Carg03968 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03968
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cucurbita_argyrosperma_scaffold_011 : 1087701 .. 1093623 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGCTTGCCGCCTTCGTTAACCGTAAAACCCGAGCTTTCATGACCTTTCGGCACCAATAAGCCATCAAACCGACGATGGAAGAAGCCGGCGCCAAATCTAGGAAGGGCGTCTCCTGCCTGTGCGGCATATGCAATAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGGTTTAATTTGCTTCCCGTCTTGTTTTTGTTCTGATTTCTTCTTATTTGTTTCTCTGTTAGCTATCGCCATACTTGCGTTAACGATCATCGGAAACCATTGAAGAATCAGGAACCCTGATTTCCGTTCATGTAATTAATTATACAATGTGGTCTGAATGTTATTTTGGACAGTTTGTTGTATTGTAATTCTAATAGAATGAACAGATTAACTATAGCGTTATGAAAAATCTTGCCATCAAACTGAAGGATTTAAGCCGATGATTTTCATATATCAATACTTTTAACTCTCCGCTCATTTGTAGGCTTGAAATTCTGCACGAGGTCGAACTAGTGATTATCGATATTAATTAGGGAGGAGATAACTCTACAGGGTTTCGAACACATGATCTTCTACTCGCATACCATGTTAAATCTTTATTGAACTGAAAAGCTTAAGTTGATGGGTTTCGATATCTGTGAGATTCCACGTCGATTGGGGAGGAGAACGAAACATTTTTCATAATGGTGTGGAAACTTTTTCCTAGTAGATGGGTTTTAAAAACCTTGAGAGGAAGTCCGAAAGGGAAAGCCTAAAGAGGACAATTTCTGCTAGCGGTGGGCTTGGGCTGTTATAATATCCTACGTCACCATGTTTATTGCTTTTACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCATTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGGTGGACACAAATTCTACTTAGTTCTAAATCGTTCTTGATCTTCAAGATTATGTGAAAGGCCGTTGTTTCTGTTATTTATTGTCGCTATGTGTGCTTGCTTGTGGGAGTCTCTTTCTTTTTTGATGTGCTGTCACGCTCCCTTCCCATCTATGGACGAAAGGGCAAGTCCTTGACTATATTCCCGATCGATCGGGCAAGCGGCTTGGCTTGATAAAAAAGTTAACTCCGACAATTTTCTTTTTATATTCTCTCATACAGGAGAGATAAATTTTGTAGATGTTTTTTGTACTATTTTTGGTTTAATAGTACCCGTTCCTATTATATTTACATTTACTATTGCCCATTTATGCAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCGCTTGAAACTGTGAAAAGAAATGAAATTCAGGTGAGGTCTTTCTTGTCTTGCTTTAGATATATTTTCCTGTTTCCTTATTTCTTGATTTCTTTATGATTCTCTCTACGAGCTATAATATTATGACAGAAACAAATAATTTGTATGGGGATTGTCCATTCTCACTTTAATTATTCGTTTTTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGTGTGAAACAACTACTCCTGCTATGACTTCACAGTATATTTTCTGGCATTGTCTACATTGTGCATAGTTTCTTCCATGGGTATAGCAAATGTCATTTGAGGCTTACTTTTTATTCAACGAAATTACGGTATCTAAGTTAGGATATGATGTTGATACCGCCCCAGGAAAAGAAAATATAAACAAAATGGCCGGGCTATGGTGGTATTATAATTCTGAGCTGTGTGTGCCTCCTCATGGATCGAGTGCTTTTATAATTTGTGTTACGCTGTTAGTTAATTGCAGGCCACCCTGTCTTGACATAGGTTTTGTGTGTTTCTATTAAGGCTTATGGCCTCCTTTCTCATGTTTGATTTACTTGTGAACTATCACTAGGGGTTTAGGTGGCTTAGTTGTAAACGGAATTGATGGTTCGATTGAATTGTCAATTTGGTTTGTGTAACGGCCAATGTGGGACATCACAGTTTGGCAGTTTGATGATTCATTGTTGAGTCTTTGGGTTGGGTGGTGTAACAACCCAAGGCCACCTCTAACAAATATTGATCGCTTTGGTCCCTTACGTATCGTTGTCCACCTCACGGTTTTAAAATGTGTATGTTAGGGAGAGGTTTCCACACTCTTATAAGGAATGCTTCGTTCCCCTCTCCAACCGATGTCAGATCTTACAAGTGGGGTTGAACCATGAAAAGTAGGTAAGGGGACTCATGAAGGGCTCGGCTGCTAGGCTATTGATGTTTTATCATTCAATTGGTCAGTTGAGACCCTTAAATTGAAACTAACCAATTTCCGTCGGCTTTTACAATGTTGTAAACCAAAAGTGACCAACATACACCAAACCAACCTAAGGTTGGCTTTATTGGTATCGTTGTTTTAGTTTGCACCTTTAATTATCATGCAATCATTTTCTCATTCTTTTGTGGCAAGCACGGGAAGATACGTAGTACTAAGATGTCGAGACGTAAAACCAGCCATAGCAAATCAATTAGATAGACATTACTTCTTCGTGTCTGCTCATTTCATGTATAAATGTGATGGGTACTATGAATTAAGATGTGTATTCAGCATTATTTCATTGAAGTAATAGATCTTTTTCTCCTGAAGGCTCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTATTGAATATATTACGAGGCGACATAGCAAGGTATTCTAATATTACGAGATCACTTTCGATCTCTTTCATTTTGAACTGAGGTTAGACTGAACCAATGCTTTGAGTTTATAGATTGAGTCGATGTACTGCTATAATAACCGGCGAAGATGGACCGATTCCGAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATATATCCTTTTATTGTAGTCTCATACTTCTTAAGCAAATGTTTGTTTCTTGTGCTAGTTGTAAAACCTTAACCAGATATTCACGTATGCTTATTTTAAGAAGCTCGACTACTTCTCCACCGAGTGTAAGCGTTTCTCATTTTAGCTGTTCTTTGTTTTCTTATTTTCCTCACATTTCTGTGTCTTCTAAATGATAATAAAGTTCATTAGATTCAATTTTGTTGCCATAAACTTGATGTCCTAATGGGTTTAGTCAACTATGAAATTGAATGGTTGAGCAACAAATGATCTATCAAAAATACATTATCAAGCATGAATTCATCCATTTTAGGTTCCAAAACTAGTTTTGTCTATGATTGACTTTTGTGAGACCCCACATTTGTTGAAGAGGGGAACGAAGCATTCCTATAAGAGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAACCATGAGGTTGACCCAATACGTAATGGGCCAAAGCGGACAATATCTACTAGTGGTAGGTTTGGGCTGTTACAACTTTTCATTGTTCTAAAGCAATCATTTTCTTCCGTGGTTCTATCGTCTGAGGTGACATGTTGATGTTATAATAACTTATGCTTTTTCAATGAAATGTTCGACGAATTCTCGTGTCTTAGCCTCACAGTCTTGCCTAGAAAATTAGACTTTACTTTGTTCATCTCCACATTCCTTTGAATCTTTCTGTTGAAATTGTAGGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGATTTGGAACGAATCAGGTTTCAATTCACCTCGTCATTGCTTGACAAATGTTTATCCTTCTCATTGCTGACAATGATTGTGTTCCCTGTGATTTGCTCTCACTAGTTATGAACACTGTTGCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACCTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGGTGTGCTTTGCTCTCATTTTACCTGATAACAAAAAATTGAGCAGGGGATTATTCACTTAATAGCTATAATGCATTCCTAATAGATATACTGAACTTGGTTTGAGCCAATATTATCATCTGAATCTGGTCATACAGCTGCACCTCCTCATTTGTCAGCTGTATGTAGATTGTTTACTATTCGCTTGATCTAGAAGTATTTGCGATCTGCTTTCGATTACGTTTTCTGTTCCTCACCATACCTTCTGAAACTCATTGTAATAGTCCGAACTCACTGTTAGCAGATATTGTCCTCTCTAGGTTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAACGTGTATGTTAGGGAAAGGATTCCACACCCTTATAGAGAATGCTTCGTTGCCCTCTCCAATCGATATGGGATCTCACAATCCACCCCCCTTCGGGGCCAGCTTTCTTGTGGGCACTTGTTCCCCTCTCCAATCGATGTGGGATCTCACAATCTACCTCCCTTCGGGGCTCGACGTCCTTGCTGGCACACCGCCCAGTGTCCACCCCATTCGGAGCTCAGCATCCTCGCTGGCACACTACCCGATATCTGGCTTTGATACCATTTGTAACAGCACAAGCCCACCGCTAGCAAATATTATTCTCTTTGGGCTTTCCCTTTTGGACTTCCCCTCAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCCACACCTTATAAAGAATACTTCGTCCCCCTTTCCAACCGATGTAGGATCTCACACTTATCAATTGAATTTTGTTTACAAGAAACTGTAACTACTCTATGTGATATATGCAAGATCCCACCTCGGTTGGAGAGGGGAACAAAACATTCCTTATAAGGGTGTCGAAACTTCTATCTAGCAGATGCGTTTTAAAACCTTGAGAGAAAGCCCGAAAGGGAAAGCCTAAAAAGGACAATATTTGCTAACGGTGAGCTTGAGTTGCTACAATATATGTCCCCAACCCCCTCATTTTTCTGGTAGATCGGGTCCATTTTACCATTTTACCATATAGTCACACGTTGTGTGGGACTAAAACATTGCTATTGGTGAATTAAAATTGTGTTCAAATAATGAACCATTCCCGTAGATTTCTACCCCAGAGTAAACCTTTTACCAACTTACTTTCATACAATTGGAGATCTGAGCATCTGTTATCTTTATTTTACATAATGCAGAAATGGTGTAAAGCATGTGTTCTGCTCGAGGGCCTTAACCGAGGTTTGCCGAAGATGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTTGACTTCTGAAGCTTTTCTGCATTCTTAGCTGTAGCAATGGTGATCAAAATATCAGATGAAAGCCGAGGATTTATCGAACAAGAATCGGCATGCGTTAACGACATTCTTTGTTGCTTCGGTTCGATGATCTCAGCTTCTGTTGAAGATAAGAGAGATGAAAATGGAGAAAAAGAAACAGATCAGCAGACCTAATACAAACACTGAAGTTCATTGAGAAACTCTAGGGATCTTATGTAGCAGTTTTTTTCCACATAAATCTTAATATATTCTCGTCATTCTCATCATTCTCGTCATTATAAAATCTATTTAAGAAAAGTTTTCACACCCTTATAAGGAATGTTTCGATCTTCTCTCTAATCGACGCGGAATTTTGCAGTTCACCTCATTGGGAACCCACCACCTCACGATTTTAAAAGGTGTCCGGAGCAGTTTTCACATCTTTTAAAGAAATTTTGGGATGTTTATA

mRNA sequence

AATTGGCTTGCCGCCTTCGTTAACCGTAAAACCCGAGCTTTCATGACCTTTCGGCACCAATAAGCCATCAAACCGACGATGGAAGAAGCCGGCGCCAAATCTAGGAAGGGCGTCTCCTGCCTGTGCGGCATATGCAATAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCATTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCGCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGCTCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTATTGAATATATTACGAGGCGACATAGCAAGATTGAGTCGATGTACTGCTATAATAACCGGCGAAGATGGACCGATTCCGAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATATATCCTTTTATTGTAGTCTCATACTTCTTAAGCAAATGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGATTTGGAACGAATCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACCTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAAGCATGTGTTCTGCTCGAGGGCCTTAACCGAGGTTTGCCGAAGATGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTTGACTTCTGAAGCTTTTCTGCATTCTTAGCTGTAGCAATGGTGATCAAAATATCAGATGAAAGCCGAGGATTTATCGAACAAGAATCGGCATGCGTTAACGACATTCTTTGTTGCTTCGGTTCGATGATCTCAGCTTCTGTTGAAGATAAGAGAGATGAAAATGGAGAAAAAGAAACAGATCAGCAGACCTAATACAAACACTGAAGTTCATTGAGAAACTCTAGGGATCTTATGTAGCAGTTTTTTTCCACATAAATCTTAATATATTCTCGTCATTCTCATCATTCTCGTCATTATAAAATCTATTTAAGAAAAGTTTTCACACCCTTATAAGGAATGTTTCGATCTTCTCTCTAATCGACGCGGAATTTTGCAGTTCACCTCATTGGGAACCCACCACCTCACGATTTTAAAAGGTGTCCGGAGCAGTTTTCACATCTTTTAAAGAAATTTTGGGATGTTTATA

Coding sequence (CDS)

ATGGAAGAAGCCGGCGCCAAATCTAGGAAGGGCGTCTCCTGCCTGTGCGGCATATGCAATAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCATTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCGCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGCTCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTATTGAATATATTACGAGGCGACATAGCAAGATTGAGTCGATGTACTGCTATAATAACCGGCGAAGATGGACCGATTCCGAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATATATCCTTTTATTGTAGTCTCATACTTCTTAAGCAAATGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGATTTGGAACGAATCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACCTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAAGCATGTGTTCTGCTCGAGGGCCTTAACCGAGGTTTGCCGAAGATGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTTGACTTCTGA

Protein sequence

MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFIVVSYFLSKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF

Homology

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BLAST of Carg03968 vs. NCBI nr
Match: XP_022951723.1 (cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita moschata])

HSP 1 Score: 709.1 bits (1829), Expect = 7.4e-201
Identity = 348/360 (96.67%), Postives = 354/360 (98.33%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEAGAKSR+GVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP
Sbjct: 1   MEEAGAKSRRGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360

[Close]

BLAST of Carg03968 vs. NCBI nr
Match: XP_023538431.1 (cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita pepo subsp. pepo] >XP_023538432.1 cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 706.4 bits (1822), Expect = 4.8e-200
Identity = 347/360 (96.39%), Postives = 352/360 (97.78%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEAGAK RKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP
Sbjct: 1   MEEAGAKPRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLDNE EKREMKGRSSDGQTRSIESKQCGTLDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNEAEKREMKGRSSDGQTRSIESKQCGTLDF 360

[Close]

BLAST of Carg03968 vs. NCBI nr
Match: XP_023002400.1 (cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita maxima])

HSP 1 Score: 703.0 bits (1813), Expect = 5.3e-199
Identity = 346/360 (96.11%), Postives = 352/360 (97.78%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEAGAK RKGVSCLC IC+NRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP
Sbjct: 1   MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360

[Close]

BLAST of Carg03968 vs. NCBI nr
Match: XP_022144278.1 (cytoplasmic tRNA 2-thiolation protein 1 [Momordica charantia])

HSP 1 Score: 668.3 bits (1723), Expect = 1.5e-188
Identity = 332/360 (92.22%), Postives = 343/360 (95.28%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEE GA+++KGVS LC ICNNRK +LKRPKTLQQICRECFYEVFEEEIHQVIVKNHLF+P
Sbjct: 1   MEEGGARAKKGVSSLCCICNNRKPSLKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFKP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTK PEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKXPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLDNE EKREMKG  S G  +SIESKQCGTLDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNE-EKREMKG--SGGHEKSIESKQCGTLDF 357

[Close]

BLAST of Carg03968 vs. NCBI nr
Match: XP_011649473.1 (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus] >KGN62283.1 hypothetical protein Csa_2G348210 [Cucumis sativus])

HSP 1 Score: 653.7 bits (1685), Expect = 3.7e-184
Identity = 327/360 (90.83%), Postives = 340/360 (94.44%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEA  K ++ VS LC +CNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAAPKPKRAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLD+E  KRE  G S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSE-GKRETIG-SNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of Carg03968 vs. TAIR10
Match: AT2G44270.2 (repressor of lrx1)

HSP 1 Score: 577.4 bits (1487), Expect = 6.1e-165
Identity = 290/365 (79.45%), Postives = 315/365 (86.30%), Query Frame = 0


Query: 6   AKSRKGV-SCLCGICNNRKAALKRPKTLQQ----------ICRECFYEVFEEEIHQVIVK 65
           AK++K V S LC +CN R+  LKRPKTLQQ            RECFYEVFEEEIHQVIV+
Sbjct: 3   AKNKKAVASRLCCLCNLRRPVLKRPKTLQQQKLGTHFYTVSVRECFYEVFEEEIHQVIVQ 62

Query: 66  NHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETV 125
           N LF+ GER+A+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLS+DEGITGYRDDSLETV
Sbjct: 63  NRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETV 122

Query: 126 KRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKL 185
           KRNE+QYGLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKV+KL
Sbjct: 123 KRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKL 182

Query: 186 ATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFIV 245
            TGHNADD+AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPF +TY        F  
Sbjct: 183 VTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFNFTYAY------FKK 242

Query: 246 VSYFLSKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCER 305
           + YF ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRI+T+TKMPEQGTCER
Sbjct: 243 LDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGTCER 302

Query: 306 CGYISSQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQC 360
           CGYISSQKWCKACVLLEGLNRGLPKMGIGR RG++ +  K   K  S     +SIESKQC
Sbjct: 303 CGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGS---VAKSIESKQC 358

[Close]

BLAST of Carg03968 vs. TAIR10
Match: AT1G76170.1 (2-thiocytidine tRNA biosynthesis protein, TtcA)

HSP 1 Score: 559.7 bits (1441), Expect = 1.3e-159
Identity = 274/323 (84.83%), Postives = 299/323 (92.57%), Query Frame = 0


Query: 38  ECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLL 97
           ECFYEVFEEEIHQVIV N LF+ GER+A+GASGGKDS+VLAYVLSELNRRH+YGLDLFLL
Sbjct: 14  ECFYEVFEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSELNRRHSYGLDLFLL 73

Query: 98  SVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF 157
           S+DEGITGYRDDSLETVKRNE+QYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF
Sbjct: 74  SIDEGITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF 133

Query: 158 RRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCK 217
           RRQALDRGAALLKVDKL TGHNADD+AETV+LNILRGDIARLSRCT+I TGEDGPIPRCK
Sbjct: 134 RRQALDRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLSRCTSITTGEDGPIPRCK 193

Query: 218 PFKYTYEKEIVIYP-FIVVSYFLSKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE 277
           PFKYTYEKEIV+Y  F  + YF ++CIYSPNAYRGFA EFI DLER+RPRAILDIIKSGE
Sbjct: 194 PFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFACEFINDLERLRPRAILDIIKSGE 253

Query: 278 DFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKRE 337
           DFRI+T+TKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGR RG  N  + ++
Sbjct: 254 DFRIATTTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGNVN-GDYKD 313

Query: 338 MKGRSSDGQTRSIESKQCGTLDF 360
           +K RS+    ++IESKQCG+LDF
Sbjct: 314 IKARST---AKTIESKQCGSLDF 332

[Close]

BLAST of Carg03968 vs. Swiss-Prot
Match: sp|O64862|CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana OX=3702 GN=NCS6 PE=2 SV=2)

HSP 1 Score: 609.4 bits (1570), Expect = 2.6e-173
Identity = 300/356 (84.27%), Postives = 325/356 (91.29%), Query Frame = 0


Query: 6   AKSRKGV-SCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERI 65
           AK++K V S LC +CN R+  LKRPKTLQQICRECFYEVFEEEIHQVIV+N LF+ GER+
Sbjct: 3   AKNKKAVASRLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERV 62

Query: 66  AVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLP 125
           A+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLS+DEGITGYRDDSLETVKRNE+QYGLP
Sbjct: 63  AIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETVKRNEVQYGLP 122

Query: 126 LQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMA 185
           L+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKV+KL TGHNADD+A
Sbjct: 123 LKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADDIA 182

Query: 186 ETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFLSKCI 245
           ETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF ++CI
Sbjct: 183 ETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI 242

Query: 246 YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKW 305
           YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRI+T+TKMPEQGTCERCGYISSQKW
Sbjct: 243 YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGTCERCGYISSQKW 302

Query: 306 CKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           CKACVLLEGLNRGLPKMGIGR RG++ +  K   K  S     +SIESKQCG+LDF
Sbjct: 303 CKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGS---VAKSIESKQCGSLDF 355

[Close]

BLAST of Carg03968 vs. Swiss-Prot
Match: sp|Q6Z6G6|CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NCS6 PE=2 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 6.7e-161
Identity = 279/348 (80.17%), Postives = 307/348 (88.22%), Query Frame = 0


Query: 13  SCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGK 72
           S LC  C  RKAALKRPKTL+QICRECFY VFE+EIHQ IV N+LF+PG+R+A+GASGGK
Sbjct: 17  SRLCTRCGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIGASGGK 76

Query: 73  DSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKD 132
           DSTVLAYVLSELNRRH Y LDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPL+IVSYKD
Sbjct: 77  DSTVLAYVLSELNRRHKYCLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKIVSYKD 136

Query: 133 LYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNIL 192
           LYGWTMD+IVK IGLKNNCTFCGVFRRQALDRGAALLKVDK+ TGHNADD+AETVLLNIL
Sbjct: 137 LYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNADDIAETVLLNIL 196

Query: 193 RGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFLSKCIYSPNAYRG 252
           RGDIARLSRCT I TGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF ++CIYSPNAYRG
Sbjct: 197 RGDIARLSRCTFITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRG 256

Query: 253 FAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLE 312
           FAREFIKDLER+RPRAILDIIKSGE+FRIST+T+MPEQGTCERCGYISSQK CKACVLL+
Sbjct: 257 FAREFIKDLERMRPRAILDIIKSGENFRISTTTRMPEQGTCERCGYISSQKLCKACVLLD 316

Query: 313 GLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           GLNRGLPK+GIGR++G+       E +   S+    S++ K  G  DF
Sbjct: 317 GLNRGLPKLGIGRTKGIAGGDGDCEQQATRSERNRSSLQGKH-GNFDF 363

[Close]

BLAST of Carg03968 vs. Swiss-Prot
Match: sp|A8JF71|CTU1_CHLRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii OX=3055 GN=NCS6 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 6.5e-132
Identity = 223/320 (69.69%), Postives = 264/320 (82.50%), Query Frame = 0


Query: 15  LCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDS 74
           LC  CN  +A L RPKT +Q+CRECF+  FEEE+HQ IV N LF+ GER+AV ASGGKDS
Sbjct: 5   LCVRCNTSRAMLNRPKTQEQVCRECFFTAFEEEVHQTIVDNKLFKHGERLAVAASGGKDS 64

Query: 75  TVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLY 134
           TVLA+++S LN R+NYGLDLFLLS+DEGITGYRDDSLETVKRNE QYG+PL++VSYK+LY
Sbjct: 65  TVLAHIMSTLNARYNYGLDLFLLSIDEGITGYRDDSLETVKRNEQQYGIPLKVVSYKELY 124

Query: 135 GWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRG 194
           GWTMDEIV  IG KNNCTFCGVFRRQALDRGA L+  +K+ATGHNADD+AETVLLNILRG
Sbjct: 125 GWTMDEIVSQIGTKNNCTFCGVFRRQALDRGAVLMGANKIATGHNADDVAETVLLNILRG 184

Query: 195 DIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFI-VVSYFLSKCIYSPNAYRGFA 254
           D+ RL RC  IITGED  +PR KPFKY YEKEIV+Y +   + YF ++CIY+P A RGFA
Sbjct: 185 DVPRLGRCANIITGEDSSLPRVKPFKYAYEKEIVLYAYYKKLDYFSTECIYAPFAARGFA 244

Query: 255 REFIKDLERIRPRAILDIIKSGEDFRISTST--KMPEQGTCERCGYISSQKWCKACVLLE 314
           REFIKDLE  RP AI+D+I+S EDF  + ++  K+P+  TCERCGYISSQ  CKACVLLE
Sbjct: 245 REFIKDLEAARPLAIIDVIRSAEDFVFAAASDEKLPQPRTCERCGYISSQPVCKACVLLE 304

Query: 315 GLNRGLPKMGIGRSRGLDNE 332
           GLNRG+P++G+ R+RG   E
Sbjct: 305 GLNRGMPRLGVSRTRGRRGE 324

[Close]

BLAST of Carg03968 vs. Swiss-Prot
Match: sp|Q5FW05|CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis OX=8364 GN=ctu1 PE=2 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 1.0e-129
Identity = 218/336 (64.88%), Postives = 265/336 (78.87%), Query Frame = 0


Query: 16  CGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDST 75
           C  C  R+A L+RPKT   +C++CF+  FEEEIH  IV   LF PGE++ +GASGGKDST
Sbjct: 5   CSSCEERRAVLRRPKTGHSLCKDCFFHAFEEEIHHTIVSAKLFNPGEKVGIGASGGKDST 64

Query: 76  VLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYG 135
           VLA+VL  LN R+ YGLDL L+SVDEGI+GYRDDSLETVKRN+ QY LPL+IVSY++LYG
Sbjct: 65  VLAHVLKVLNERYAYGLDLILVSVDEGISGYRDDSLETVKRNQQQYELPLKIVSYQELYG 124

Query: 136 WTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGD 195
           WTMD+IVK +GLKNNCTFCGVFRRQALDRGA +L V+K+ TGHNADD+AETVL+N LRGD
Sbjct: 125 WTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGVNKICTGHNADDIAETVLMNFLRGD 184

Query: 196 IARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFLSKCIYSPNAYRGFAR 255
           IARL RCT+I TG +G IPRCKP KY YEKEIV+Y  F  + YF ++CIYSPNAYRG AR
Sbjct: 185 IARLRRCTSITTGSEGAIPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHAR 244

Query: 256 EFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLN 315
            F+KDLE IRP +I+DII SGE+  +    +MP QGTC RCGYISSQ  CKACVLLEGLN
Sbjct: 245 AFLKDLEAIRPSSIMDIIHSGENLSVKEDVRMPVQGTCTRCGYISSQSLCKACVLLEGLN 304

Query: 316 RGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIE 351
           RGLPK+GIG+   L ++   +E      + + ++++
Sbjct: 305 RGLPKLGIGKHHKLHHKLLSQEPLSEQEERKLKAVD 340

[Close]

BLAST of Carg03968 vs. Swiss-Prot
Match: sp|Q05AW7|CTU1_XENLA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis OX=8355 GN=ctu1 PE=2 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 5.2e-129
Identity = 218/335 (65.07%), Postives = 264/335 (78.81%), Query Frame = 0


Query: 16  CGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDST 75
           C  C   +A L+RPKT   +C++CF+  FEEEIH  IV   LF PGE++ +GASGGKDST
Sbjct: 5   CSSCEEWRAVLRRPKTGHSLCKDCFFYAFEEEIHNTIVSAKLFHPGEKVGIGASGGKDST 64

Query: 76  VLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYG 135
           VLA+V+  LN R+ YGLDL LLSVDEGI+GYRDDSL+TVKRN+ QY LPL+IVSY +LYG
Sbjct: 65  VLAHVMKVLNERYAYGLDLILLSVDEGISGYRDDSLQTVKRNQQQYELPLKIVSYLELYG 124

Query: 136 WTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGD 195
           WTMD+IVK +GLKNNCTFCGVFRRQALDRGA +L ++K+ TGHNADD+AETVL+N LRGD
Sbjct: 125 WTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGINKICTGHNADDIAETVLMNFLRGD 184

Query: 196 IARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFLSKCIYSPNAYRGFAR 255
           IARL RCTAI TG +G IPRCKP KYTYEKEIV+Y  F  + YF ++CIYSPNAYRG AR
Sbjct: 185 IARLRRCTAITTGSEGAIPRCKPLKYTYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHAR 244

Query: 256 EFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLN 315
            F+KDLE IRP +I+DII SGE+  ++   +MP QGTC RCGYISSQ  CKACVLLEGLN
Sbjct: 245 VFLKDLEAIRPSSIIDIIHSGENLSVNEDVRMPVQGTCTRCGYISSQSLCKACVLLEGLN 304

Query: 316 RGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSI 350
           RGLPK+GIG+   L ++   +E      + + R++
Sbjct: 305 RGLPKLGIGKHHKLHHKLLSQEPLSEQEERKLRAV 339

[Close]

BLAST of Carg03968 vs. TrEMBL
Match: tr|A0A0A0LKF0|A0A0A0LKF0_CUCSA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus OX=3659 GN=NCS6 PE=3 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 2.4e-184
Identity = 327/360 (90.83%), Postives = 340/360 (94.44%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEA  K ++ VS LC +CNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAAPKPKRAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLD+E  KRE  G S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSE-GKRETIG-SNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of Carg03968 vs. TrEMBL
Match: tr|A0A1S3BD41|A0A1S3BD41_CUCME (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis melo OX=3656 GN=LOC103488373 PE=3 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 5.4e-184
Identity = 324/360 (90.00%), Postives = 339/360 (94.17%), Query Frame = 0


Query: 1   MEEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEAG K ++ VS LC +CNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAGPKPKRPVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAA LKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAWLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFL 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF 
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 SKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           ++CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPK+GIGRSRGLD+E +K  +   S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSEGKKETI--GSNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of Carg03968 vs. TrEMBL
Match: tr|A0A2I4G343|A0A2I4G343_9ROSI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Juglans regia OX=51240 GN=LOC109004279 PE=3 SV=1)

HSP 1 Score: 629.0 bits (1621), Expect = 6.5e-177
Identity = 312/362 (86.19%), Postives = 335/362 (92.54%), Query Frame = 0


Query: 1   MEEA--GAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLF 60
           MEEA    KS KG   LC IC+ R+AALKRPKTL+QICRECFYEVFEEEIHQVIV+N LF
Sbjct: 1   MEEADGNGKSMKGRGRLCCICSKRRAALKRPKTLEQICRECFYEVFEEEIHQVIVENQLF 60

Query: 61  RPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE 120
           +PGERIA+GASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNE
Sbjct: 61  KPGERIAIGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE 120

Query: 121 IQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGH 180
           IQYGLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGH
Sbjct: 121 IQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGH 180

Query: 181 NADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFIV-VSY 240
           NADD+AETVLLNILRGDIARLSRCT+IITGEDGPIPRCKPFKYTYEKEIV+Y +   + Y
Sbjct: 181 NADDIAETVLLNILRGDIARLSRCTSIITGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDY 240

Query: 241 FLSKCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGY 300
           F ++CIYSPNAYRGFAREFIKDLERIRPRAILDII+SGEDFRISTSTKMPEQGTCERCGY
Sbjct: 241 FSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIQSGEDFRISTSTKMPEQGTCERCGY 300

Query: 301 ISSQKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTL 360
           ISSQKWCKACVLLEGLNRGLPK+GIGRSRGL+++ +    KG   +  T+SIESKQCGTL
Sbjct: 301 ISSQKWCKACVLLEGLNRGLPKLGIGRSRGLNDDRK----KGIKENIGTKSIESKQCGTL 358

[Close]

BLAST of Carg03968 vs. TrEMBL
Match: tr|A0A251R8B5|A0A251R8B5_PRUPE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica OX=3760 GN=NCS6 PE=3 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 1.1e-176
Identity = 307/359 (85.52%), Postives = 333/359 (92.76%), Query Frame = 0


Query: 2   EEAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPG 61
           E A  K++K  + LC +C+ +KAALKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG
Sbjct: 3   ESADGKAKKAGARLCCLCHQKKAALKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPG 62

Query: 62  ERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 121
           ERIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY
Sbjct: 63  ERIALGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 122

Query: 122 GLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 181
           GLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD
Sbjct: 123 GLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 182

Query: 182 DMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYPFIV-VSYFLS 241
           D+AETVLLNILRGDIARLSRCT+I+TGEDGPIPRCKPFKYTYEKEIV+Y +   + YF +
Sbjct: 183 DIAETVLLNILRGDIARLSRCTSIVTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFST 242

Query: 242 KCIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISS 301
           +CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE+FRISTSTKMPEQGTCERCGYISS
Sbjct: 243 ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISS 302

Query: 302 QKWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           QKWCKACVLLEGLNRGLPK+GIGR+RGL+N+ +K   K       T+SIESKQCGTLDF
Sbjct: 303 QKWCKACVLLEGLNRGLPKLGIGRTRGLNNDDKKDTKKTNG----TKSIESKQCGTLDF 357

[Close]

BLAST of Carg03968 vs. TrEMBL
Match: tr|A0A061FL46|A0A061FL46_THECC (Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao OX=3641 GN=NCS6 PE=3 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 5.5e-176
Identity = 307/358 (85.75%), Postives = 331/358 (92.46%), Query Frame = 0


Query: 3   EAGAKSRKGVSCLCGICNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGE 62
           EA AK +K    LC ICN R+A LKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG+
Sbjct: 2   EADAKPKKSGPRLCCICNQRRAVLKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPGD 61

Query: 63  RIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYG 122
           RIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE+QYG
Sbjct: 62  RIAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNELQYG 121

Query: 123 LPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADD 182
           LPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDK+ATGHNADD
Sbjct: 122 LPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKVATGHNADD 181

Query: 183 MAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVIYP-FIVVSYFLSK 242
           +AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIV+Y  F  + YF ++
Sbjct: 182 IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 241

Query: 243 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQ 302
           CIYSPNAYRGFAREFIKDLERIRPRAILDII SGE+FRISTSTKMPEQGTCERCGYISSQ
Sbjct: 242 CIYSPNAYRGFAREFIKDLERIRPRAILDIITSGENFRISTSTKMPEQGTCERCGYISSQ 301

Query: 303 KWCKACVLLEGLNRGLPKMGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           KWCKACVLLEGLNRGLPK+GIGRSRGL+N+ +K   +G    G T+SIESKQCG+LDF
Sbjct: 302 KWCKACVLLEGLNRGLPKLGIGRSRGLNNDIKKDTKQG----GGTKSIESKQCGSLDF 355

The following BLAST results are available for this feature:

BLAST of Carg03968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951723.1	7.4e-201	96.67	cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita moschata]	[more]
XP_023538431.1	4.8e-200	96.39	cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita pepo subsp. pepo] >XP_0235384...	[more]
XP_023002400.1	5.3e-199	96.11	cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita maxima]	[more]
XP_022144278.1	1.5e-188	92.22	cytoplasmic tRNA 2-thiolation protein 1 [Momordica charantia]	[more]
XP_011649473.1	3.7e-184	90.83	PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus] >KGN62283.1...	[more]

BLAST of Carg03968 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44270.2	6.1e-165	79.45	repressor of lrx1	[more]
AT1G76170.1	1.3e-159	84.83	2-thiocytidine tRNA biosynthesis protein, TtcA	[more]

BLAST of Carg03968 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64862\|CTU1_ARATH	2.6e-173	84.27	Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana OX=3702 GN=NCS6 ...	[more]
sp\|Q6Z6G6\|CTU1_ORYSJ	6.7e-161	80.17	Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
sp\|A8JF71\|CTU1_CHLRE	6.5e-132	69.69	Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii OX=3055 GN=...	[more]
sp\|Q5FW05\|CTU1_XENTR	1.0e-129	64.88	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis OX=8364 GN=ctu1 PE...	[more]
sp\|Q05AW7\|CTU1_XENLA	5.2e-129	65.07	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis OX=8355 GN=ctu1 PE=2 S...	[more]

BLAST of Carg03968 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKF0\|A0A0A0LKF0_CUCSA	2.4e-184	90.83	Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus OX=3659 GN=NCS6 PE=3 ...	[more]
tr\|A0A1S3BD41\|A0A1S3BD41_CUCME	5.4e-184	90.00	Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis melo OX=3656 GN=LOC103488373 ...	[more]
tr\|A0A2I4G343\|A0A2I4G343_9ROSI	6.5e-177	86.19	Cytoplasmic tRNA 2-thiolation protein 1 OS=Juglans regia OX=51240 GN=LOC10900427...	[more]
tr\|A0A251R8B5\|A0A251R8B5_PRUPE	1.1e-176	85.52	Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica OX=3760 GN=NCS6 PE=3 S...	[more]
tr\|A0A061FL46\|A0A061FL46_THECC	5.5e-176	85.75	Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao OX=3641 GN=NCS6 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0034227	tRNA thio-modification
GO:0002098	tRNA wobble uridine modification
GO:0008033	tRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR000541	Ncs6/Tuc1/Ctu1
IPR011063	TilS/TtcA_N
IPR014729	Rossmann-like_a/b/a_fold
IPR035107	tRNA_thiolation_TtcA_Ctu1
IPR032442	CTU1_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03968-RA	Carg03968-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032442	Cytoplasmic tRNA 2-thiolation protein 1, C-terminal	PFAM	PF16503	zn-ribbon_14	coord: 290..321 e-value: 4.5E-19 score: 67.5
IPR035107	tRNA thiolation protein, TtcA/Ctu1 type	PIRSF	PIRSF004976	ATPase_YdaO	coord: 12..322 e-value: 1.1E-120 score: 400.2
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 15..321 e-value: 8.6E-81 score: 273.4
IPR011063	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	PFAM	PF01171	ATP_bind_3	coord: 64..207 e-value: 8.6E-13 score: 48.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..359
None	No IPR available	PANTHER	PTHR11807	ATPASES OF THE PP SUPERFAMILY-RELATED	coord: 15..332
None	No IPR available	CDD	cd01993	Alpha_ANH_like_II	coord: 63..248 e-value: 2.90711E-84 score: 255.25
None	No IPR available	SUPERFAMILY	SSF52402	Adenine nucleotide alpha hydrolases-like	coord: 38..264
IPR000541	Cytoplasmic tRNA 2-thiolation protein 1	PANTHER	PTHR11807:SF12	CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1	coord: 15..332
IPR000541	Cytoplasmic tRNA 2-thiolation protein 1	HAMAP	MF_03053	CTU1	coord: 14..325 score: 49.956

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03968	Cla022384	Watermelon (97103) v1	carwmB0978
Carg03968	Csa2G348210	Cucumber (Chinese Long) v2	carcuB0991
Carg03968	MELO3C011328	Melon (DHL92) v3.5.1	carmeB0955
Carg03968	ClCG08G013910	Watermelon (Charleston Gray)	carwcgB0958
Carg03968	CSPI02G16970	Wild cucumber (PI 183967)	carcpiB1013
Carg03968	Cucsa.394160	Cucumber (Gy14) v1	carcgyB1101
Carg03968	CmaCh12G003830	Cucurbita maxima (Rimu)	carcmaB1349
Carg03968	CmoCh12G003330	Cucurbita moschata (Rifu)	carcmoB1310
Carg03968	Lsi08G012770	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03968	Cp4.1LG07g03320	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03968	CsGy2G016940	Cucumber (Gy14) v2	carcgybB0964
Carg03968	MELO3C011328.2	Melon (DHL92) v3.6.1	carmedB0961
Carg03968	Cla97C08G157410	Watermelon (97103) v2	carwmbB1034

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03968	Silver-seed gourd	carcarB168
Carg03968	Cucurbita maxima (Rimu)	carcmaB1357
Carg03968	Cucurbita moschata (Rifu)	carcmoB1319
Carg03968	Cucurbita pepo (Zucchini)	carcpeB1352
Carg03968	Wax gourd	carwgoB1142