Carg04164 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04164
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_044 : 535524 .. 537117 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCCACTTTGGTAGGAGGGGCAAAAGTGTAGCCATTTAAGGGCCCTATTTCTACACCAAGGGACATTGTCCTCTTCCTACACCAAAGAGGCATTCAAAGGTTGATATCACTTCAAATCACGATTTTTAAATTTTACAGATATGTTGATATCAATAGAAATATTAATGTCTAAAATTTACAGATAGTATTGCCGAGTTAAAGATATCTTGTCTCTCCCTTCAATGGGGAGGGGTGGAAAGAAGAGACCAAAGTGGCGAACGAGCGCGTGGAATTGGTCGAACATTTTATGTTTTTTTTTTTAATCAAACTTACAAAGGTCGGACAATAATAAGCCAACTTTATTGGGTGGCCAATAATGCTAAAAATTGATAATAACTATTATTTAATATAAAAAATAATTATAAACTTAATATTTCAACTAGAATACACTTCAAACCTTATATTATAAAATTAATAATTAATATTTCAACGTTTTATTTATTTATTTTTCTATTAATACCTTATTTTATAATAATAAACTCGAGTTGAAGCTGTGTATATAAGCCAATTCCTAGATCCATAGAAATTTCACACATAAATAATTTTTTCTTCTCCTTCCCCGATCGTGTCTACAACGCCCTCCTTTCTTCATTTTCCTTAACGAGCATTTCCATGGCCACCGTTGAGGTATCTCAATAATATTCCTTTTTTACTTTCTATCGATTCGTGGGTCGACTTGGGTTGGATTGAAATTTTGAAAAACTTGGGTTGTTAGCCGATTGACATTTTTTAGTTAAGTCAAATTGATTAAGATAAAAATAGTTACAAAATTTGACTGTTAGTATCTAATGTTATGTCAGTGATGAGCTAATAATTTACTGAGACACAACCCAATTAAAAAATAAAGGTTGGAGTTGAATTGTGAACTTTTTTGGGTTGTTTGGATCATCAATTCAGTCCAAAATTTTAAGTTGATACAAAAGATTTTTCAACCCAATTCGTGTACAACTTAGCGTTTTTAGATCAAAATATGCTATCAAAAACACGTAACCTATTAAGTTTCTTATTGTTTGATCATGTTAACCTATAAAATTAAAATTTTGATGGATGGGTAATTTAATAATATATTATCATCGAATTTATTCAAATTTTTTGTAACATTTTCTTTAAGATATTCTTATGGTAATTTGCAGACTATATCTCCAAATGCGGCTCTCCTAGAAGAAACAAATGTTCTTAAAGAGACGGCTGCAAGAGAGGGAGTTGAAGAACCAGCGCCACCGGCCGTCACACCGGAAGGGAAGGCGGAGAAAGAAGAGAGTGTTGAAGTCGAAACTGTTGCCGAACCGCCCCATTCCGAAGCGACTGTTTTGAATGAAAAGGTTGAAGCAACCGAGGAAGAGGAGGAGGTAGAAGAAGAAGAAGAGGAGGTTGTGATCTTGACGGACGAGTCAAAGGCGGAGGAAGAACCCGAAGCAGTTGCAGAGGTTACGAAAGAAGAAAGCGACAGTCCCGACGAGTCATTGGCACCTGAAGCCGATGCACCAGCAACAGAGGAGGCAAAGGAAGAAGATGAGAAGAAGGAAGCCCCGGCGGAGAAGACAGAGTAA

mRNA sequence

ATGGGTCCCACTTTGACTATATCTCCAAATGCGGCTCTCCTAGAAGAAACAAATGTTCTTAAAGAGACGGCTGCAAGAGAGGGAGTTGAAGAACCAGCGCCACCGGCCGTCACACCGGAAGGGAAGGCGGAGAAAGAAGAGAGTGTTGAAGTCGAAACTGTTGCCGAACCGCCCCATTCCGAAGCGACTGTTTTGAATGAAAAGGTTGAAGCAACCGAGGAAGAGGAGGAGGTAGAAGAAGAAGAAGAGGAGGTTGTGATCTTGACGGACGAGTCAAAGGCGGAGGAAGAACCCGAAGCAGTTGCAGAGGTTACGAAAGAAGAAAGCGACAGTCCCGACGAGTCATTGGCACCTGAAGCCGATGCACCAGCAACAGAGGAGGCAAAGGAAGAAGATGAGAAGAAGGAAGCCCCGGCGGAGAAGACAGAGTAA

Coding sequence (CDS)

ATGGGTCCCACTTTGACTATATCTCCAAATGCGGCTCTCCTAGAAGAAACAAATGTTCTTAAAGAGACGGCTGCAAGAGAGGGAGTTGAAGAACCAGCGCCACCGGCCGTCACACCGGAAGGGAAGGCGGAGAAAGAAGAGAGTGTTGAAGTCGAAACTGTTGCCGAACCGCCCCATTCCGAAGCGACTGTTTTGAATGAAAAGGTTGAAGCAACCGAGGAAGAGGAGGAGGTAGAAGAAGAAGAAGAGGAGGTTGTGATCTTGACGGACGAGTCAAAGGCGGAGGAAGAACCCGAAGCAGTTGCAGAGGTTACGAAAGAAGAAAGCGACAGTCCCGACGAGTCATTGGCACCTGAAGCCGATGCACCAGCAACAGAGGAGGCAAAGGAAGAAGATGAGAAGAAGGAAGCCCCGGCGGAGAAGACAGAGTAA

Protein sequence

MGPTLTISPNAALLEETNVLKETAAREGVEEPAPPAVTPEGKAEKEESVEVETVAEPPHSEATVLNEKVEATEEEEEVEEEEEEVVILTDESKAEEEPEAVAEVTKEESDSPDESLAPEADAPATEEAKEEDEKKEAPAEKTE

Homology

[Close]

BLAST of Carg04164 vs. NCBI nr
Match: XP_022968885.1 (glutamic acid-rich protein-like [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 6  TISPNAALLEETNVLKETAAREGVEEPAPPAVTPEGKAEKEESVEVETVAEPPHSEATV 65
          TISPNAALLEETNVLKETAA+E VEEPA PAVTPE KAEKEESVEVETVAEPPHS+A V
Sbjct: 10 TISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68

[Close]

BLAST of Carg04164 vs. NCBI nr
Match: XP_023511645.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 7.0e-09
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 6  TISPNAALLEETNVLKETAAREGVEEPAPPAVTPEGKAEKEESVEVETV 55
          TISPNAALLEETNVLKETAA+E VEEPAPPAVTPE K      VEVETV
Sbjct: 4  TISPNAALLEETNVLKETAAKEEVEEPAPPAVTPEEKXXXXXXVEVETV 52

The following BLAST results are available for this feature:

BLAST of Carg04164 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968885.1	1.5e-16	89.83	glutamic acid-rich protein-like [Cucurbita maxima]	[more]
XP_023511645.1	7.0e-09	81.63	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04164 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04164 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04164 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04164-RA	Carg04164-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04164	Lsi11G013780	Bottle gourd (USVL1VR-Ls)	carlsiB174
Carg04164	MELO3C018890.2	Melon (DHL92) v3.6.1	carmedB0204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04164	Wax gourd	carwgoB0251
Carg04164	Wax gourd	carwgoB0252
Carg04164	Silver-seed gourd	carcarB232
Carg04164	Silver-seed gourd	carcarB235
Carg04164	Silver-seed gourd	carcarB242
Carg04164	Cucumber (Gy14) v2	carcgybB0217
Carg04164	Cucumber (Gy14) v1	carcgyB0243
Carg04164	Cucurbita maxima (Rimu)	carcmaB0272
Carg04164	Cucurbita maxima (Rimu)	carcmaB0279
Carg04164	Cucurbita maxima (Rimu)	carcmaB0280
Carg04164	Cucurbita moschata (Rifu)	carcmoB0276
Carg04164	Cucurbita moschata (Rifu)	carcmoB0286
Carg04164	Cucurbita moschata (Rifu)	carcmoB0287
Carg04164	Cucurbita pepo (Zucchini)	carcpeB0281
Carg04164	Cucurbita pepo (Zucchini)	carcpeB0282
Carg04164	Cucurbita pepo (Zucchini)	carcpeB0288
Carg04164	Wild cucumber (PI 183967)	carcpiB0235
Carg04164	Cucumber (Chinese Long) v2	carcuB0228
Carg04164	Cucumber (Chinese Long) v3	carcucB0232
Carg04164	Bottle gourd (USVL1VR-Ls)	carlsiB173
Carg04164	Melon (DHL92) v3.5.1	carmeB0197
Carg04164	Melon (DHL92) v3.5.1	carmeB0199
Carg04164	Melon (DHL92) v3.6.1	carmedB0202
Carg04164	Watermelon (Charleston Gray)	carwcgB0193
Carg04164	Watermelon (Charleston Gray)	carwcgB0194
Carg04164	Watermelon (97103) v1	carwmB0194
Carg04164	Watermelon (97103) v2	carwmbB0202