Carg04139 (gene) Silver-seed gourd

Overview
NameCarg04139
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane emp24 domain-containing protein
LocationCucurbita_argyrosperma_scaffold_044 : 402265 .. 405949 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTTTCTTAGTTGGAAACATTTTGATTTCTTACATTATTCGAACTCCAACTGCGCCACCGCTCGTTTTGACCCCTCATCTGATCTCAGATCAAATACCCTTTTAACTTATTACAATTCTCAGATTCTCTTTTCCCTCAATTGCCGGCAACTGTTTGTTCATCCCCTCATCCTCTAAATCTCGAGGTAAGTTACAAACCCTTTTGCTTTTTCCTTTCCTTTTTCTTATATTCGGTCATCGCAGATCGTGAAGATTTGACTTCTTTTTCATATGGGTCTTTGATTCTTTGAAGTAATGGAGCGATGGGCTATGAGATGTGTGGTGATGATGGCGTTTGCCGGTGTATTGCTGTTGAATTTGAGACAATCAGAAGGGATTAGGTTTGTGATTGACAGAGAAGAATGTTTCTCTCACAATGTTCAGTACGACGGCGATACTGTTCATGTTTCTTTTGTTGTAATCAAGACAGATTCTGGATGGCACTATGGCGAAGATGGCGTTGATCTTGTGGTATCATTTAACTTCCCTTTGCTTTGATTTCCTTCTCATTTATAGAATTTGAAACAGGGCAAGCAAGATTCATGGGGTTTTGTTTCAAGAATGTTTGGAAGTGGTTTCTTGCTGATTCTTGAGCAAGAACTTGTCTTAGTATAAGCTATGGTTTGTTTCTCAGTTGTTTTTTTGGGTGTTTTAGATGATTTGACTTGAGTTGGAGGACTATTACTTAAACTAGAATGGGGTGGGATTGATCTTTGTGTAAGAGGCTGTTAGTTTGTAGGTTGTTTCTTTGAACTCCTTATGATGAAGGTTACCTCTTAAGTTCATTGGGTGCTTGAAGACTGATACTAAAACTCGAATGCATAGAGACTTGTGTTAGTAGACGAGGTGGTTTAGTTGTTTTAAGTTATTTTTGTGGAGATGCTTTGATTTGGAGATGGAGAGACCGAGTGTAACAGTTCAAGCTCATTGCTAGTAGATATTGTCTTCTTTGGGTTTTTCCTTTTGGGATTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCATACTTTTATAAATAATGCTTTGTTTTCCTCTCTAACCGATGTACAATCTCACAATCCACCTCCCAATCGATGTGGGACCCCCCAATCCACCCCCCTTTGGGGCCTAGCGTCCTTATTGGCACACCGTCTCGTGTCCATCCAGCTTTGGGGCTTAGCCTCCTCGCTGGCACATTGCCTAGTGTTTGGCTCTGATACCATTTGTAACCGCTCAAGCCAACCGCTAGCAAATATGTCCTCTTTGGGATTTCACTTTTGGGATTCTCCTCAAGGTTTTTAAAATGCATCTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATGCTTCGTTTTTCTCCCCAACGGCGGTGGGATCTCACACAGAGACAGAGCGAGACCTTTTTACGATATCTACTTCTTAGTTCTTGGGGTGCTAGAAAAGTCTAACGCTAAAACAAGAATGGGCAGATACTTTTCTTAGTAGGGAAGATGGTTAGTTTTTAACTTAGTTCTTGGGGTGTTATACATAGGCCCTGTTTCATCCTTAGAATCGTTGATCGTAGTCATTTGTGTACGATGCGGTCAAAAAGACTTTGGACATATGCATTGAAGTTGAGGCTGTGTATAGAGACTCTAGAGACTATTCCAGTGTTTAATGGTCAACTTAGATTTTGTTTCCTCGATTTTGCTCTTCTTACGGAGTTCTTATATCGGGTTTGATTTGAGACCCTTGTGTTTATATTGTTTTTGCCGGTAGAAATTGCTGCTGATCCAATATTTTTGTTTGAATTTTAGATAAAGGGTCCTTCTGGCGAACATCTTCACGATTTCCGTGACAAAGCTAGTGAAAAGCATGAATTTGTTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCCCCATACCACGAAACCATCGACTTTGATGTGCACGTTGGTCACTTTTCATACCACGAGCAGCATGCGAAAGATGGTAAGATGCCATTCCCTGTTTTATCATGTACTGACCTTCCTTCACAAGTTAATATCAATCTCAAAACTGGTGCTTGTGCCTGCAGAGCATTTCAACCCTTTGTTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACCGATCGCCAGGCAATAGGTAATGTTGATGAACATGTCTCAAACTTGAATAATTTCCACGGCATCAAAAAGAAGTTGTGAGATATCACATCGGTTGGAGAGAAGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGCATTTTAAAACCTGGAGGGGAAGCCTAGAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGGTTTGGGCTGTTATAAATGGTATCAGAGCTAGACACTGGGTGGTGTGCCAGCGAGGACTTTGGGCCTCCAAGGGGGGTGGATTGTGAGATCTCATATCGGTTGGAGAGGAAAACGAAACATTCCTTATAAGGGTGTGGAAACCTTTTTCTAGCAGAAGTGTTTTAAAACCTTGAGGGGAAACCCAGAAAGGAAAAGCTAAAGAGGACAATATTTGCTAACCGTTAATAGGCACTATTCAAGCACGAATGATCATGATGGTTGCTGATACCCTGTTAGACTAGGCTCAATGTGGAGAGGTGCTCATTGTTTAGGCTTGGATTGGGTAAGAAGACAATAGATCCAACTCTAACCCAACGTATAGTTCGGGTTGAGTTGATTTAGTTTTTCTTTTGTGCACTCTTAGCTTAGTCCATGGCAGATGGGTGTTAAGGCAACCAGCCAAAAACCTGTGACGTGTTTCCTGTTTGATCTCGATTCTGGCTGTTGAACAGCTCTGCCGATTGAAATGACGAAAACCCGTGACGTGTTTTGTGGTATGGTTTGATTGCAGTGAATGATGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTCGGACATCCAGAGTTTAATGACAAGCATAGAAAAGCTTTGGACATCTTTTCCTATTTATGGTTCTATAATAAATTTACCCTATAGAGATTACTTGCTAATTGGTTTTTCTTCTCTCTTGTTGCCTTATGCACCTACTTTTCACCGTGCTTGCCTTTTTCGTACCCTTAAGTTATGTTCCGATTCGCAATTTACAAGTTACTTTTGTGGAAAAAACTGTTCGATAAATATTGAAGGACTTAGGTGCCAAATTTAGAAGTTACTTTTGGTATTCTCCTACTTTCTTTATGTTTATGGGTATGGGTGTTCAAATGACTCGAGAATCTGACCAACCCTGATTACCCTACCTAAATTTAACGGTTGGGTTGGGTTGGGTTAGTTCTTTTTTAGGTTTGGGCTATTGGAAAATTTGATTCGGTCTCAAGTTGTCATTTCTTTTGTTGGGTCAACTTGGCTGGTTCAAAAATAGAATTACAGTCTAACCTATGTTTAAGATTATTATGAGTCGAGTCAACTCAAAAATATAGAATTGATTGAGTTGGGCGTAAACTTCAAGGTCATCGGGTGATTTTTTCAAGTCCAACCCAATCTAACTCGGGAAATGAAATAAAAATCT

mRNA sequence

TTTTTTTTTTTCTTAGTTGGAAACATTTTGATTTCTTACATTATTCGAACTCCAACTGCGCCACCGCTCGTTTTGACCCCTCATCTGATCTCAGATCAAATACCCTTTTAACTTATTACAATTCTCAGATTCTCTTTTCCCTCAATTGCCGGCAACTGTTTGTTCATCCCCTCATCCTCTAAATCTCGAGTAATGGAGCGATGGGCTATGAGATGTGTGGTGATGATGGCGTTTGCCGGTGTATTGCTGTTGAATTTGAGACAATCAGAAGGGATTAGGTTTGTGATTGACAGAGAAGAATGTTTCTCTCACAATGTTCAGTACGACGGCGATACTGTTCATGTTTCTTTTGTTGTAATCAAGACAGATTCTGGATGGCACTATGGCGAAGATGGCGTTGATCTTGTGATAAAGGGTCCTTCTGGCGAACATCTTCACGATTTCCGTGACAAAGCTAGTGAAAAGCATGAATTTGTTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCCCCATACCACGAAACCATCGACTTTGATGTGCACGTTGGTCACTTTTCATACCACGAGCAGCATGCGAAAGATGAGCATTTCAACCCTTTGTTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACCGATCGCCAGGCAATAGTGAATGATGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTCGGACATCCAGAGTTTAATGACAAGCATAGAAAAGCTTTGGACATCTTTTCCTATTTATGGTTCTATAATAAATTTACCCTATAGAGATTACTTGCTAATTGGTTTTTCTTCTCTCTTGTTGCCTTATGCACCTACTTTTCACCGTGCTTGCCTTTTTCGTACCCTTAAGTTATGTTCCGATTCGCAATTTACAAGTTACTTTTGTGGAAAAAACTGTTCGATAAATATTGAAGGACTTAGGTGCCAAATTTAGAAGTTACTTTTGGTATTCTCCTACTTTCTTTATGTTTATGGGTATGGGTGTTCAAATGACTCGAGAATCTGACCAACCCTGATTACCCTACCTAAATTTAACGGTTGGGTTGGGTTGGGTTAGTTCTTTTTTAGGTTTGGGCTATTGGAAAATTTGATTCGGTCTCAAGTTGTCATTTCTTTTGTTGGGTCAACTTGGCTGGTTCAAAAATAGAATTACAGTCTAACCTATGTTTAAGATTATTATGAGTCGAGTCAACTCAAAAATATAGAATTGATTGAGTTGGGCGTAAACTTCAAGGTCATCGGGTGATTTTTTCAAGTCCAACCCAATCTAACTCGGGAAATGAAATAAAAATCT

Coding sequence (CDS)

ATGGAGCGATGGGCTATGAGATGTGTGGTGATGATGGCGTTTGCCGGTGTATTGCTGTTGAATTTGAGACAATCAGAAGGGATTAGGTTTGTGATTGACAGAGAAGAATGTTTCTCTCACAATGTTCAGTACGACGGCGATACTGTTCATGTTTCTTTTGTTGTAATCAAGACAGATTCTGGATGGCACTATGGCGAAGATGGCGTTGATCTTGTGATAAAGGGTCCTTCTGGCGAACATCTTCACGATTTCCGTGACAAAGCTAGTGAAAAGCATGAATTTGTTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCCCCATACCACGAAACCATCGACTTTGATGTGCACGTTGGTCACTTTTCATACCACGAGCAGCATGCGAAAGATGAGCATTTCAACCCTTTGTTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACCGATCGCCAGGCAATAGTGAATGATGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTCGGACATCCAGAGTTTAA

Protein sequence

MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFESAALVGASVLQVYLLQRLFERKLRTSRV
Homology
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BLAST of Carg04139 vs. NCBI nr
Match: XP_023554617.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 9.4e-119
Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMRCVVMMAFAGVLLLNLR+SEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS
Sbjct: 1   MERWAMRCVVMMAFAGVLLLNLRESEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
           GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]
BLAST of Carg04139 vs. NCBI nr
Match: XP_022953060.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata] >XP_022953061.1 transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata])

HSP 1 Score: 434.5 bits (1116), Expect = 2.1e-118
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS
Sbjct: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
           GWHYGEDGVDLVIKGPSGEHLHD RDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGEDGVDLVIKGPSGEHLHDIRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]
BLAST of Carg04139 vs. NCBI nr
Match: XP_022969260.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima] >XP_022969261.1 transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 5.2e-117
Identity = 210/214 (98.13%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMR VVMMAFAGVLLLNLRQSEG+RFVIDREECFSHNVQYDGDTVHVSFVVIKTDS
Sbjct: 1   MERWAMRRVVMMAFAGVLLLNLRQSEGLRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
           GWHYG+DGVDLVIKGPSGEHLHDFRDKASEKHEF+AHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGDDGVDLVIKGPSGEHLHDFRDKASEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]
BLAST of Carg04139 vs. NCBI nr
Match: XP_004144551.1 (PREDICTED: transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativus] >KGN43402.1 hypothetical protein Csa_7G031630 [Cucumis sativus])

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 197/214 (92.06%), Postives = 207/214 (96.73%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMR V+MMAF GVLLL+LR+SEGIRFVIDREECFSH+VQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGPSGEHLHDFRDK SEKHEF+AHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVN+GM KRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]
BLAST of Carg04139 vs. NCBI nr
Match: XP_022928389.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 1.4e-109
Identity = 196/214 (91.59%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMRCVVMMAF GVLLLNLR+SEGIRFVIDREECFSHNVQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRCVVMMAFVGVLLLNLRRSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGP+GEHLHD RDK SEKHEFV HNKGLHRFCFTNKSPYHETIDFD+
Sbjct: 61  AWHYGDDGVDLVIKGPNGEHLHDVRDKTSEKHEFVVHNKGLHRFCFTNKSPYHETIDFDM 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSY EQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQ IVN+ MSKRA+
Sbjct: 121 HVGHFSYQEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQEIVNEAMSKRAM 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]
BLAST of Carg04139 vs. TAIR10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein)

HSP 1 Score: 317.0 bits (811), Expect = 8.9e-87
Identity = 150/197 (76.14%), Postives = 175/197 (88.83%), Query Frame = 0 

Query: 18  LLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGEDGVDLVIKGPS 77
           LL + + + GIRFVIDREECFSH  +Y+GDT+HVSFVVIK+DS WH+ EDGVDLVI GP+
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           GE +HDFR++ S KH+FV   KG++RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFESAALVGASVLQ 197
            PL++QISKLEEALYNIQFEQHWLEAQTDRQAIVN+ MSKRAVHKA+FES AL+GAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLRTSRV 215
           VYLL+RLFERKL  SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

[Close]
BLAST of Carg04139 vs. TAIR10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-29
Identity = 71/214 (33.18%), Postives = 113/214 (52.80%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MER   +  V +    +LL ++ Q   +   ++ EEC    V Y+GDTV  +FVV+  D 
Sbjct: 1   MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDI 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
            W     G+D  +  P+G  +   +  + +K EF A   G+++FCF N     ET+ F +
Sbjct: 61  FWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYI 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGH       AKDEH +P+  +I++L EAL ++  EQ +L+A+  R    N+   KR +
Sbjct: 121 HVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
              + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 FYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

[Close]
BLAST of Carg04139 vs. Swiss-Prot
Match: sp|Q9S7M9|P24B2_ARATH (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-85
Identity = 150/197 (76.14%), Postives = 175/197 (88.83%), Query Frame = 0 

Query: 18  LLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGEDGVDLVIKGPS 77
           LL + + + GIRFVIDREECFSH  +Y+GDT+HVSFVVIK+DS WH+ EDGVDLVI GP+
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           GE +HDFR++ S KH+FV   KG++RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFESAALVGASVLQ 197
            PL++QISKLEEALYNIQFEQHWLEAQTDRQAIVN+ MSKRAVHKA+FES AL+GAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLRTSRV 215
           VYLL+RLFERKL  SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

[Close]
BLAST of Carg04139 vs. Swiss-Prot
Match: sp|Q9LIL4|P24B3_ARATH (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.2e-28
Identity = 71/214 (33.18%), Postives = 113/214 (52.80%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MER   +  V +    +LL ++ Q   +   ++ EEC    V Y+GDTV  +FVV+  D 
Sbjct: 1   MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDI 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
            W     G+D  +  P+G  +   +  + +K EF A   G+++FCF N     ET+ F +
Sbjct: 61  FWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYI 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGH       AKDEH +P+  +I++L EAL ++  EQ +L+A+  R    N+   KR +
Sbjct: 121 HVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
              + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 FYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

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BLAST of Carg04139 vs. TrEMBL
Match: tr|A0A0A0K541|A0A0A0K541_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.4e-110
Identity = 197/214 (92.06%), Postives = 207/214 (96.73%), Query Frame = 0 

Query: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60
           MERWAMR V+MMAF GVLLL+LR+SEGIRFVIDREECFSH+VQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGPSGEHLHDFRDK SEKHEF+AHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVN+GM KRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

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BLAST of Carg04139 vs. TrEMBL
Match: tr|G7K0K8|G7K0K8_MEDTR (Emp24/gp25L/p24 family protein OS=Medicago truncatula OX=3880 GN=11421057 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.0e-92
Identity = 166/207 (80.19%), Postives = 191/207 (92.27%), Query Frame = 0 

Query: 8   CVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGED 67
           CV+++   G +LLN +++EGIRFVIDR+ECFSH+V+Y+GDTVHVSFVVIK DS WHYG++
Sbjct: 8   CVMVIVLIG-MLLNWKETEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDE 67

Query: 68  GVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSY 127
           GVDLV+KGP+GE + DFRDK S+K EFVAH  G+H+FCFTNKSPYHETIDFDVHVGHFSY
Sbjct: 68  GVDLVVKGPAGEQIQDFRDKTSDKFEFVAHKPGVHKFCFTNKSPYHETIDFDVHVGHFSY 127

Query: 128 HEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFES 187
            EQHAKDEHFNPLL+QI+KLEEALYNIQFEQHWLEAQTDRQAIVNDGMS+RAVHKA+FES
Sbjct: 128 FEQHAKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAVHKAIFES 187

Query: 188 AALVGASVLQVYLLQRLFERKLRTSRV 215
           AAL+GAS LQVYLL+RLFERKL TSRV
Sbjct: 188 AALIGASALQVYLLRRLFERKLGTSRV 213

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BLAST of Carg04139 vs. TrEMBL
Match: tr|G7K0K7|G7K0K7_MEDTR (Emp24/gp25L/p24 family protein OS=Medicago truncatula OX=3880 GN=11421057 PE=2 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.0e-92
Identity = 166/207 (80.19%), Postives = 191/207 (92.27%), Query Frame = 0 

Query: 8   CVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGED 67
           CV+++   G +LLN +++EGIRFVIDR+ECFSH+V+Y+GDTVHVSFVVIK DS WHYG++
Sbjct: 9   CVMVIVLIG-MLLNWKETEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDE 68

Query: 68  GVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSY 127
           GVDLV+KGP+GE + DFRDK S+K EFVAH  G+H+FCFTNKSPYHETIDFDVHVGHFSY
Sbjct: 69  GVDLVVKGPAGEQIQDFRDKTSDKFEFVAHKPGVHKFCFTNKSPYHETIDFDVHVGHFSY 128

Query: 128 HEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFES 187
            EQHAKDEHFNPLL+QI+KLEEALYNIQFEQHWLEAQTDRQAIVNDGMS+RAVHKA+FES
Sbjct: 129 FEQHAKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAVHKAIFES 188

Query: 188 AALVGASVLQVYLLQRLFERKLRTSRV 215
           AAL+GAS LQVYLL+RLFERKL TSRV
Sbjct: 189 AALIGASALQVYLLRRLFERKLGTSRV 214

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BLAST of Carg04139 vs. TrEMBL
Match: tr|I3T587|I3T587_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.3e-92
Identity = 166/206 (80.58%), Postives = 188/206 (91.26%), Query Frame = 0 

Query: 9   VVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGEDG 68
           V++ A  GV   NL+ SEGIRFVIDR+ECFSH+V+Y+GDTVH+SFVVIK DS WHYG++G
Sbjct: 8   VLLFALIGV-FWNLKASEGIRFVIDRDECFSHDVKYEGDTVHISFVVIKADSPWHYGDEG 67

Query: 69  VDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYH 128
           VDLV+KGP+GE +HDFRDK SEK EFVAH  G+H+FCFTNKSPYHETIDFDVHVGHFSY+
Sbjct: 68  VDLVVKGPAGEQIHDFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHVGHFSYY 127

Query: 129 EQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFESA 188
           EQHAKDEHF PLL+QI+KLEEALYNIQFEQHWLEAQTDRQAIVND MS+RA+HKA+FESA
Sbjct: 128 EQHAKDEHFTPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAIHKALFESA 187

Query: 189 ALVGASVLQVYLLQRLFERKLRTSRV 215
           AL+GAS LQVYLLQRLFERKL TSRV
Sbjct: 188 ALIGASALQVYLLQRLFERKLGTSRV 212

[Close]
BLAST of Carg04139 vs. TrEMBL
Match: tr|U5DCT2|U5DCT2_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00061p00199890 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.9e-91
Identity = 161/198 (81.31%), Postives = 187/198 (94.44%), Query Frame = 0 

Query: 17  VLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDSGWHYGEDGVDLVIKGP 76
           ++L +L+ + GIRFVIDREECFSH+VQY+GDTVHVSFVVIKT++ WHYG+DGVDLV+KGP
Sbjct: 32  LVLSSLQPTLGIRFVIDREECFSHSVQYEGDTVHVSFVVIKTENAWHYGDDGVDLVVKGP 91

Query: 77  SGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEH 136
           SG+ +HD RDK SEK EFVAH+KGLHRFCFTNKSPYHETIDFD+HVGHF+Y EQHAKDEH
Sbjct: 92  SGDQIHDARDKTSEKFEFVAHHKGLHRFCFTNKSPYHETIDFDIHVGHFAYFEQHAKDEH 151

Query: 137 FNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAVHKAMFESAALVGASVL 196
           FNPLL+QI+KLEEALYN+QFEQHWLEAQT+RQA+VN+GMS+RA+HKA+FESAALVG SVL
Sbjct: 152 FNPLLEQIAKLEEALYNVQFEQHWLEAQTERQALVNEGMSRRAIHKALFESAALVGVSVL 211

Query: 197 QVYLLQRLFERKLRTSRV 215
           QVYLL+RLFERKL TSRV
Sbjct: 212 QVYLLRRLFERKLGTSRV 229

The following BLAST results are available for this feature:
BLAST of Carg04139 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554617.19.4e-11999.53transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pe... [more]
XP_022953060.12.1e-11899.53transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata]... [more]
XP_022969260.15.2e-11798.13transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima] >XP_02... [more]
XP_004144551.12.1e-11092.06PREDICTED: transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativ... [more]
XP_022928389.11.4e-10991.59transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata][more]
BLAST of Carg04139 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07680.18.9e-8776.14emp24/gp25L/p24 family/GOLD family protein[more]
AT3G22845.12.9e-2933.18emp24/gp25L/p24 family/GOLD family protein[more]
BLAST of Carg04139 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S7M9|P24B2_ARATH1.6e-8576.14Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana O... [more]
sp|Q9LIL4|P24B3_ARATH5.2e-2833.18Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana O... [more]
BLAST of Carg04139 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K541|A0A0A0K541_CUCSA1.4e-11092.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 SV=1[more]
tr|G7K0K8|G7K0K8_MEDTR1.0e-9280.19Emp24/gp25L/p24 family protein OS=Medicago truncatula OX=3880 GN=11421057 PE=3 S... [more]
tr|G7K0K7|G7K0K7_MEDTR1.0e-9280.19Emp24/gp25L/p24 family protein OS=Medicago truncatula OX=3880 GN=11421057 PE=2 S... [more]
tr|I3T587|I3T587_LOTJA1.3e-9280.58Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|U5DCT2|U5DCT2_AMBTC1.9e-9181.31Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00061p00199890... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04139-RACarg04139-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 27..206
e-value: 4.2E-38
score: 142.6
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 34..206
e-value: 2.8E-31
score: 108.8
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 35..122
score: 14.652
NoneNo IPR availablePANTHERPTHR22811:SF50TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN P24BETA2coord: 13..211
IPR015720TMP21-relatedPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 13..211

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04139Cla015697Watermelon (97103) v1carwmB0194
Carg04139Csa7G031630Cucumber (Chinese Long) v2carcuB0228
Carg04139ClCG02G002940Watermelon (Charleston Gray)carwcgB0194
Carg04139CSPI07G02610Wild cucumber (PI 183967)carcpiB0235
Carg04139Cucsa.100220Cucumber (Gy14) v1carcgyB0237
Carg04139CmaCh11G013090Cucurbita maxima (Rimu)carcmaB0269
Carg04139CmoCh19G008630Cucurbita moschata (Rifu)carcmoB0286
Carg04139CmoCh11G018120Cucurbita moschata (Rifu)carcmoB0278
Carg04139Lsi11G013390Bottle gourd (USVL1VR-Ls)carlsiB174
Carg04139Cp4.1LG04g04150Cucurbita pepo (Zucchini)carcpeB0289
Carg04139Cp4.1LG15g06750Cucurbita pepo (Zucchini)carcpeB0281
Carg04139CsGy7G002270Cucumber (Gy14) v2carcgybB0217
Carg04139MELO3C028686.2Melon (DHL92) v3.6.1carmedB0204
Carg04139CsaV3_7G002450Cucumber (Chinese Long) v3carcucB0232
Carg04139Cla97C02G029450Watermelon (97103) v2carwmbB0202
Carg04139Bhi05G001305Wax gourdcarwgoB0251
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg04139Carg18091Silver-seed gourdcarcarB241
The following block(s) are covering this gene:
GeneOrganismBlock
Carg04139Silver-seed gourdcarcarB232
Carg04139Silver-seed gourdcarcarB235
Carg04139Silver-seed gourdcarcarB242
Carg04139Cucumber (Gy14) v2carcgybB0216
Carg04139Cucumber (Gy14) v1carcgyB0240
Carg04139Cucurbita maxima (Rimu)carcmaB0272
Carg04139Cucurbita maxima (Rimu)carcmaB0279
Carg04139Cucurbita maxima (Rimu)carcmaB0280
Carg04139Cucurbita moschata (Rifu)carcmoB0276
Carg04139Cucurbita moschata (Rifu)carcmoB0287
Carg04139Cucurbita pepo (Zucchini)carcpeB0282
Carg04139Cucurbita pepo (Zucchini)carcpeB0288
Carg04139Wild cucumber (PI 183967)carcpiB0234
Carg04139Cucumber (Chinese Long) v2carcuB0227
Carg04139Cucumber (Chinese Long) v3carcucB0231
Carg04139Bottle gourd (USVL1VR-Ls)carlsiB173
Carg04139Melon (DHL92) v3.5.1carmeB0197
Carg04139Melon (DHL92) v3.5.1carmeB0199
Carg04139Melon (DHL92) v3.6.1carmedB0202
Carg04139Wax gourdcarwgoB0252