Carg04292 (gene) Silver-seed gourd

Overview
NameCarg04292
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCharged multivesicular body protein
LocationCucurbita_argyrosperma_scaffold_044 : 1240147 .. 1240758 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

mRNA sequence

ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Coding sequence (CDS)

ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Protein sequence

MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPTRETEKIDEDDLTRRLAELKARG
Homology
[Close]
BLAST of Carg04292 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.6 bits (963), Expect = 1.1e-100
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDLTRRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 7.9e-99
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. NCBI nr
Match: XP_004146833.1 (PREDICTED: charged multivesicular body protein 1-like [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KGN59841.1 hypothetical protein Csa_3G849970 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 3.0e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. NCBI nr
Match: XP_004141672.1 (PREDICTED: charged multivesicular body protein 1 [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-related protein CHMP1B [Cucumis melo] >KGN45545.1 hypothetical protein Csa_7G452000 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 5.6e-97
Identity = 194/203 (95.57%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFT+KSLQRQARKCEKEEKSEKLKIKKAMEKGN+DGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKM+TINK+M SIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+ETEK+DEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. NCBI nr
Match: PON35753.1 (Snf7 family [Parasponia andersonii])

HSP 1 Score: 362.8 bits (930), Expect = 7.4e-97
Identity = 194/203 (95.57%), Postives = 202/203 (99.51%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGN+DGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNIDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKM+TINK+MGSIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMGSIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+ETEK+DEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TAIR10
Match: AT1G17730.1 (vacuolar protein sorting 46.1)

HSP 1 Score: 341.7 bits (875), Expect = 3.2e-94
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI K+M +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK++EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TAIR10
Match: AT1G73030.1 (SNF7 family protein)

HSP 1 Score: 327.0 bits (837), Expect = 8.1e-90
Identity = 173/203 (85.22%), Postives = 188/203 (92.61%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI           ES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTIXXXXXXXXXXXESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK+DEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. Swiss-Prot
Match: sp|Q8LE58|CHM1A_ARATH (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 5.8e-93
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI K+M +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK++EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. Swiss-Prot
Match: sp|Q9SSM4|CHM1B_ARATH (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-88
Identity = 173/203 (85.22%), Postives = 188/203 (92.61%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI           ES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTIXXXXXXXXXXXESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK+DEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. Swiss-Prot
Match: sp|Q84VG1|CHMP1_ORYSJ (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.8e-85
Identity = 172/205 (83.90%), Postives = 186/205 (90.73%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+ QI +LKFT+KSLQRQARKCEKEEK +KLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTE MNYLRLASRLDAVVARLDTQAKM  I K+M +IVKSL+S LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TRETEK-IDEDDLTRRLAELKARG 204
             +E EK +DEDDL+RRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]
BLAST of Carg04292 vs. Swiss-Prot
Match: sp|O96552|CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.2e-39
Identity = 85/194 (43.81%), Postives = 141/194 (72.68%), Query Frame = 0 

Query: 9   NQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFT+K L++Q+           +K+KKA+E+GNMDGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSXXXXXXXXXXXIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNM 128
           LRLASR+DAV +R++T  +M ++  +M +IVKS+E ++   +L+K+++ MDQFE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPTRETEKID 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+ + ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLTRRLAELKAR 203
            D+LT RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]
BLAST of Carg04292 vs. Swiss-Prot
Match: sp|Q9HD42|CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens OX=9606 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-37
Identity = 85/191 (44.50%), Postives = 136/191 (71.20%), Query Frame = 0 

Query: 11  IMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLR 70
           + +LKFTAK L++ A+K EK+ K+E+ K+KKA+ + N++ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 71  LASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K M  + K+L+  L+T +LQK+S  MD+FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124

Query: 131 QAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAGHAVPTRETEKIDE 190
               ME++M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P G +     + +  E
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184

Query: 191 DDLTRRLAELK 201
           D L+RRLA L+
Sbjct: 185 DQLSRRLAALR 195

[Close]
BLAST of Carg04292 vs. TrEMBL
Match: tr|A0A1S3BIE8|A0A1S3BIE8_CUCME (ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TrEMBL
Match: tr|A0A0A0LIG8|A0A0A0LIG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TrEMBL
Match: tr|A0A1S3CHC1|A0A1S3CHC1_CUCME (ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.7e-97
Identity = 194/203 (95.57%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFT+KSLQRQARKCEKEEKSEKLKIKKAMEKGN+DGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKM+TINK+M SIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+ETEK+DEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TrEMBL
Match: tr|A0A0A0K779|A0A0A0K779_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.7e-97
Identity = 194/203 (95.57%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFT+KSLQRQARKCEKEEKSEKLKIKKAMEKGN+DGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKM+TINK+M SIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+ETEK+DEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]
BLAST of Carg04292 vs. TrEMBL
Match: tr|A0A2P5FE74|A0A2P5FE74_9ROSA (Snf7 family OS=Trema orientalis OX=63057 GN=TorRG33x02_080330 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.9e-97
Identity = 194/203 (95.57%), Postives = 202/203 (99.51%), Query Frame = 0 

Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGN+DGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNIDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKM+TINK+MGSIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMATINKSMGSIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+ETEK+DEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

The following BLAST results are available for this feature:
BLAST of Carg04292 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949550.11.1e-100100.00ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel... [more]
XP_022148096.17.9e-9998.03ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia][more]
XP_004146833.13.0e-9897.54PREDICTED: charged multivesicular body protein 1-like [Cucumis sativus] >XP_0084... [more]
XP_004141672.15.6e-9795.57PREDICTED: charged multivesicular body protein 1 [Cucumis sativus] >XP_008462374... [more]
PON35753.17.4e-9795.57Snf7 family [Parasponia andersonii][more]
BLAST of Carg04292 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17730.13.2e-9488.18vacuolar protein sorting 46.1[more]
AT1G73030.18.1e-9085.22SNF7 family protein[more]
BLAST of Carg04292 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LE58|CHM1A_ARATH5.8e-9388.18ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1[more]
sp|Q9SSM4|CHM1B_ARATH1.5e-8885.22ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1[more]
sp|Q84VG1|CHMP1_ORYSJ5.8e-8583.90ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE... [more]
sp|O96552|CHMP1_DICDI6.2e-3943.81Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch... [more]
sp|Q9HD42|CHM1A_HUMAN3.4e-3744.50Charged multivesicular body protein 1a OS=Homo sapiens OX=9606 GN=CHMP1A PE=1 SV... [more]
BLAST of Carg04292 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BIE8|A0A1S3BIE8_CUCME2.0e-9897.54ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=3 S... [more]
tr|A0A0A0LIG8|A0A0A0LIG8_CUCSA2.0e-9897.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=3 SV=1[more]
tr|A0A1S3CHC1|A0A1S3CHC1_CUCME3.7e-9795.57ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=3 SV=1[more]
tr|A0A0A0K779|A0A0A0K779_CUCSA3.7e-9795.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=3 SV=1[more]
tr|A0A2P5FE74|A0A2P5FE74_9ROSA4.9e-9795.57Snf7 family OS=Trema orientalis OX=63057 GN=TorRG33x02_080330 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04292-RACarg04292-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..45
NoneNo IPR availableCOILSCoilCoilcoord: 111..138
NoneNo IPR availableCOILSCoilCoilcoord: 182..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..191
NoneNo IPR availablePANTHERPTHR10476:SF2CHARGED MULTIVESICULAR BODY PROTEIN 1Bcoord: 9..201
NoneNo IPR availablePANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 9..201
IPR005024Snf7 familyPFAMPF03357Snf7coord: 11..172
e-value: 3.1E-12
score: 46.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04292Cla015603Watermelon (97103) v1carwmB0186
Carg04292Cla012628Watermelon (97103) v1carwmB0192
Carg04292Csa7G452000Cucumber (Chinese Long) v2carcuB0230
Carg04292Csa3G849970Cucumber (Chinese Long) v2carcuB0222
Carg04292MELO3C024407Melon (DHL92) v3.5.1carmeB0202
Carg04292ClCG07G013580Watermelon (Charleston Gray)carwcgB0199
Carg04292ClCG09G000500Watermelon (Charleston Gray)carwcgB0189
Carg04292CSPI03G41620Wild cucumber (PI 183967)carcpiB0229
Carg04292CSPI07G23030Wild cucumber (PI 183967)carcpiB0237
Carg04292Cucsa.341360Cucumber (Gy14) v1carcgyB0246
Carg04292Cucsa.360730Cucumber (Gy14) v1carcgyB0248
Carg04292CmaCh08G007550Cucurbita maxima (Rimu)carcmaB0283
Carg04292CmaCh01G000780Cucurbita maxima (Rimu)carcmaB0278
Carg04292CmaCh17G007430Cucurbita maxima (Rimu)carcmaB0277
Carg04292CmoCh08G007210Cucurbita moschata (Rifu)carcmoB0289
Carg04292CmoCh17G007140Cucurbita moschata (Rifu)carcmoB0284
Carg04292Lsi02G029560Bottle gourd (USVL1VR-Ls)carlsiB177
Carg04292Lsi07G005540Bottle gourd (USVL1VR-Ls)carlsiB182
Carg04292Cp4.1LG12g08640Cucurbita pepo (Zucchini)carcpeB0280
Carg04292Cp4.1LG02g14280Cucurbita pepo (Zucchini)carcpeB0285
Carg04292Cp4.1LG17g05090Cucurbita pepo (Zucchini)carcpeB0283
Carg04292CsGy3G039070Cucumber (Gy14) v2carcgybB0211
Carg04292CsGy7G021310Cucumber (Gy14) v2carcgybB0219
Carg04292MELO3C024407.2Melon (DHL92) v3.6.1carmedB0207
Carg04292CsaV3_7G034960Cucumber (Chinese Long) v3carcucB0234
Carg04292CsaV3_3G044060Cucumber (Chinese Long) v3carcucB0226
Carg04292Cla97C07G140390Watermelon (97103) v2carwmbB0205
Carg04292Cla97C09G162400Watermelon (97103) v2carwmbB0208
Carg04292Bhi01G002585Wax gourdcarwgoB0249
Carg04292Bhi09G000325Wax gourdcarwgoB0254
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg04292Carg18746Silver-seed gourdcarcarB234
Carg04292Carg09478Silver-seed gourdcarcarB240
The following block(s) are covering this gene:
GeneOrganismBlock
Carg04292Silver-seed gourdcarcarB042
Carg04292Silver-seed gourdcarcarB102
Carg04292Silver-seed gourdcarcarB139
Carg04292Silver-seed gourdcarcarB233
Carg04292Silver-seed gourdcarcarB238
Carg04292Cucumber (Gy14) v1carcgyB0239
Carg04292Cucurbita maxima (Rimu)carcmaB0270
Carg04292Cucurbita maxima (Rimu)carcmaB0276
Carg04292Cucurbita maxima (Rimu)carcmaB0282
Carg04292Cucurbita moschata (Rifu)carcmoB0277
Carg04292Cucurbita moschata (Rifu)carcmoB0279
Carg04292Cucurbita moschata (Rifu)carcmoB0283
Carg04292Cucurbita moschata (Rifu)carcmoB0285
Carg04292Cucurbita pepo (Zucchini)carcpeB0284
Carg04292Cucurbita pepo (Zucchini)carcpeB0287
Carg04292Cucurbita pepo (Zucchini)carcpeB0290
Carg04292Wild cucumber (PI 183967)carcpiB0224
Carg04292Cucumber (Chinese Long) v2carcuB0216
Carg04292Cucumber (Chinese Long) v2carcuB0217
Carg04292Cucumber (Chinese Long) v3carcucB0223
Carg04292Bottle gourd (USVL1VR-Ls)carlsiB175
Carg04292Bottle gourd (USVL1VR-Ls)carlsiB180
Carg04292Melon (DHL92) v3.5.1carmeB0203
Carg04292Melon (DHL92) v3.5.1carmeB0204
Carg04292Melon (DHL92) v3.5.1carmeB0209
Carg04292Melon (DHL92) v3.6.1carmedB0208
Carg04292Melon (DHL92) v3.6.1carmedB0209
Carg04292Melon (DHL92) v3.6.1carmedB0214
Carg04292Watermelon (Charleston Gray)carwcgB0192
Carg04292Watermelon (Charleston Gray)carwcgB0196
Carg04292Watermelon (97103) v1carwmB0190
Carg04292Watermelon (97103) v1carwmB0195
Carg04292Watermelon (97103) v2carwmbB0201
Carg04292Watermelon (97103) v2carwmbB0203
Carg04292Wax gourdcarwgoB0255