           VEPALKPGEMAL+
Sbjct: 202 VEPALKPGEMALT 214

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BLAST of Carg04485 vs. NCBI nr
Match: XP_022955016.1 (uncharacterized protein LOC111457092 isoform X2 [Cucurbita moschata])

HSP 1 Score: 379.4 bits (973), Expect = 1.4e-101
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 60
           MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSS SSSSNNPV
Sbjct: 22  MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSLSSSSNNPV 81

Query: 61  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS 120
           DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS
Sbjct: 82  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDS 141

Query: 121 ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS 180
           ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS
Sbjct: 142 ISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDS 201

Query: 181 VEPALKPGEMALS 194
           VEPALKPGEMAL+
Sbjct: 202 VEPALKPGEMALT 214

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BLAST of Carg04485 vs. NCBI nr
Match: XP_022991154.1 (uncharacterized protein LOC111487838 isoform X1 [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 2.0e-97
Identity = 191/220 (86.82%), Postives = 192/220 (87.27%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 60
           M SVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV
Sbjct: 22  MGSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 81

Query: 61  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRK------------ 120
           DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRK            
Sbjct: 82  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKVRTRRPSQSLLP 141

Query: 121 ---------------DILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF 180
                          DILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF
Sbjct: 142 SYRLGFLRFSVQMLQDILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF 201

Query: 181 PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMALS 194
           PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMAL+
Sbjct: 202 PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMALT 241

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BLAST of Carg04485 vs. NCBI nr
Match: XP_022955008.1 (uncharacterized protein LOC111457092 isoform X1 [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 3.5e-97
Identity = 191/220 (86.82%), Postives = 192/220 (87.27%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNPV 60
           MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSS SSSSNNPV
Sbjct: 22  MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSLSSSSNNPV 81

Query: 61  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRK------------ 120
           DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRK            
Sbjct: 82  DTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKVRTRRPSQSLMP 141

Query: 121 ---------------DILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF 180
                          DILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF
Sbjct: 142 LYRLGFLRFSVQLLQDILIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEF 201

Query: 181 PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMALS 194
           PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMAL+
Sbjct: 202 PFSKGCSFYRLVVGDAKKRQIIYARDSVEPALKPGEMALT 241

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BLAST of Carg04485 vs. NCBI nr
Match: XP_023518153.1 (uncharacterized protein LOC111781680 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.7 bits (857), Expect = 3.8e-88
Identity = 173/194 (89.18%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKK-SAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSSSNNP 60
           MSSV SPPSPFQSPLSFNHKK         SQSFTLTRTPRTTLCFPLR          P
Sbjct: 22  MSSVTSPPSPFQSPLSFNHKKXXXXXXXXXSQSFTLTRTPRTTLCFPLRAXXXXXXXXXP 81

Query: 61  VDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFND 120
           VDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFND
Sbjct: 82  VDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFND 141

Query: 121 SISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARD 180
           SISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARD
Sbjct: 142 SISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARD 201

Query: 181 SVEPALKPGEMALS 194
           SVEPALKPGEMAL+
Sbjct: 202 SVEPALKPGEMALT 215

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BLAST of Carg04485 vs. TAIR10
Match: AT1G71480.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-50
Identity = 113/201 (56.22%), Postives = 136/201 (67.66%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSP--LSFNHKKSA---PPPLLISQSFTLTRTPRTTLCFPLRVSSSSSS 60
           MS   S  S   SP  +S NH   +   P  L+   S T ++ PR +  +     +++++
Sbjct: 1   MSFTASLVSYLTSPSLVSLNHLPPSFFLPTKLVKPTSLTHSQPPRLSASYGPAAKAATAN 60

Query: 61  SNNPVDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFK 120
              P     SAS+VV  FY  VN HDL+SV DLIA++CVYEDL+FS PFVGRK IL FF 
Sbjct: 61  DVVPETAPTSASEVVSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFG 120

Query: 121 KFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQII 180
           KF +S S DLQFVIDDIST+DSSAVGV WHLEWKGK FPFSKGCSFYRL V D  KRQI+
Sbjct: 121 KFIESTSTDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDG-KRQIV 180

Query: 181 YARDSVEPALKPGEMALSKMK 197
           Y RD VEPA+KPGE  L+ +K
Sbjct: 181 YGRDCVEPAIKPGETVLAAIK 200

[Close]

BLAST of Carg04485 vs. TAIR10
Match: AT5G40690.1 (EF-Hand 1, calcium-binding site (InterPro:IPR018247))

HSP 1 Score: 99.0 bits (245), Expect = 6.4e-21
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 195 MKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCG 254
           MKREG+QHGMVRTYRI+P   NPRP+++ VN L                 NHSKFTGKCG
Sbjct: 1   MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLXXXXXXXXXXXXXXXXXNHSKFTGKCG 60

Query: 255 KPRCSGCRLHPVQKAKDKAKGSNKFKAH 283
           + RC  C +HPV K+K K KGS+K + +
Sbjct: 61  QARCLDCHMHPVTKSKAKTKGSSKVRTN 88

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BLAST of Carg04485 vs. TAIR10
Match: AT5G41470.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-20
Identity = 43/132 (32.58%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 65  SASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDILIFFKKFNDSISKD 124
           S  D V  FY  +N  +   +   I+ +C  +D  F +PF G+++ + FF++   S+ ++
Sbjct: 74  SGYDAVMKFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEAMEFFEELVKSMGQN 133

Query: 125 LQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAKKRQIIYARDSVEPA 184
           ++F ++++   D  +  V WHLEWKG++ PF++GCSFY   + +  +  I  AR  +E  
Sbjct: 134 VKFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEF-IDEGGRLVIRNARILIESP 193

Query: 185 LKPGEMALSKMK 197
           +KPG + LS +K
Sbjct: 194 IKPGGITLSLLK 204

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BLAST of Carg04485 vs. TAIR10
Match: AT2G41730.1 (unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 195 MKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCG 254
           MK EGR  G+VRT  I P  +NPRP +   N LD PP  G FTKV SK TNHS  TG+  
Sbjct: 1   MKSEGRHQGIVRTGMIHPRGFNPRPTS---NRLDSPPAFGDFTKVPSKTTNHSNTTGESE 60

Query: 255 KPRCSGCRLHPVQKAKDKAKGSNKFK 281
           + + S C + P  K+  K+KG  K +
Sbjct: 61  RSKYSHCHVSPAIKSGHKSKGRRKLQ 83

[Close]

BLAST of Carg04485 vs. TAIR10
Match: AT5G24640.1 (unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-11
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 195 MKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCG 254
           MK EGR  G+VRT  I P  +NP    R  N LD PP  G FTK+  K TNHS   G+  
Sbjct: 1   MKSEGRHQGVVRTGMIHPRGFNP----RHTNRLDSPPVFGDFTKMQPKTTNHSNIIGESE 60

Query: 255 KPRCSGCRLHPVQKAKDKAKGSNKFK 281
           + + S C + P  K+  K+KG  K +
Sbjct: 61  RSKYSNCHVSPAIKSGHKSKGRRKLQ 82

[Close]

BLAST of Carg04485 vs. TrEMBL
Match: tr|A0A1S3C8U3|A0A1S3C8U3_CUCME (uncharacterized protein LOC103498136 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498136 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.5e-69
Identity = 151/206 (73.30%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSS----- 60
           M+S+ S  SP  S   FNHKKS PPP  IS SFT    PR T   PLRVSSSSS      
Sbjct: 1   MNSILSSSSP--SLPIFNHKKS-PPPFPISHSFTSPSIPRPTHYSPLRVSSSSSDNPAVT 60

Query: 61  -----SNNPVDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDI 120
                ++ P+DTL+SAS VVR FYDGVNRHDLASVE LIAENCVYEDL+FSRPFVGRKDI
Sbjct: 61  VPSPPTDAPLDTLRSASHVVREFYDGVNRHDLASVEPLIAENCVYEDLVFSRPFVGRKDI 120

Query: 121 LIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAK 180
           L+FFKKFNDSISKDLQFVIDDIST+DSSA+GVLWHLEWKGKEFPFSKGCSFYRL   D K
Sbjct: 121 LLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLADVDGK 180

Query: 181 KRQIIYARDSVEPALKPGEMALSKMK 197
           K QIIYARDSVEPA KPGEMAL+ ++
Sbjct: 181 K-QIIYARDSVEPAFKPGEMALTAIR 202

[Close]

BLAST of Carg04485 vs. TrEMBL
Match: tr|A0A1S3C9E5|A0A1S3C9E5_CUCME (uncharacterized protein LOC103498136 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498136 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.0e-68
Identity = 151/202 (74.75%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSS----- 60
           M+S+ S  SP  S   FNHKKS PPP  IS SFT    PR T   PLRVSSSSS      
Sbjct: 1   MNSILSSSSP--SLPIFNHKKS-PPPFPISHSFTSPSIPRPTHYSPLRVSSSSSDNPAVT 60

Query: 61  -----SNNPVDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDI 120
                ++ P+DTL+SAS VVR FYDGVNRHDLASVE LIAENCVYEDL+FSRPFVGRKDI
Sbjct: 61  VPSPPTDAPLDTLRSASHVVREFYDGVNRHDLASVEPLIAENCVYEDLVFSRPFVGRKDI 120

Query: 121 LIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAK 180
           L+FFKKFNDSISKDLQFVIDDIST+DSSA+GVLWHLEWKGKEFPFSKGCSFYRL   D K
Sbjct: 121 LLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLADVDGK 180

Query: 181 KRQIIYARDSVEPALKPGEMAL 193
           K QIIYARDSVEPA KPGEMAL
Sbjct: 181 K-QIIYARDSVEPAFKPGEMAL 198

[Close]

BLAST of Carg04485 vs. TrEMBL
Match: tr|A0A0A0KQZ4|A0A0A0KQZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517760 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 149/206 (72.33%), Postives = 163/206 (79.13%), Query Frame = 0


Query: 1   MSSVPSPPSPFQSPLSFNHKKSAPPPLLISQSFTLTRTPRTTLCFPLRVSSSSSS----- 60
           M+S+ S  SP  S   FNHKKS P P  IS SFT    P+     PLRVSSSSS      
Sbjct: 1   MNSILSSSSP--SLPIFNHKKS-PSPFPISHSFTSPSIPKPAPYSPLRVSSSSSDNPAVT 60

Query: 61  -----SNNPVDTLQSASDVVRGFYDGVNRHDLASVEDLIAENCVYEDLIFSRPFVGRKDI 120
                ++ P+DTL+SAS+VVR FYDGVNRHDLASVE LIAENCVYEDLIFSRPFVGRKDI
Sbjct: 61  VPXPPTDAPLDTLRSASNVVRDFYDGVNRHDLASVEPLIAENCVYEDLIFSRPFVGRKDI 120

Query: 121 LIFFKKFNDSISKDLQFVIDDISTQDSSAVGVLWHLEWKGKEFPFSKGCSFYRLVVGDAK 180
           L+FFKKFNDSISKDLQFVIDDIST+DSSA+GVLWHLEWKGKEFPFSKGCSFYRL   D K
Sbjct: 121 LLFFKKFNDSISKDLQFVIDDISTEDSSALGVLWHLEWKGKEFPFSKGCSFYRLADVDGK 180

Query: 181 KRQIIYARDSVEPALKPGEMALSKMK 197
           K QIIYARDSVEPA KPGEMAL+ ++
Sbjct: 181 K-QIIYARDSVEPAFKPGEMALTAIR 202

[Close]

BLAST of Carg04485 vs. TrEMBL
Match: tr|A0A0A0KNY0|A0A0A0KNY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517750 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 130/190 (68.42%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 195 MKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCG 254
           MKREGRQHGMVRTYRIIPSPWNPRP+TRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKC 
Sbjct: 1   MKREGRQHGMVRTYRIIPSPWNPRPETRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCS 60

Query: 255 KPRCSGCRLHPVQKAKDKAKGSNKFKAHHLLDDCSLMVTFDECPSFID------------ 314
           KPRCSGCRLHPVQKAKDK KGS+KFK H LL D S M  +DECPS ID            
Sbjct: 61  KPRCSGCRLHPVQKAKDKTKGSHKFKLHQLLIDLS-MDDYDECPSIIDDDGDDQSLEEID 120

Query: 315 ---------XXXXXXXXXXKVTDFESRV-EDIRRHVDDDDEMSYCEVELVVDEAMEGGDI 363
                              KVTDFESR+ E    HV+D+DE SY  VE V+DEA+EG D 
Sbjct: 121 VKLRVGDIHRHVDGDYQLQKVTDFESRIDEGNHHHVNDEDERSYYRVEFVMDEAVEGDDS 180

[Close]

BLAST of Carg04485 vs. TrEMBL
Match: tr|A0A1S3CA33|A0A1S3CA33_CUCME (uncharacterized protein LOC103498137 OS=Cucumis melo OX=3656 GN=LOC103498137 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.3e-56
Identity = 124/191 (64.92%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 195 MKREGRQHGMVRTYRIIPSPWNPRPKTRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCG 254
           MKREGRQHGMVRTYRIIPSPWNPRP+TRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKC 
Sbjct: 1   MKREGRQHGMVRTYRIIPSPWNPRPETRFVNELDFPPTAGLFTKVSSKPTNHSKFTGKCS 60

Query: 255 KPRCSGCRLHPVQKAKDKAKGSNKFKAHHLLDDCSLMVTFDECPSFIDXXXXXXXXXXKV 314
           KPRCSGCRLHPVQKAKDK KGS KFK H LL D S M  F+ECPS ID          + 
Sbjct: 61  KPRCSGCRLHPVQKAKDKTKGSRKFKFHQLLIDFS-MDDFNECPSIID--DDSDDQSLEE 120

Query: 315 TDFESRVEDIRRH-----------------------VDDDDEMSYCEVELVVDEAMEGGD 363
            D + RV DI RH                            E SY +VE VVDEA+EG D
Sbjct: 121 IDVKLRVGDIHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSYHKVEFVVDEAVEGDD 180

The following BLAST results are available for this feature:

BLAST of Carg04485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991155.1	8.0e-102	98.96	uncharacterized protein LOC111487838 isoform X2 [Cucurbita maxima]	[more]
XP_022955016.1	1.4e-101	98.96	uncharacterized protein LOC111457092 isoform X2 [Cucurbita moschata]	[more]
XP_022991154.1	2.0e-97	86.82	uncharacterized protein LOC111487838 isoform X1 [Cucurbita maxima]	[more]
XP_022955008.1	3.5e-97	86.82	uncharacterized protein LOC111457092 isoform X1 [Cucurbita moschata]	[more]
XP_023518153.1	3.8e-88	89.18	uncharacterized protein LOC111781680 isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04485 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71480.1	3.9e-50	56.22	Nuclear transport factor 2 (NTF2) family protein	[more]
AT5G40690.1	6.4e-21	52.27	EF-Hand 1, calcium-binding site (InterPro:IPR018247)	[more]
AT5G41470.1	1.1e-20	32.58	Nuclear transport factor 2 (NTF2) family protein	[more]
AT2G41730.1	1.7e-13	47.67	unknown protein	[more]
AT5G24640.1	1.6e-11	43.02	unknown protein	[more]

BLAST of Carg04485 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04485 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8U3\|A0A1S3C8U3_CUCME	4.5e-69	73.30	uncharacterized protein LOC103498136 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C9E5\|A0A1S3C9E5_CUCME	1.0e-68	74.75	uncharacterized protein LOC103498136 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KQZ4\|A0A0A0KQZ4_CUCSA	1.1e-67	72.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517760 PE=4 SV=1	[more]
tr\|A0A0A0KNY0\|A0A0A0KNY0_CUCSA	1.4e-62	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517750 PE=4 SV=1	[more]
tr\|A0A1S3CA33\|A0A1S3CA33_CUCME	3.3e-56	64.92	uncharacterized protein LOC103498137 OS=Cucumis melo OX=3656 GN=LOC103498137 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032710	NTF2-like_dom_sf
IPR037401	SnoaL-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04485-RA	Carg04485-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037401	SnoaL-like domain	PFAM	PF12680	SnoaL_2	coord: 70..165 e-value: 1.4E-12 score: 48.0
None	No IPR available	GENE3D	G3DSA:3.10.450.50		coord: 47..181 e-value: 1.8E-21 score: 78.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33698:SF3	SUBFAMILY NOT NAMED	coord: 51..196
None	No IPR available	PANTHER	PTHR33698	FAMILY NOT NAMED	coord: 51..196
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	SSF54427	NTF2-like	coord: 58..179

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04485	Cla004648	Watermelon (97103) v1	carwmB0679
Carg04485	Csa5G517750	Cucumber (Chinese Long) v2	carcuB0707
Carg04485	MELO3C021613	Melon (DHL92) v3.5.1	carmeB0682
Carg04485	ClCG09G019570	Watermelon (Charleston Gray)	carwcgB0657
Carg04485	CSPI05G17890	Wild cucumber (PI 183967)	carcpiB0721
Carg04485	Cucsa.010960	Cucumber (Gy14) v1	carcgyB0766
Carg04485	CmaCh04G026590	Cucurbita maxima (Rimu)	carcmaB0967
Carg04485	CmoCh04G027850	Cucurbita moschata (Rifu)	carcmoB0940
Carg04485	Lsi02G016200	Bottle gourd (USVL1VR-Ls)	carlsiB623
Carg04485	CsGy5G017570	Cucumber (Gy14) v2	carcgybB0685
Carg04485	MELO3C021613.2	Melon (DHL92) v3.6.1	carmedB0694
Carg04485	CsaV3_5G026800	Cucumber (Chinese Long) v3	carcucB0724
Carg04485	Cla97C09G181020	Watermelon (97103) v2	carwmbB0714
Carg04485	Bhi06G000514	Wax gourd	carwgoB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04485	Silver-seed gourd	carcarB306
Carg04485	Cucurbita maxima (Rimu)	carcmaB0961
Carg04485	Cucurbita moschata (Rifu)	carcmoB0936
Carg04485	Cucurbita pepo (Zucchini)	carcpeB0962
Carg04485	Cucurbita pepo (Zucchini)	carcpeB0965