Carg04225 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04225
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like
Location	Cucurbita_argyrosperma_scaffold_044 : 929026 .. 929241 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGGATGCGACGGTGGGGGATGGCTTGGATGTTCGACTTCCTCAACCTCCTCCAAGCGATTAGATTGTTGGGTACTCGAGGTCACTATACGATTGACTTGGCGGTGGGCGTGGGAGCCGGGATTCTTTTCGACTCGCTTGCAGGGCATTACTATGAAGGCAGCCAGAGGAAGAACATTGAGGACACTAAGTTAGCTAAAACCTTTGCATAA

mRNA sequence

ATGCGGCGGATGCGACGGTGGGGGATGGCTTGGATGTTCGACTTCCTCAACCTCCTCCAAGCGATTAGATTGTTGGGTACTCGAGGTCACTATACGATTGACTTGGCGGTGGGCGTGGGAGCCGGGATTCTTTTCGACTCGCTTGCAGGGCATTACTATGAAGGCAGCCAGAGGAAGAACATTGAGGACACTAAGTTAGCTAAAACCTTTGCATAA

Coding sequence (CDS)

ATGCGGCGGATGCGACGGTGGGGGATGGCTTGGATGTTCGACTTCCTCAACCTCCTCCAAGCGATTAGATTGTTGGGTACTCGAGGTCACTATACGATTGACTTGGCGGTGGGCGTGGGAGCCGGGATTCTTTTCGACTCGCTTGCAGGGCATTACTATGAAGGCAGCCAGAGGAAGAACATTGAGGACACTAAGTTAGCTAAAACCTTTGCATAA

Protein sequence

MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKNIEDTKLAKTFA

Homology

[Close]

BLAST of Carg04225 vs. NCBI nr
Match: XP_022949495.1 (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 6.5e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYE SQRKN
Sbjct: 214 MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEASQRKN 273

Query: 61  IEDTKLAKTFA 72
           IEDTKLAKTFA
Sbjct: 274 IEDTKLAKTFA 284

[Close]

BLAST of Carg04225 vs. NCBI nr
Match: XP_022998356.1 (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 6.5e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYE SQRKN
Sbjct: 214 MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEASQRKN 273

Query: 61  IEDTKLAKTFA 72
           IEDTKLAKTFA
Sbjct: 274 IEDTKLAKTFA 284

[Close]

BLAST of Carg04225 vs. NCBI nr
Match: XP_023525875.1 (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 9.3e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYE SQRKN
Sbjct: 214 MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEASQRKN 273

Query: 61  IEDTKLAKTFA 72
           IE+TKL KTFA
Sbjct: 274 IEETKLDKTFA 284

[Close]

BLAST of Carg04225 vs. NCBI nr
Match: XP_022153394.1 (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRM+RWG+AW FDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHY      KN
Sbjct: 201 MRRMQRWGLAWTFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYEATQNSKN 260

Query: 61  IEDTKLAKTFA 72
           + DT+L KTFA
Sbjct: 261 L-DTQLPKTFA 270

[Close]

BLAST of Carg04225 vs. NCBI nr
Match: XP_004152194.1 (PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucumis sativus] >KGN52910.1 hypothetical protein Csa_4G006170 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 5.5e-23
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRR++RWG+AW FDFLNLLQ IRLLGTRGHYTIDLAVGVGAG LFDSLAGHY    QRKN
Sbjct: 204 MRRVQRWGLAWTFDFLNLLQVIRLLGTRGHYTIDLAVGVGAGFLFDSLAGHYEACLQRKN 263

Query: 61  IEDTKLAKTF 71
           + D KLAKTF
Sbjct: 264 L-DNKLAKTF 272

[Close]

BLAST of Carg04225 vs. TAIR10
Match: AT3G15830.1 (phosphatidic acid phosphatase-related / PAP2-related)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-18
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQR 59
           M+RM+R+ +A +FD LN+LQ+IRLLGTRGHYTID+AVGVGAGILFDSLAG Y E S+R
Sbjct: 222 MKRMQRFRLAMVFDILNVLQSIRLLGTRGHYTIDIAVGVGAGILFDSLAGKYEEMSKR 279

[Close]

BLAST of Carg04225 vs. TAIR10
Match: AT3G15820.1 (phosphatidic acid phosphatase-related / PAP2-related)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRM+R  +A +FD LN+LQ+IRLLGTRGHYTIDLAVGVGAGILFDSLAG Y E   +++
Sbjct: 227 MRRMQRLRLAMVFDILNVLQSIRLLGTRGHYTIDLAVGVGAGILFDSLAGKYEEMMSKRH 286

Query: 61  I 62
           +
Sbjct: 287 L 287

[Close]

BLAST of Carg04225 vs. Swiss-Prot
Match: sp|Q9LVZ6|PDCT2_ARATH (Phosphatidylcholine:diacylglycerol cholinephosphotransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g15830 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-17
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQR 59
           M+RM+R+ +A +FD LN+LQ+IRLLGTRGHYTID+AVGVGAGILFDSLAG Y E S+R
Sbjct: 222 MKRMQRFRLAMVFDILNVLQSIRLLGTRGHYTIDIAVGVGAGILFDSLAGKYEEMSKR 279

[Close]

BLAST of Carg04225 vs. Swiss-Prot
Match: sp|Q9LVZ7|PDCT1_ARATH (Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 OS=Arabidopsis thaliana OX=3702 GN=ROD1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-17
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRRM+R  +A +FD LN+LQ+IRLLGTRGHYTIDLAVGVGAGILFDSLAG Y E   +++
Sbjct: 227 MRRMQRLRLAMVFDILNVLQSIRLLGTRGHYTIDLAVGVGAGILFDSLAGKYEEMMSKRH 286

Query: 61  I 62
           +
Sbjct: 287 L 287

[Close]

BLAST of Carg04225 vs. TrEMBL
Match: tr|A0A0A0KTG4|A0A0A0KTG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006170 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-23
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRR++RWG+AW FDFLNLLQ IRLLGTRGHYTIDLAVGVGAG LFDSLAGHY    QRKN
Sbjct: 204 MRRVQRWGLAWTFDFLNLLQVIRLLGTRGHYTIDLAVGVGAGFLFDSLAGHYEACLQRKN 263

Query: 61  IEDTKLAKTF 71
           + D KLAKTF
Sbjct: 264 L-DNKLAKTF 272

[Close]

BLAST of Carg04225 vs. TrEMBL
Match: tr|A0A1S3BY33|A0A1S3BY33_CUCME (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like OS=Cucumis melo OX=3656 GN=LOC103494688 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-23
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRKN 60
           MRR++RWG+AW FD LNLLQ IRLLGTRGHYTIDLAVGVGAG LFDSLAGHY    QRKN
Sbjct: 213 MRRVQRWGLAWTFDILNLLQVIRLLGTRGHYTIDLAVGVGAGFLFDSLAGHYEACLQRKN 272

Query: 61  IEDTKLAKTFA 72
           + D KLAKTFA
Sbjct: 273 L-DNKLAKTFA 282

[Close]

BLAST of Carg04225 vs. TrEMBL
Match: tr|F6HXE1|F6HXE1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g06990 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQR 59
           MRRM+RWGMAW FD LN+LQ +RLLGTRGHYTIDLAVG+GAG+LFDSLAG Y EG +R
Sbjct: 210 MRRMKRWGMAWTFDVLNILQGVRLLGTRGHYTIDLAVGIGAGVLFDSLAGKYEEGKRR 267

[Close]

BLAST of Carg04225 vs. TrEMBL
Match: tr|A0A1S2YMC3|A0A1S2YMC3_CICAR (phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like OS=Cicer arietinum OX=3827 GN=LOC101496358 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRK 60
           MRRM+RWG+AW FD LN+LQA+RLLGTRGHYTIDLAVG+GAG LFDSLAG Y E S++K
Sbjct: 201 MRRMKRWGLAWTFDVLNVLQAVRLLGTRGHYTIDLAVGLGAGYLFDSLAGKYVEDSKKK 259

[Close]

BLAST of Carg04225 vs. TrEMBL
Match: tr|A0A2K3JLX0|A0A2K3JLX0_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g048657 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MRRMRRWGMAWMFDFLNLLQAIRLLGTRGHYTIDLAVGVGAGILFDSLAGHYYEGSQRK 60
           MRRM+RW MAW FD LN+LQAIRLLGTRGHYTIDLAVG+GAG LFDSLAG Y E S+RK
Sbjct: 72  MRRMKRWEMAWTFDVLNVLQAIRLLGTRGHYTIDLAVGLGAGYLFDSLAGKYVEDSKRK 130

The following BLAST results are available for this feature:

BLAST of Carg04225 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949495.1	6.5e-32	98.59	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita m...	[more]
XP_022998356.1	6.5e-32	98.59	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita m...	[more]
XP_023525875.1	9.3e-31	95.77	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Cucurbita p...	[more]
XP_022153394.1	1.9e-23	81.69	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Momordica c...	[more]
XP_004152194.1	5.5e-23	81.43	PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [...	[more]

BLAST of Carg04225 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15830.1	2.2e-18	74.14	phosphatidic acid phosphatase-related / PAP2-related	[more]
AT3G15820.1	2.9e-18	70.49	phosphatidic acid phosphatase-related / PAP2-related	[more]

BLAST of Carg04225 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LVZ6\|PDCT2_ARATH	4.0e-17	74.14	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 2 OS=Arabidopsis th...	[more]
sp\|Q9LVZ7\|PDCT1_ARATH	5.2e-17	70.49	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 OS=Arabidopsis th...	[more]

BLAST of Carg04225 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTG4\|A0A0A0KTG4_CUCSA	3.6e-23	81.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006170 PE=4 SV=1	[more]
tr\|A0A1S3BY33\|A0A1S3BY33_CUCME	6.2e-23	80.28	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like OS=Cucumis m...	[more]
tr\|F6HXE1\|F6HXE1_VITVI	3.2e-19	79.31	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g06990 PE=4 SV=...	[more]
tr\|A0A1S2YMC3\|A0A1S2YMC3_CICAR	1.6e-18	77.97	phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like OS=Cicer ari...	[more]
tr\|A0A2K3JLX0\|A0A2K3JLX0_TRIPR	2.1e-18	81.36	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g048657 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04225-RA	Carg04225-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34674	FAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04225	Silver-seed gourd	carcarB139
Carg04225	Silver-seed gourd	carcarB239
Carg04225	Silver-seed gourd	carcarB240
Carg04225	Cucumber (Gy14) v2	carcgybB0215
Carg04225	Cucumber (Gy14) v2	carcgybB0218
Carg04225	Cucumber (Gy14) v1	carcgyB0235
Carg04225	Cucumber (Gy14) v1	carcgyB0238
Carg04225	Cucurbita maxima (Rimu)	carcmaB0273
Carg04225	Cucurbita maxima (Rimu)	carcmaB0276
Carg04225	Cucurbita maxima (Rimu)	carcmaB0277
Carg04225	Cucurbita maxima (Rimu)	carcmaB0278
Carg04225	Cucurbita maxima (Rimu)	carcmaB0284
Carg04225	Cucurbita moschata (Rifu)	carcmoB0280
Carg04225	Cucurbita moschata (Rifu)	carcmoB0283
Carg04225	Cucurbita moschata (Rifu)	carcmoB0284
Carg04225	Cucurbita moschata (Rifu)	carcmoB0285
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0280
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0283
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0291
Carg04225	Cucurbita pepo (Zucchini)	carcpeB0292
Carg04225	Wild cucumber (PI 183967)	carcpiB0233
Carg04225	Wild cucumber (PI 183967)	carcpiB0236
Carg04225	Cucumber (Chinese Long) v2	carcuB0226
Carg04225	Cucumber (Chinese Long) v2	carcuB0229
Carg04225	Cucumber (Chinese Long) v3	carcucB0230
Carg04225	Cucumber (Chinese Long) v3	carcucB0233
Carg04225	Bottle gourd (USVL1VR-Ls)	carlsiB176
Carg04225	Bottle gourd (USVL1VR-Ls)	carlsiB179
Carg04225	Bottle gourd (USVL1VR-Ls)	carlsiB181
Carg04225	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04225	Melon (DHL92) v3.5.1	carmeB0210
Carg04225	Melon (DHL92) v3.6.1	carmedB0203
Carg04225	Melon (DHL92) v3.6.1	carmedB0215
Carg04225	Watermelon (Charleston Gray)	carwcgB0197
Carg04225	Watermelon (Charleston Gray)	carwcgB0198
Carg04225	Watermelon (Charleston Gray)	carwcgB0199
Carg04225	Watermelon (Charleston Gray)	carwcgB0201
Carg04225	Watermelon (97103) v1	carwmB0189
Carg04225	Watermelon (97103) v1	carwmB0192
Carg04225	Watermelon (97103) v1	carwmB0193
Carg04225	Watermelon (97103) v2	carwmbB0207
Carg04225	Watermelon (97103) v2	carwmbB0204
Carg04225	Watermelon (97103) v2	carwmbB0205
Carg04225	Watermelon (97103) v2	carwmbB0209
Carg04225	Wax gourd	carwgoB0246
Carg04225	Wax gourd	carwgoB0250
Carg04225	Wax gourd	carwgoB0253