Carg04240 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04240
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Lys-63-specific deubiquitinase BRCC36
Location	Cucurbita_argyrosperma_scaffold_044 : 1001589 .. 1006230 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGACGGCCGTGAAGATGTCCGAAGACGTTTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTTCTTGGCGATATTGAGGTCACTCCCTAGATTTCCACTCTGCAATTTACTACCCCCCGTTTGATGGTTCTTCGACTTTGTTTCAGCTCATTCTCGTTTATTTTGCGTAATCTGATGTGGGTCTTGCTTTAATTTGTGTTTTTGGGTGTATACTTGTTGCTTGGCTGCTTGTATAGGATGTCTAGTTTGAAACGAAGGTTAAATTGGTTTCTTCTGTTGTTTTGGCAAATGGGGTTGTTGTGGTTTGAATCCTCTCTATATTGGAGTTTAGATTATTGTGCTTCGTTGGCTTAGTTTAATGATTCCGTGGTCATTTTGTAAAATTTGCAGTGAGGAGTGGTGTTTATGGTTCTCTCTGCAGGAGCTTTGATTCCAAATGATGTCTGTTAGAAATGAACTTGGTTTGTTTTTCACAAGAGTTCGTGTGAATTTGTTATATTAAGCATTGTTCTGTTTCTCTTTTATAGCTCTTGTTAGATGGTCTATCAGAATTATGGTAAACAGAGAATATTAATTCTAAAATTCATCTCTAGAGTTTGAATAGTTGTTTCATGGTTGATTCTCTAAGCTTCAAGCTCTTTCATGCCCTTTCTATCGGGTCCTGTATTTGCATTCTTACAAAATTATTGTTAATTCTGTCATATGTTCTGTTCTGACAATGAAAATTTGCAGCATTCAAAAAATGGAAGTGTTACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGATATATCCTTTGCTCCTTTTATCATTATGAAATTCTTCTAGACTTTGTCCTATTTATCTCCGTTCATCCTTTTAGTTCATCTTTTTTCTACTTTATCATTTGAATTAATTATTGTGCAACTGATCGACAATCTTGACAAATGAAAATATTTATCTCACAGTTCAACTTAAAGGTGCTAGTTTTATGAAGTAGTTTATCGTAATGAGGTTAACTATTCAAATACTTAAGGAATCTTTTGCTTCTGTAATTTTCACTAGTAATTAAACCTATGAAACTATTTTCTTTTATTCTATAATGTTATATACTTAATTTTATAGAACAGAATGACAACAATGACTGGGAGAACAACAAGAGTTATTGGATGGTACCATTCACATCCTCATATAACAGTGCTTCCTTCTCATGTTGGTTAGTATTGACTTGTCTATGGTGTCCAATTGTGACCCATCTTGCTCTTGAAATGTAATAACACCAAATGTAAAACGCTTTGCTCATCGATGAATTGGTTTCCATCTTGTTCTCCTTTCGTATGTTTCAGCTGGTGATCAAGATTCCGTTCCATCTTGATATACCACATTATATCATCCTTTGAGTGAGAATGTTCTATTGATGATCAGGGACCAAGTCTTACTTGGAGATCCTAGATTTCTAGCCTTTTCCTTTACATTTTCCAATGGAAGGCCCTTTGTTTCATATAATTTGTTATTAAGAAAAACCTTCACACATGGTTTTCGTTTGGTGTCACTTGCCAGGGTAATATAAAATAAAAGGCTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTTCTTCGTGTTCTAATGGTTCTATAATATTAAAAAGAATCTAGGTCTCAGGAAATTTCATTAGCGCAGCTCTTTTTCCTCTTTGTATTCATCGAGAAGACTAAAATTTCCAATGGCTGGCTCTTGGCTGGTTTTATATCCTTATTTTTTTTAACAAAGAGTTCAAAGAGTTGGCTGATTTAGTTAAGCATTATTCTACAAAAGAAAAGCTGTGATGGATATCCTTACGTTGTTTGGGATGATATCCGACCTTTCATGTCAAAGTCTAGTTCCATCTCCCTAAATCTTGCATGTTATGTCTTTGCTGCAATATAAGCTATTGGAAATTTTTTTAATCTTTTTTTGGCACTTTTCAATTAAAGAAAAATAACTCCTTCAATCTTGTCAATTGTACTTTCTGCAGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGGTTTATTGGGCTGATATTTTCCTGCTTTAGTGAAGATGCAAACAAGGTTTGAGTAGTTTTATTTACTTTGAACAGTTATCTCTTTGCATGTTTGCTAAACATAGTTGGATAATTTCAGGTTGGAAGAATTCAAGTTATTGCTTTCCAGTCCTCTGATGGAAAACAGAATCACCTCTCAAGACCTATTTCCTTATCTCCTATGTATCGAAATTCAGTGATCGATGTTGAATCTTCTTTGAGTTCCTCTGATAATTTATCAGCAAAAGTGGGCGGACCAGGGGAGAGTCCCGAACAAGACACTGGTGATTCAATGGTTGCTGGAGCTATGAAGGTAGAAATACAACATATGTGCTTTACAAAGACACCTAAATCTGGATGTTAACATTCATATGACCAGCTTAGGTTGAATGATAAGCAGAAGGTTTTGCTTAAGTATCAATTTTCAGGCAAGCATGATGTTTAAGTTGGACTGTTTATTAATGGGGAAACATGTTGACTCTGAAAATTTTTAATTGATTGATACTTCATGAGTTCTGCATTGGTTTAGATCAATAAATTTTATGCAGAAAAATAATAGCTTACCACCTTTGAGGATCAAATTCAGGTACTTTAATGGGTTGAATTCACATTTTCTATCTTTTCTTATGCTCTGACTGTGGGTAAAGCTGCATGTCCTAGTATTTTCGTAACAGCCCAAGCTCACCGCTAGCATATATTGTCCTTTTTGGGCTTTCCCTTTCAAGATTTTTCTCAAGGTTTTAAACGCGTCTCCTAGGGAGAGGCTTCCATACCCTTATAAGTAATGTTTCGTTCTCCTCTCCAACCAATGTGGAATCTCACAATTTTTTATTGCCCTCTGTCTCGTACATCTTCCATCAATCACTATCCTCTCATTTTCATGTCAGTTGGGAAAATCATTGTTGTAAACGTGTTTGGTGAAAACTTCTGTGTTTCTCATCTGATATGATGTTGTTGCTAATCACTTAGCTCAGGATAATCAATTGGTAACTGTTTGTCGTCAAAGGAAATATCTAAGCATGTGCTCCTTGGATTTTATCTAATAATCCAGTTCCGGGAGTTCACTTTTGTTAACATTTGCAAGTGCGGTGCATTAAATATTTCATCCTTATTGATGTGTATGGCTCGTTCGACATGGTTTACAGGGTTCTGGACGATCTTCAGAGTTGGGTTATTTCTTTGCTAATGCTGACACCAACTACCAAGGAAAAGAAAAAATGGGGGGTAGCTATCTTACTAGCAATACAAACAGTGGTACTACTGATATCGATCCTATGGACTTGACTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATCGAAATGAGGTACGTATGAAATGCAGATTTCTCGGCATTATCCTCAATTTTCATACAGTTATCTACGAATGGCTTTATCTTCTAACTGGTTCAAACTGCGTTACTCATGACTTAGTTAACTTGTATTGCTGCATGAATATGGAGTCAGATGTGGCAGTATCTTGTTATTTTGTTCTTCCTTGAAGAACATTCATTATCATCATTTTTTTTTTCTCGAGCTGACGAACTTGGGCTTTACCACTCCTGATTGTGAATTTGTTGTCTTTTGCTGCCAGTGCTGCTGAATTCTCAAGGAAAGAGATTCCTCTGCATGTTATGCCGAGTGCTTCCCTCATAAAGCTTGATTCACCATTAATGTCTTTTACAGATTTACAAAATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTTAAATAATATGAAGTACTGAAATGATTATTTCTTTCATGAATCAATCCATGGTTTCATAACCCATTGCTTTTGGCTCTGATCATTGCTTTTGTTTCTTGTAGGGATGGGAAAGCGCATCCGCTGACGTTCATACATCACACCTCAACATATCAGGCTTCAATGTGCAAGTTAATTGAATATTGGTTAGCCTTCAACCATTCATTTGTGCTCTTTTGTTCTTCATGCCTCATTTGATTGAACTTGTTCTTAGTGATATTTTCATTGCTTGCAGTCTTAGTCCTGCCATAACCGCGCTCCAGGACCGTCTAAAAGAGAACGAAATTCGGGTATGAATCGACTCCAAACACTCCATTTACATAGATTGATCCCATTGATTTTATGACCTGGACTCAAATGGAACATCTTCTGCACATAAGTTGTTGATGATCCCTTTGCTCTGATGAATTCAAACCATTACATCATTATACAGCAAAAGAGTGTTAGATTGTTAGATAGTTTCAATATGATTTTAGAGGTTGATAAATTTCACCTTAAAACAGTTAGCATTGCTGGCTGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGGAAAATCAAACGAGTCAGTCCCGGGATCACCTCACCAAGTCACTCATGGATCTCGAGCAAGCGCTTCGACAACACACAGGGACTCGTATGCTTCAACTGCATCAGTCGGTGCTCGAACCACAGGAAGCTCTGTTCACCGAAGTAGAAAGGGGTTGTGA

mRNA sequence

ATGTCTCTGACGGCCGTGAAGATGTCCGAAGACGTTTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTTCTTGGCGATATTGAGCATTCAAAAAATGGAAGTGTTACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTAACAGAATGACAACAATGACTGGGAGAACAACAAGAGTTATTGGATGGTACCATTCACATCCTCATATAACAGTGCTTCCTTCTCATGTTGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGGTTTATTGGGCTGATATTTTCCTGCTTTAGTGAAGATGCAAACAAGGTTGGAAGAATTCAAGTTATTGCTTTCCAGTCCTCTGATGGAAAACAGAATCACCTCTCAAGACCTATTTCCTTATCTCCTATGTATCGAAATTCAGTGATCGATGTTGAATCTTCTTTGAGTTCCTCTGATAATTTATCAGCAAAAGTGGGCGGACCAGGGGAGAGTCCCGAACAAGACACTGGTGATTCAATGGTTGCTGGAGCTATGAAGGGTTCTGGACGATCTTCAGAGTTGGGTTATTTCTTTGCTAATGCTGACACCAACTACCAAGGAAAAGAAAAAATGGGGGGTAGCTATCTTACTAGCAATACAAACAGTGGTACTACTGATATCGATCCTATGGACTTGACTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATCGAAATGAGTGCTGCTGAATTCTCAAGGAAAGAGATTCCTCTGCATGTTATGCCGAGTGCTTCCCTCATAAAGCTTGATTCACCATTAATGTCTTTTACAGATTTACAAAATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTTAAATAATATGAAGGATGGGAAAGCGCATCCGCTGACGTTCATACATCACACCTCAACATATCAGGCTTCAATGTGCAATCTTAGTCCTGCCATAACCGCGCTCCAGGACCGTCTAAAAGAGAACGAAATTCGGTTAGCATTGCTGGCTGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGGAAAATCAAACGAGTCAGTCCCGGGATCACCTCACCAAGTCACTCATGGATCTCGAGCAAGCGCTTCGACAACACACAGGGACTCGTATGCTTCAACTGCATCAGTCGGTGCTCGAACCACAGGAAGCTCTGTTCACCGAAGTAGAAAGGGGTTGTGA

Coding sequence (CDS)

ATGTCTCTGACGGCCGTGAAGATGTCCGAAGACGTTTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTTCTTGGCGATATTGAGCATTCAAAAAATGGAAGTGTTACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTAACAGAATGACAACAATGACTGGGAGAACAACAAGAGTTATTGGATGGTACCATTCACATCCTCATATAACAGTGCTTCCTTCTCATGTTGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGGTTTATTGGGCTGATATTTTCCTGCTTTAGTGAAGATGCAAACAAGGTTGGAAGAATTCAAGTTATTGCTTTCCAGTCCTCTGATGGAAAACAGAATCACCTCTCAAGACCTATTTCCTTATCTCCTATGTATCGAAATTCAGTGATCGATGTTGAATCTTCTTTGAGTTCCTCTGATAATTTATCAGCAAAAGTGGGCGGACCAGGGGAGAGTCCCGAACAAGACACTGGTGATTCAATGGTTGCTGGAGCTATGAAGGGTTCTGGACGATCTTCAGAGTTGGGTTATTTCTTTGCTAATGCTGACACCAACTACCAAGGAAAAGAAAAAATGGGGGGTAGCTATCTTACTAGCAATACAAACAGTGGTACTACTGATATCGATCCTATGGACTTGACTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATCGAAATGAGTGCTGCTGAATTCTCAAGGAAAGAGATTCCTCTGCATGTTATGCCGAGTGCTTCCCTCATAAAGCTTGATTCACCATTAATGTCTTTTACAGATTTACAAAATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTTAAATAATATGAAGGATGGGAAAGCGCATCCGCTGACGTTCATACATCACACCTCAACATATCAGGCTTCAATGTGCAATCTTAGTCCTGCCATAACCGCGCTCCAGGACCGTCTAAAAGAGAACGAAATTCGGTTAGCATTGCTGGCTGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGGAAAATCAAACGAGTCAGTCCCGGGATCACCTCACCAAGTCACTCATGGATCTCGAGCAAGCGCTTCGACAACACACAGGGACTCGTATGCTTCAACTGCATCAGTCGGTGCTCGAACCACAGGAAGCTCTGTTCACCGAAGTAGAAAGGGGTTGTGA

Protein sequence

MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRRKDRNRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSSDNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTSNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFTDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCNLSPAITALQDRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVGARTTGSSVHRSRKGL

Homology

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BLAST of Carg04240 vs. NCBI nr
Match: XP_022948552.1 (lys-63-specific deubiquitinase BRCC36-like [Cucurbita moschata])

HSP 1 Score: 777.7 bits (2007), Expect = 2.0e-221
Identity = 412/435 (94.71%), Postives = 413/435 (94.94%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +RMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQADRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS 240
           DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS
Sbjct: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS 240

Query: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT 300
           NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT
Sbjct: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT 300

Query: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQD 360
           DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMC      LSPAITALQD
Sbjct: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCKLIEYCLSPAITALQD 360

Query: 361 RLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 416
           RLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG
Sbjct: 361 RLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 420

[Close]

BLAST of Carg04240 vs. NCBI nr
Match: XP_023525485.1 (lys-63-specific deubiquitinase BRCC36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 775.0 bits (2000), Expect = 1.3e-220
Identity = 410/435 (94.25%), Postives = 413/435 (94.94%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +RMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQADRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS 240
           DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS
Sbjct: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS 240

Query: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT 300
           NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT
Sbjct: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT 300

Query: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQD 360
           DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMC      LSPAI+ALQD
Sbjct: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCKLIEYCLSPAISALQD 360

Query: 361 RLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 416
           RLKENEIRLALLAEEARNLE+EAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG
Sbjct: 361 RLKENEIRLALLAEEARNLELEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 420

[Close]

BLAST of Carg04240 vs. NCBI nr
Match: XP_022998919.1 (lys-63-specific deubiquitinase BRCC36-like [Cucurbita maxima])

HSP 1 Score: 758.8 bits (1958), Expect = 9.4e-216
Identity = 403/435 (92.64%), Postives = 408/435 (93.79%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEH KNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHLKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +RMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQADRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTS 240
           DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMG SYLTS
Sbjct: 181 DNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGDSYLTS 240

Query: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFT 300
           NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDS LMSFT
Sbjct: 241 NTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSSLMSFT 300

Query: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQD 360
           DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMC      LSPAI+ALQD
Sbjct: 301 DLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCKLIEYCLSPAISALQD 360

Query: 361 RLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 416
           RLKENE RLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG
Sbjct: 361 RLKENETRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVG 420

[Close]

BLAST of Carg04240 vs. NCBI nr
Match: XP_004152213.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Cucumis sativus] >KGN52872.1 hypothetical protein Csa_4G004830 [Cucumis sativus])

HSP 1 Score: 724.2 bits (1868), Expect = 2.6e-205
Identity = 383/436 (87.84%), Postives = 400/436 (91.74%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR                RMT MTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQAERMTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVG-GPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLT 240
           DN+S  VG GPGE+PEQDTGDSM+AGA+KG+GRSSELGYFFANADTNYQGKEK+GGSYL 
Sbjct: 181 DNVSGNVGYGPGENPEQDTGDSMIAGALKGTGRSSELGYFFANADTNYQGKEKIGGSYLI 240

Query: 241 SNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSF 300
           +NTNSG TDIDPMDL+ESMQEAMHRSNIEMSAAEFSRKEIPLHVMP+ASLIKLDSPL SF
Sbjct: 241 NNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLDSPLTSF 300

Query: 301 TDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQ 360
           TDLQ+VLFEEERSAYNQAI NNMKDGK HPLTFIHHTSTYQASMC      LSPAI+ALQ
Sbjct: 301 TDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSPAISALQ 360

Query: 361 DRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASV 416
           DR+KENEIRLALLAEEARNLEVEA K+NESVPGSPHQVTHGSRASAS THRD Y STASV
Sbjct: 361 DRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQVTHGSRASASPTHRDLYPSTASV 420

[Close]

BLAST of Carg04240 vs. NCBI nr
Match: XP_008454260.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X1 [Cucumis melo])

HSP 1 Score: 721.8 bits (1862), Expect = 1.3e-204
Identity = 382/436 (87.61%), Postives = 399/436 (91.51%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR                RMT MTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQAERMTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVG-GPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLT 240
           DN+S  VG GPGE+PEQDTGDSM+AGA+KG+GRSSELGYFFANADTNYQGKEK+GGSY  
Sbjct: 181 DNVSGNVGYGPGENPEQDTGDSMIAGALKGTGRSSELGYFFANADTNYQGKEKIGGSYRI 240

Query: 241 SNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSF 300
           +NTNSG TDIDPMDL+ESMQEAMHRSNIEMSAAEFSRKEIPLHVMP+ASLIKLDSPL SF
Sbjct: 241 NNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLDSPLTSF 300

Query: 301 TDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQ 360
           TDLQ+VLFEEERSAYNQAI NNMKDGK HPLTFIHHTSTYQASMC      LSPAI+ALQ
Sbjct: 301 TDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSPAISALQ 360

Query: 361 DRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASV 416
           DR+KENEIRLALLAEEARNLEVEA K+NESVPGSPHQVTHGSRASAS THRD Y STASV
Sbjct: 361 DRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQVTHGSRASASPTHRDLYPSTASV 420

[Close]

BLAST of Carg04240 vs. TAIR10
Match: AT1G80210.1 (Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 441.8 bits (1135), Expect = 4.6e-124
Identity = 245/404 (60.64%), Postives = 297/404 (73.51%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKN-GSVTALIWGASPQTRSDR 60
           MSLT V MSEDVW TCLTHALSTETEEIMGLLLGDIE+SK+ GS TA+IWGASPQ+RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDR 60

Query: 61  RKDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLL 120
           +KDR               +RMT  TGRTTRVIGWYHSHPHITVLPSHVDVRTQ  YQLL
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSS 180
           DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK N + + +SL    ++SVID+ESS SS
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDLESSFSS 180

Query: 181 SDNLSAKVGGP-GESPEQDTGDSMVAGAMKGSGRSSELGYFFA-NADTNYQGKEKMGGSY 240
           SD++  +     G++PE DT D+      KG GR S+   FF  N + N   ++   G+Y
Sbjct: 181 SDSIYQRSSSARGDNPELDTSDTATTSGSKGGGRVSDFEAFFVNNTEANNTRRDGTSGNY 240

Query: 241 LTSNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLM 300
                +S   +ID MD++ESMQEAMHRSN+E S   + RKE+PLHV+P++SL++L+SPL 
Sbjct: 241 -----SSTAIEIDSMDMSESMQEAMHRSNLETSGVGYVRKEVPLHVLPTSSLLQLNSPLA 300

Query: 301 SFTDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITA 360
           SF  LQ VL+EEER+AY+Q++  + +DG+ HPL FIH+TSTYQASMC      LSPAI A
Sbjct: 301 SFKSLQRVLYEEERAAYHQSVQQSKRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINA 360

Query: 361 LQDRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGS 382
           LQDRLKEN+IRLA+L +EA  LE +  K  E+  G   ++ HGS
Sbjct: 361 LQDRLKENKIRLAMLMDEAEVLEAQKLKGAET-SGGASRLVHGS 398

[Close]

BLAST of Carg04240 vs. TAIR10
Match: AT3G06820.2 (Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 438.3 bits (1126), Expect = 5.1e-123
Identity = 246/403 (61.04%), Postives = 294/403 (72.95%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNG-SVTALIWGASPQTRSDR 60
           MSLT V MSEDVW TCLTHALSTETEEIMGLLLGDIE+SKNG S TA+IWGASPQ RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKNGESATAMIWGASPQPRSDR 60

Query: 61  RKDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLL 120
           +KDR               +RMT  TGRTTRVIGWYHSHPHITVLPSHVDVRTQ  YQLL
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSS 180
           DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK N + + +SL    ++SVID+ESS SS
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDIESSSSS 180

Query: 181 SDNLSAKVGGPGESPEQDTGDSMVAGAMKGSGRSSELGYFFA-NADTNYQGKEKMGGSYL 240
           SD++  +       PE DT D+      KG GR S+ G FF  N + N  G+++   ++ 
Sbjct: 181 SDSIYQR--SSSSKPELDTIDTATTSGSKGGGRVSDFGPFFTNNIEANITGRDE---THK 240

Query: 241 TSNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMS 300
           + N +S T  ID MD++ESMQEAM RSN++ S A + RKE+PLHV+P++SL+ ++SPL S
Sbjct: 241 SGNLSSTTIGIDSMDMSESMQEAMLRSNLDTSGAGYVRKEVPLHVLPTSSLLPVNSPLAS 300

Query: 301 FTDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITAL 360
           F  LQ VL+EEER+AY Q++  NM+DG+ HPL FIH+TSTYQASMC      LSPAI AL
Sbjct: 301 FKSLQRVLYEEERAAYYQSVQQNMRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINAL 360

Query: 361 QDRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGS 382
           QDR KEN+IRLA+L +EA  LE +  K  E+    P  + HGS
Sbjct: 361 QDRQKENKIRLAMLMDEAEVLEAQKLKGAET-SRRPSHLVHGS 397

[Close]

BLAST of Carg04240 vs. TAIR10
Match: AT1G71230.1 (COP9-signalosome 5B)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-05
Identity = 41/154 (26.62%), Postives = 64/154 (41.56%), Query Frame = 0


Query: 6   VKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGA------SPQTRSDR 65
           VK+S       + HA S  T EIMGL+ G     K    T ++  A        +TR + 
Sbjct: 59  VKISALALLKMVVHARSGGTIEIMGLMQG-----KTDGDTIIVMDAFALPVEGTETRVNA 118

Query: 66  RKDR-------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLI 125
           + D        ++   + GR   V+GWYHSHP      S +DV TQ   Q     F+ ++
Sbjct: 119 QDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVV 178

Query: 126 FSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPIS 147
                      G++++ AF++          P+S
Sbjct: 179 ID--PTRTVSAGKVEIGAFRTYSKGYKPPDEPVS 205

[Close]

BLAST of Carg04240 vs. TAIR10
Match: AT1G22920.1 (COP9 signalosome 5A)

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 36/130 (27.69%), Postives = 58/130 (44.62%), Query Frame = 0


Query: 17  LTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGA------SPQTRSDRRKDR------- 76
           + HA S  T EIMGL+ G  E       T ++  A        +TR + + D        
Sbjct: 70  VVHARSGGTIEIMGLMQGKTEGD-----TIIVMDAFALPVEGTETRVNAQSDAYEYMVEY 129

Query: 77  NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKV 134
           ++ + + GR   V+GWYHSHP      S +DV TQ   Q     F+ ++           
Sbjct: 130 SQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID--PTRTVSA 189

[Close]

BLAST of Carg04240 vs. TAIR10
Match: AT5G23540.1 (Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 36/126 (28.57%), Postives = 57/126 (45.24%), Query Frame = 0


Query: 17  LTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRS-------DRRKDRNR--MT 76
           L H  +    E+MGL+LG+        V  +   A PQ+ +       D     N   M 
Sbjct: 41  LKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVF--AMPQSGTGVSVEAVDHVFQTNMLDML 100

Query: 77  TMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKVGRIQ 134
             TGR   V+GWYHSHP      S VD+ TQ +++ L+   + ++        +  G++ 
Sbjct: 101 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQ---SVKGKVV 160

[Close]

BLAST of Carg04240 vs. Swiss-Prot
Match: sp|B5X8M4|BRCC3_SALSA (Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar OX=8030 GN=brcc3 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-32
Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           M+++AV +  D +  C+ HALSTE EE+MGL +G+++ ++   + ++I       RSD+R
Sbjct: 1   MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVI----ILRRSDKR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR                R+  MTGR  RV+GWYHSHPHITV PSHVDVRTQ  YQ++D
Sbjct: 61  KDRVEISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 120

Query: 121 SGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQ----NHLSRPISLSPMYRNSVIDVES 163
            GF+GLIFSCF ED N K GR+    FQS   ++      +  PI + P      + +ES
Sbjct: 121 QGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIGKVCLES 178

[Close]

BLAST of Carg04240 vs. Swiss-Prot
Match: sp|Q66GV6|BRCC3_XENLA (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis OX=8355 GN=brcc3 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.8e-32
Identity = 74/155 (47.74%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           M++ AV +  D +  C+TH+LSTE EE+MGL +G+++  K   + ++I       RSD+R
Sbjct: 1   MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKLVHIHSVI----ILRRSDKR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +R+  +TGR  RV+GWYHSHPHITV PSHVDVRTQ  YQ++D
Sbjct: 61  KDRVEISPEQLSAATIEADRLADITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 120

Query: 121 SGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 140
            GF+GLIFSCF ED N K GRI    FQS   +++
Sbjct: 121 VGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKS 151

[Close]

BLAST of Carg04240 vs. Swiss-Prot
Match: sp|Q4VA72|BRCC3_XENTR (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis OX=8364 GN=brcc3 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.8e-32
Identity = 74/155 (47.74%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           M++ AV +  D +  C+TH+LSTE EE+MGL +G+++  K   + ++I       RSD+R
Sbjct: 1   MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKVVHIHSVI----ILRRSDKR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +R+  +TGR  RV+GWYHSHPHITV PSHVDVRTQ  YQ++D
Sbjct: 61  KDRVEISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 120

Query: 121 SGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 140
            GF+GLIFSCF ED N K GRI    FQS   +++
Sbjct: 121 VGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKS 151

[Close]

BLAST of Carg04240 vs. Swiss-Prot
Match: sp|Q5R9L6|BRCC3_PONAB (Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii OX=9601 GN=BRCC3 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-30
Identity = 78/191 (40.84%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 2   SLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQT------ 61
           ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T      
Sbjct: 8   AVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVD 67

Query: 62  --------------RSDRRKDR---------------NRMTTMTGRTTRVIGWYHSHPHI 121
                         RSD+RKDR                R+  +TGR  RV+GWYHSHPHI
Sbjct: 68  AVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHI 127

Query: 122 TVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDG-KQNHLSRP 156
           TV PSHVDVRTQ  YQ++D GF+GLIFSCF ED N K GR+    FQS    K + L+  
Sbjct: 128 TVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSDLTHL 187

[Close]

BLAST of Carg04240 vs. Swiss-Prot
Match: sp|P46737|BRCC3_MOUSE (Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus OX=10090 GN=Brcc3 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.7e-30
Identity = 78/201 (38.81%), Postives = 104/201 (51.74%), Query Frame = 0


Query: 2   SLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQT------ 61
           ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T      
Sbjct: 8   AVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMD 67

Query: 62  --------------RSDRRKDR---------------NRMTTMTGRTTRVIGWYHSHPHI 121
                         RSD+RKDR                R+  +TGR  RV+GWYHSHPHI
Sbjct: 68  TIRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHI 127

Query: 122 TVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HL 163
           TV PSHVDVRTQ  YQ++D GF+GLIFSCF ED N K GR+    FQS   +++     +
Sbjct: 128 TVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERI 187

[Close]

BLAST of Carg04240 vs. TrEMBL
Match: tr|A0A0A0KWR1|A0A0A0KWR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004830 PE=4 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 1.7e-205
Identity = 383/436 (87.84%), Postives = 400/436 (91.74%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR                RMT MTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQAERMTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVG-GPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLT 240
           DN+S  VG GPGE+PEQDTGDSM+AGA+KG+GRSSELGYFFANADTNYQGKEK+GGSYL 
Sbjct: 181 DNVSGNVGYGPGENPEQDTGDSMIAGALKGTGRSSELGYFFANADTNYQGKEKIGGSYLI 240

Query: 241 SNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSF 300
           +NTNSG TDIDPMDL+ESMQEAMHRSNIEMSAAEFSRKEIPLHVMP+ASLIKLDSPL SF
Sbjct: 241 NNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLDSPLTSF 300

Query: 301 TDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQ 360
           TDLQ+VLFEEERSAYNQAI NNMKDGK HPLTFIHHTSTYQASMC      LSPAI+ALQ
Sbjct: 301 TDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSPAISALQ 360

Query: 361 DRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASV 416
           DR+KENEIRLALLAEEARNLEVEA K+NESVPGSPHQVTHGSRASAS THRD Y STASV
Sbjct: 361 DRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQVTHGSRASASPTHRDLYPSTASV 420

[Close]

BLAST of Carg04240 vs. TrEMBL
Match: tr|A0A1S3BY68|A0A1S3BY68_CUCME (lys-63-specific deubiquitinase BRCC36 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494717 PE=4 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 8.5e-205
Identity = 382/436 (87.61%), Postives = 399/436 (91.51%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR                RMT MTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD
Sbjct: 61  KDRVETHPEQLAAASAQAERMTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSS
Sbjct: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSS 180

Query: 181 DNLSAKVG-GPGESPEQDTGDSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLT 240
           DN+S  VG GPGE+PEQDTGDSM+AGA+KG+GRSSELGYFFANADTNYQGKEK+GGSY  
Sbjct: 181 DNVSGNVGYGPGENPEQDTGDSMIAGALKGTGRSSELGYFFANADTNYQGKEKIGGSYRI 240

Query: 241 SNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSF 300
           +NTNSG TDIDPMDL+ESMQEAMHRSNIEMSAAEFSRKEIPLHVMP+ASLIKLDSPL SF
Sbjct: 241 NNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLDSPLTSF 300

Query: 301 TDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQ 360
           TDLQ+VLFEEERSAYNQAI NNMKDGK HPLTFIHHTSTYQASMC      LSPAI+ALQ
Sbjct: 301 TDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSPAISALQ 360

Query: 361 DRLKENEIRLALLAEEARNLEVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASV 416
           DR+KENEIRLALLAEEARNLEVEA K+NESVPGSPHQVTHGSRASAS THRD Y STASV
Sbjct: 361 DRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQVTHGSRASASPTHRDLYPSTASV 420

[Close]

BLAST of Carg04240 vs. TrEMBL
Match: tr|A0A1S3BZE9|A0A1S3BZE9_CUCME (lys-63-specific deubiquitinase BRCC36 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494717 PE=4 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 4.0e-170
Identity = 318/356 (89.33%), Postives = 335/356 (94.10%), Query Frame = 0


Query: 66  MTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKVGR 125
           MT MTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKVGR
Sbjct: 1   MTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIFSCFSEDANKVGR 60

Query: 126 IQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSSDNLSAKVG-GPGESPEQDTG 185
           IQVIAFQSSDGKQNHLSRPISLSP+YRNSVIDVESSLSSSDN+S  VG GPGE+PEQDTG
Sbjct: 61  IQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVESSLSSSDNVSGNVGYGPGENPEQDTG 120

Query: 186 DSMVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYLTSNTNSGTTDIDPMDLTESMQ 245
           DSM+AGA+KG+GRSSELGYFFANADTNYQGKEK+GGSY  +NTNSG TDIDPMDL+ESMQ
Sbjct: 121 DSMIAGALKGTGRSSELGYFFANADTNYQGKEKIGGSYRINNTNSGITDIDPMDLSESMQ 180

Query: 246 EAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMSFTDLQNVLFEEERSAYNQAIL 305
           EAMHRSNIEMSAAEFSRKEIPLHVMP+ASLIKLDSPL SFTDLQ+VLFEEERSAYNQAI 
Sbjct: 181 EAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLDSPLTSFTDLQHVLFEEERSAYNQAIS 240

Query: 306 NNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITALQDRLKENEIRLALLAEEARNL 365
           NNMKDGK HPLTFIHHTSTYQASMC      LSPAI+ALQDR+KENEIRLALLAEEARNL
Sbjct: 241 NNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSPAISALQDRVKENEIRLALLAEEARNL 300

Query: 366 EVEAGKSNESVPGSPHQVTHGSRASASTTHRDSYASTASVGARTTGSSVHRSRKGL 416
           EVEA K+NESVPGSPHQVTHGSRASAS THRD Y STASVGAR+ GSS++RSRKGL
Sbjct: 301 EVEAAKANESVPGSPHQVTHGSRASASPTHRDLYPSTASVGARSGGSSMYRSRKGL 356

[Close]

BLAST of Carg04240 vs. TrEMBL
Match: tr|V4SII3|V4SII3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10025661mg PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 1.0e-154
Identity = 303/438 (69.18%), Postives = 353/438 (80.59%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLT VKMSEDVW TCLTHALSTETEEIMGLLLGDIEHSKNG+VTALIWGASPQ+RSDRR
Sbjct: 1   MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +RMT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ  YQLLD
Sbjct: 61  KDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           +GFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH+S+PI+L P+ +++VID+ESSLSSS
Sbjct: 121 TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSS 180

Query: 181 DNLSAKVGGP-GESPEQDTGDS-MVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYL 240
           ++LSA+ G    E+PEQDTGDS +VAG+ KG GR+SELG FFAN D N+  + + GG+Y 
Sbjct: 181 ESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQ 240

Query: 241 TSNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMS 300
           T + ++   DIDPMD++ESMQEAMHRSN++MS AE+ RKEIPLHV+P++SL+KLDSPL S
Sbjct: 241 TGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTS 300

Query: 301 FTDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITAL 360
           FTDLQ VL+EEER+AYNQAI+ NM DGK HPLT+IHHTSTYQASMC      LSPAI+AL
Sbjct: 301 FTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISAL 360

Query: 361 QDRLKENEIRLALLAEEARNLEVEAGKSNESVPGSP-HQVTHGSRASASTTHRDSYASTA 416
           QDRLKENEIRLA+L +EA++LE EA K ++S   SP H  +HG R SA       Y  T+
Sbjct: 361 QDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSA-------YFHTS 420

[Close]

BLAST of Carg04240 vs. TrEMBL
Match: tr|A0A067ECR8|A0A067ECR8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014126mg PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 1.0e-154
Identity = 303/438 (69.18%), Postives = 353/438 (80.59%), Query Frame = 0


Query: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60
           MSLT VKMSEDVW TCLTHALSTETEEIMGLLLGDIEHSKNG+VTALIWGASPQ+RSDRR
Sbjct: 1   MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60

Query: 61  KDR---------------NRMTTMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLD 120
           KDR               +RMT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ  YQLLD
Sbjct: 61  KDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 120

Query: 121 SGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPMYRNSVIDVESSLSSS 180
           +GFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH+S+PI+L P+ +++VID+ESSLSSS
Sbjct: 121 TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSS 180

Query: 181 DNLSAKVGGP-GESPEQDTGDS-MVAGAMKGSGRSSELGYFFANADTNYQGKEKMGGSYL 240
           ++LSA+ G    E+PEQDTGDS +VAG+ KG GR+SELG FFAN D N+  + + GG+Y 
Sbjct: 181 ESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQ 240

Query: 241 TSNTNSGTTDIDPMDLTESMQEAMHRSNIEMSAAEFSRKEIPLHVMPSASLIKLDSPLMS 300
           T + ++   DIDPMD++ESMQEAMHRSN++MS AE+ RKEIPLHV+P++SL+KLDSPL S
Sbjct: 241 TGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTS 300

Query: 301 FTDLQNVLFEEERSAYNQAILNNMKDGKAHPLTFIHHTSTYQASMCN-----LSPAITAL 360
           FTDLQ VL+EEER+AYNQAI+ NM DGK HPLT+IHHTSTYQASMC      LSPAI+AL
Sbjct: 301 FTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISAL 360

Query: 361 QDRLKENEIRLALLAEEARNLEVEAGKSNESVPGSP-HQVTHGSRASASTTHRDSYASTA 416
           QDRLKENEIRLA+L +EA++LE EA K ++S   SP H  +HG R SA       Y  T+
Sbjct: 361 QDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSA-------YFHTS 420

The following BLAST results are available for this feature:

BLAST of Carg04240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948552.1	2.0e-221	94.71	lys-63-specific deubiquitinase BRCC36-like [Cucurbita moschata]	[more]
XP_023525485.1	1.3e-220	94.25	lys-63-specific deubiquitinase BRCC36-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998919.1	9.4e-216	92.64	lys-63-specific deubiquitinase BRCC36-like [Cucurbita maxima]	[more]
XP_004152213.1	2.6e-205	87.84	PREDICTED: lys-63-specific deubiquitinase BRCC36 [Cucumis sativus] >KGN52872.1 h...	[more]
XP_008454260.1	1.3e-204	87.61	PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X1 [Cucumis melo]	[more]

BLAST of Carg04240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80210.1	4.6e-124	60.64	Mov34/MPN/PAD-1 family protein	[more]
AT3G06820.2	5.1e-123	61.04	Mov34/MPN/PAD-1 family protein	[more]
AT1G71230.1	1.1e-05	26.62	COP9-signalosome 5B	[more]
AT1G22920.1	2.5e-05	27.69	COP9 signalosome 5A	[more]
AT5G23540.1	2.5e-05	28.57	Mov34/MPN/PAD-1 family protein	[more]

BLAST of Carg04240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B5X8M4\|BRCC3_SALSA	1.4e-32	42.86	Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar OX=8030 GN=brcc3 PE=2 SV=1	[more]
sp\|Q66GV6\|BRCC3_XENLA	6.8e-32	47.74	Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis OX=8355 GN=brcc3 PE=2 SV...	[more]
sp\|Q4VA72\|BRCC3_XENTR	6.8e-32	47.74	Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis OX=8364 GN=brcc3 PE=...	[more]
sp\|Q5R9L6\|BRCC3_PONAB	1.7e-30	40.84	Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii OX=9601 GN=BRCC3 PE=2 SV=1	[more]
sp\|P46737\|BRCC3_MOUSE	3.7e-30	38.81	Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus OX=10090 GN=Brcc3 PE=1 SV=...	[more]

BLAST of Carg04240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWR1\|A0A0A0KWR1_CUCSA	1.7e-205	87.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004830 PE=4 SV=1	[more]
tr\|A0A1S3BY68\|A0A1S3BY68_CUCME	8.5e-205	87.61	lys-63-specific deubiquitinase BRCC36 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3BZE9\|A0A1S3BZE9_CUCME	4.0e-170	89.33	lys-63-specific deubiquitinase BRCC36 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|V4SII3\|V4SII3_9ROSI	1.0e-154	69.18	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10025661mg PE=4 ...	[more]
tr\|A0A067ECR8\|A0A067ECR8_CITSI	1.0e-154	69.18	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014126mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR037518	MPN
IPR000555	JAMM/MPN+_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04240-RA	Carg04240-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 335..362
None	No IPR available	GENE3D	G3DSA:3.40.140.10		coord: 1..148 e-value: 1.4E-41 score: 143.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..415
None	No IPR available	PANTHER	PTHR10410:SF2	LYS-63-SPECIFIC DEUBIQUITINASE BRCC36	coord: 1..364
None	No IPR available	PANTHER	PTHR10410	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	coord: 1..364
None	No IPR available	SUPERFAMILY	SSF102712	JAB1/MPN domain	coord: 5..119
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	SMART	SM00232	pad1_6	coord: 5..136 e-value: 2.5E-11 score: 53.7
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 3..105 e-value: 3.0E-22 score: 78.7
IPR037518	MPN domain	PROSITE	PS50249	MPN	coord: 6..137 score: 22.84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04240	Cla012698	Watermelon (97103) v1	carwmB0192
Carg04240	Csa4G004830	Cucumber (Chinese Long) v2	carcuB0226
Carg04240	MELO3C017901	Melon (DHL92) v3.5.1	carmeB0210
Carg04240	ClCG07G012810	Watermelon (Charleston Gray)	carwcgB0199
Carg04240	CSPI04G01400	Wild cucumber (PI 183967)	carcpiB0233
Carg04240	Cucsa.096590	Cucumber (Gy14) v1	carcgyB0235
Carg04240	CmaCh01G001320	Cucurbita maxima (Rimu)	carcmaB0278
Carg04240	CmaCh14G013380	Cucurbita maxima (Rimu)	carcmaB0276
Carg04240	CmoCh01G001400	Cucurbita moschata (Rifu)	carcmoB0285
Carg04240	CmoCh14G013660	Cucurbita moschata (Rifu)	carcmoB0283
Carg04240	Lsi07G004790	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04240	Cp4.1LG02g14790	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04240	Cp4.1LG03g13880	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04240	CsGy4G001290	Cucumber (Gy14) v2	carcgybB0215
Carg04240	MELO3C017901.2	Melon (DHL92) v3.6.1	carmedB0215
Carg04240	CsaV3_4G001390	Cucumber (Chinese Long) v3	carcucB0230
Carg04240	Cla97C07G139610	Watermelon (97103) v2	carwmbB0205
Carg04240	Bhi01G002779	Wax gourd	carwgoB0250

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04240	Carg06499	Silver-seed gourd	carcarB139

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04240	Watermelon (97103) v2	carwmbB0207
Carg04240	Watermelon (97103) v2	carwmbB0204
Carg04240	Watermelon (97103) v2	carwmbB0209
Carg04240	Wax gourd	carwgoB0246
Carg04240	Wax gourd	carwgoB0253
Carg04240	Silver-seed gourd	carcarB147
Carg04240	Silver-seed gourd	carcarB234
Carg04240	Silver-seed gourd	carcarB239
Carg04240	Silver-seed gourd	carcarB240
Carg04240	Cucumber (Gy14) v2	carcgybB0218
Carg04240	Cucurbita maxima (Rimu)	carcmaB0273
Carg04240	Cucurbita maxima (Rimu)	carcmaB0277
Carg04240	Cucurbita maxima (Rimu)	carcmaB0283
Carg04240	Cucurbita maxima (Rimu)	carcmaB0284
Carg04240	Cucurbita moschata (Rifu)	carcmoB0280
Carg04240	Cucurbita moschata (Rifu)	carcmoB0284
Carg04240	Cucurbita moschata (Rifu)	carcmoB0289
Carg04240	Cucurbita pepo (Zucchini)	carcpeB0280
Carg04240	Cucurbita pepo (Zucchini)	carcpeB0283
Carg04240	Cucurbita pepo (Zucchini)	carcpeB0291
Carg04240	Cucurbita pepo (Zucchini)	carcpeB0292
Carg04240	Wild cucumber (PI 183967)	carcpiB0225
Carg04240	Wild cucumber (PI 183967)	carcpiB0236
Carg04240	Cucumber (Chinese Long) v2	carcuB0218
Carg04240	Cucumber (Chinese Long) v2	carcuB0229
Carg04240	Cucumber (Chinese Long) v3	carcucB0233
Carg04240	Bottle gourd (USVL1VR-Ls)	carlsiB176
Carg04240	Bottle gourd (USVL1VR-Ls)	carlsiB181
Carg04240	Melon (DHL92) v3.5.1	carmeB0198
Carg04240	Melon (DHL92) v3.5.1	carmeB0209
Carg04240	Melon (DHL92) v3.6.1	carmedB0203
Carg04240	Watermelon (Charleston Gray)	carwcgB0190
Carg04240	Watermelon (Charleston Gray)	carwcgB0198
Carg04240	Watermelon (Charleston Gray)	carwcgB0201
Carg04240	Watermelon (97103) v1	carwmB0187
Carg04240	Watermelon (97103) v1	carwmB0189