Carg04112 (gene) Silver-seed gourd

NameCarg04112
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_044 : 234038 .. 235789 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAGTATAATGCAAGGTGGTTGTTACATGATTTCTTTTTCGTTCCAAAAGTACCGTATTATACGTAGTAGAACACATAAGGTACAAACCCGGTTCGGGATTGCTGCGTATTTCTGTAGAAACATATATAGTAAGATGAAAAATTATGTGGCCTTTACGCCCAGACTGCCAACATTGTGCAGTTTAACTCTGATATGATAATCTCGAGGTTTAACATGTCGGTATCCTTATGTTCAAGTTTCTAGTTTCGATTTAGATTCCTTAATTACATAACAATTTCAAAATTGTTTTCCTTCAAATGTCTGCCCAAACTGCCAGTTTGCAGGTGCAACGCTGTAGGAAGTAAGTGTTCTTCCAATGCTAGAGGTAACTTCGAACGAGAGAGGTTGCCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTTGCCAATGGTATCCATCCTGTTCTTGATCCTTTTACCTTCACTGCCACTAATTCACCATCCATTCCAACATTGGTAATCAGAACTTGAAAGAAACGAGAATTTCCACTAACCGTGAACCTCAATCCACCGCTTCGATCACACCTCGTCCTACACACATTCAAAACAAGTTTTTTCCCCTTAGCTGAGGATGACAAATCGTTTGAATCTATATGCATTTAGATTGATTCTACCTCCTATATTGAACTGGTACAATATCTGCTTTTTTCTCTGATATTTCAGCAAATGCTGCCTCTGACATCTCAAAATGTTCTTTAGGAAAATTACACCAACCACCATAATCAGAAGATAGGCCGTAATTTGGAGGACAGAAGTCGGTGGCTGTTAGAACAACGGTCGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGGTACTCCCTCTATTAAACAACATGCTACTCAATCCTGCGCTATATTTTCCATAGCTAATTTTATGCAGATCTCCATATCCACACGCACCTTCTGCAACATTAGTAGGAAAAAAGAGCATTTGAAATACTAATTTCCCTCCCTTTAGGTTACAATATTCCAGACATGACTATCTTGAAAGTGATTATAAAATGGTCAAAAGCACTTTTTTCACTCATAATTCATCTAATATTTGGTTTTTATAGGCTTTTGTATGCAATTTTCAGACTATCAAAATTAAGCTTCGGATTAATAGAAGCATGTTTCTAAATGATTTTGAACGTGACAAAAATGTTTTTAACTATTTCAAAATCACTCACTAACATGTTCTAAACATTGATTATCGAAGTTATGATTTCCAGTTTCCACCTTTTGAAGGTAACCCTTGAACACTCATATAAGAGCTTTTGCGAACCCAGAAAAGCACCATCACCATGTTTAAACACTAATATAATCTTATGAGCTTTCAGACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAAAGAAGAATATAAGGTCTTGAAGAAGCCTGTGCAGTATGTATACCTAAAATGAGGTATATTTCCTTTTGAATTTTTTGTTCCTCCTTTAAGAAAAG

mRNA sequence

ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAAAGAAGAATATAAGGTCTTGAAGAAGCCTGTGCAGTATGTATACCTAAAATGAGGTATATTTCCTTTTGAATTTTTTGTTCCTCCTTTAAGAAAAG

Coding sequence (CDS)

ATGCAGATAAGAGCTGATCATCTTGCAACATACTTCAGCCACTCTGTTGCAAGCATGAGAAGTTCATCTAAGTCTACTCAAGACAGAAATAGAAGGGAAAAATCTGAAACGAAGGAGAAGAGTACCTGTAACAATGGACCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCATCCATAGCCGCAAAGAGATTGGGTGTTTGCAGAAGAACCAAGTAGACTACTATAGCTACAAAGGCAGCCATTAA

Protein sequence

MQIRADHLATYFSHSVASMRSSSKSTQDRNRREKSETKEKSTCNNGPICFFGVCCSSRFPLFIHSRKEIGCLQKNQVDYYSYKGSH
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04112-RACarg04112-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..42

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04112CmaCh19G008120Cucurbita maxima (Rimu)carcmaB0279
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg04112Watermelon (97103) v2carwmbB0202
Carg04112Wax gourdcarwgoB0251
Carg04112Silver-seed gourdcarcarB232
Carg04112Silver-seed gourdcarcarB237
Carg04112Silver-seed gourdcarcarB242
Carg04112Cucumber (Gy14) v2carcgybB0217
Carg04112Cucumber (Gy14) v2carcgybB0216
Carg04112Cucumber (Gy14) v1carcgyB0237
Carg04112Cucumber (Gy14) v1carcgyB0240
Carg04112Cucurbita maxima (Rimu)carcmaB0272
Carg04112Cucurbita maxima (Rimu)carcmaB0280
Carg04112Cucurbita maxima (Rimu)carcmaB0281
Carg04112Cucurbita moschata (Rifu)carcmoB0276
Carg04112Cucurbita moschata (Rifu)carcmoB0278
Carg04112Cucurbita moschata (Rifu)carcmoB0286
Carg04112Cucurbita moschata (Rifu)carcmoB0287
Carg04112Cucurbita moschata (Rifu)carcmoB0288
Carg04112Cucurbita pepo (Zucchini)carcpeB0281
Carg04112Cucurbita pepo (Zucchini)carcpeB0282
Carg04112Cucurbita pepo (Zucchini)carcpeB0288
Carg04112Wild cucumber (PI 183967)carcpiB0234
Carg04112Wild cucumber (PI 183967)carcpiB0235
Carg04112Cucumber (Chinese Long) v2carcuB0227
Carg04112Cucumber (Chinese Long) v2carcuB0228
Carg04112Cucumber (Chinese Long) v3carcucB0231
Carg04112Cucumber (Chinese Long) v3carcucB0232
Carg04112Bottle gourd (USVL1VR-Ls)carlsiB173
Carg04112Bottle gourd (USVL1VR-Ls)carlsiB174
Carg04112Melon (DHL92) v3.5.1carmeB0197
Carg04112Melon (DHL92) v3.5.1carmeB0200
Carg04112Melon (DHL92) v3.6.1carmedB0201
Carg04112Melon (DHL92) v3.6.1carmedB0205
Carg04112Watermelon (Charleston Gray)carwcgB0194
Carg04112Watermelon (Charleston Gray)carwcgB0195
Carg04112Watermelon (97103) v1carwmB0194