Carg03938 (gene) Silver-seed gourd

Overview
NameCarg03938
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S11
LocationCucurbita_argyrosperma_scaffold_011 : 883579 .. 885959 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTGCTGCCTCTAGGGTTTTTCTTTTGGATCAGATTCTGCGGCTTAGTCGTCTATCGTAGCTTCGATACCTTAATCATGGCGGAACAGGTATGGATTTTGTTCTTTATCGCTTGTTTCATACATTGAATCGAGTCTAATTGGCGCTTGCATGTTTGAAACTCTGTTCTGCTTGTATTGCAGACGGAGAAGGCTTTTCTGAAGCAGCCGAAGGTGTTTCTTAGGTGAGAAATTTGACTGGTTATTGTGTAGTTTCGCTTAGTGATGCCTGTTTGAATGTCTCGCTTGATGCTGGCAAGGTTGTTTCTTTTTGCTGTCTAATATGTTACTGTATGTACTTTGATTCGTATGTTTTCAGCTCGAAGAAATCGGGGAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTTTGGAAGAGCATTGGCTTGGGGTTTAAAACTCCAAGAGAGGCTATTGAAGGTTTTAACCTCTTCATTTTCAGATCGGTGTTTTAACTTTGATTGTTCTTGTATGCTGAAGGATTCCTGCGTTTTTTTTTTTTGCTTTCTATTTCTATGATTTGCGTCGGCGACTTATAATCGAGGCTGAGAAGATGGTTTCTCTTCGCCTGAATTGATGTTTTTTATTTTAATTTCACGAGACTTGAATGAATCTACAGTTAGGGTGTAGTTGTTTTTAATTGAATGGTAGTTCTGATAGGGAGCATGAAGACATCATTTAACTATTGGCCCGTGTCATTACCGTTCAGCTTCTTTTTAGCTCCAAATATTACATTGTCGGCACTAAGCCTTTAGCCAATGTTATCTACACAATTGTGTGATTCAAGAATCAGCATTTAGCATTCCCATGCCCTGGATTCATAATCTGGGTTTGACACCTAATGACCCCGACATTTCCGTACATCTCTGCGACATGATCACGTTACTTGTTCTTTGTTTCAAAAAGTGAAGACTATACCCACAACCCAACACGAATCCTTCCAATATGTTTTTTCCTCACTCACATGCATCCTAGGAAAATTCTCAGGTCACCCAACCTAGAATTGTTGTTCCAAGTAAAGCACGCTTAACTATGAAGGTCTTATGATTGAGTGAAAAGCGAGGTGCACCTTGTTGGTATAGGTAGTGACTTTCAATTTTTTTTTTTCAAAACCTTTTCTTAGTCATTCTATCCTTAAGATCACTCTCATTCAGATTGGTCTCGATTCATTCATATACCTCTCATTTACTCAGGTGTCATAGTTATTTAACGAGGGTCTATGACATGATGGGGATCTTCCCCTTCCTTCAATTTAATGTCTGAATTGGATTCAATGCTATGACTATTCAGCATATACAATGTATATTTGTTGCTATTAAATCGCAGGTGTACTTTAGAAATTGCAAAATTGTGGAGTTTTCATATGGATTTCTGTTCTATCCTCTAATTCTTAGTTTTACTGAAGACTGAAGAGTATTTCTTCTGCAGGAACATATATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCCATTAGGGGCCGTATACTGGCAGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAGTATCAAAGGTGAGAAACTAATACTCCAATTATCTATGGTTATTTCCTATCCTATCAACCTACGGGAATCCTGAGGGAGTTCTTTTTTCAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCACGTCATCATTGGCCAGTGCAGGTTTATTATACATATACTTCATACGCCTCTGTTGCTTATACCCTTGTGCCTTTGATTGTAGTCATTTTCTTAATGAACGGCTATCTTTGCAGGCCTTTGTCGAAGACAGTGAGGTTTAATGTATTAAAAGTGATTCCTGCTGGATCATCCACAGCTGGAAAGAAGGCTTTCACTGGTATTTAAGTCGAGAATTTTCAGGTCCAGTATTTGTTTATGTGAGCTTTCTTTAGCTAAATGATCTTGTCACTTTATTAACTGAGTTTTTCCATTATTGTGATACTACTGCAATTTTGATTTCCCAAGTTTTGCTTTTCTTCATCAGTGCCCAAGTTCTTGTTTTATATCCAACCATATTTTCGATGTGCTATACCCTCCAGAAAGAGAGAAAAAATTGAAATGTGGCTGTATGATGTCTCTCAAATCATGTTTTCCTTTTCTTTTTTTGCCGTCCCCTTATGAGTTAAAAGGAAGTAGTTCTGAACTCGTTCTCTTGTTTATTGCCAATTTCAAATTAATTCCTTGAAAAGGAAGCTGGCTCTTGTTTAACCACATTAGAGGGAATCTTTGCTAGCATTGATTTGTAATCCAGAGCCAATC

mRNA sequence

TCTCTGCTGCCTCTAGGGTTTTTCTTTTGGATCAGATTCTGCGGCTTAGTCGTCTATCGTAGCTTCGATACCTTAATCATGGCGGAACAGACGGAGAAGGCTTTTCTGAAGCAGCCGAAGGTGTTTCTTAGCTCGAAGAAATCGGGGAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTTTGGAAGAGCATTGGCTTGGGGTTTAAAACTCCAAGAGAGGCTATTGAAGGAACATATATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCCATTAGGGGCCGTATACTGGCAGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAGTATCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCACGTCATCATTGGCCAGTGCAGGCCTTTGTCGAAGACAGTGAGGTTTAATGTATTAAAAGTGATTCCTGCTGGATCATCCACAGCTGGAAAGAAGGCTTTCACTGGTATTTAAGTCGAGAATTTTCAGGTCCAGTATTTGTTTATGTGAGCTTTCTTTAGCTAAATGATCTTGTCACTTTATTAACTGAGTTTTTCCATTATTGTGATACTACTGCAATTTTGATTTCCCAAGTTTTGCTTTTCTTCATCAGTGCCCAAGTTCTTGTTTTATATCCAACCATATTTTCGATGTGCTATACCCTCCAGAAAGAGAGAAAAAATTGAAATGTGGCTGTATGATGTCTCTCAAATCATGTTTTCCTTTTCTTTTTTTGCCGTCCCCTTATGAGTTAAAAGGAAGTAGTTCTGAACTCGTTCTCTTGTTTATTGCCAATTTCAAATTAATTCCTTGAAAAGGAAGCTGGCTCTTGTTTAACCACATTAGAGGGAATCTTTGCTAGCATTGATTTGTAATCCAGAGCCAATC

Coding sequence (CDS)

ATGGCGGAACAGACGGAGAAGGCTTTTCTGAAGCAGCCGAAGGTGTTTCTTAGCTCGAAGAAATCGGGGAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTTTGGAAGAGCATTGGCTTGGGGTTTAAAACTCCAAGAGAGGCTATTGAAGGAACATATATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCCATTAGGGGCCGTATACTGGCAGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAGTATCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCACGTCATCATTGGCCAGTGCAGGCCTTTGTCGAAGACAGTGAGGTTTAATGTATTAAAAGTGATTCCTGCTGGATCATCCACAGCTGGAAAGAAGGCTTTCACTGGTATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Homology
[Close]
BLAST of Carg03938 vs. NCBI nr
Match: XP_022132263.1 (40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_022961674.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_023002533.1 40S ribosomal protein S11 [Cucurbita maxima] >XP_023537513.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >XP_023545624.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 3.0e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]
BLAST of Carg03938 vs. NCBI nr
Match: XP_022996631.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 5.1e-85
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 26  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYIDKKCP 85

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 86  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 145

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG+
Sbjct: 146 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGV 184

[Close]
BLAST of Carg03938 vs. NCBI nr
Match: XP_008445242.1 (PREDICTED: 40S ribosomal protein S11 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 7.3e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]
BLAST of Carg03938 vs. NCBI nr
Match: XP_004138716.1 (PREDICTED: 40S ribosomal protein S11 [Cucumis sativus] >KGN62969.1 hypothetical protein Csa_2G382430 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 2.8e-83
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]
BLAST of Carg03938 vs. NCBI nr
Match: XP_017984026.1 (PREDICTED: 40S ribosomal protein S11 [Theobroma cacao] >EOY31291.1 Ribosomal protein S11-beta [Theobroma cacao] >OMO52226.1 Ribosomal protein S17 [Corchorus capsularis])

HSP 1 Score: 317.0 bits (811), Expect = 3.6e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHY+KKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg03938 vs. TAIR10
Match: AT5G23740.1 (ribosomal protein S11-beta)

HSP 1 Score: 303.5 bits (776), Expect = 7.5e-83
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Carg03938 vs. TAIR10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 303.1 bits (775), Expect = 9.8e-83
Identity = 146/160 (91.25%), Postives = 157/160 (98.12%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Carg03938 vs. TAIR10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 301.6 bits (771), Expect = 2.9e-82
Identity = 145/159 (91.19%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

[Close]
BLAST of Carg03938 vs. Swiss-Prot
Match: sp|P25460|RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.2e-83
Identity = 149/157 (94.90%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGK+PGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFT 158
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+ AGKKAFT
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157

[Close]
BLAST of Carg03938 vs. Swiss-Prot
Match: sp|Q9M5M1|RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.0e-82
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL+SKK+GKGKRPGKGGNRFWKSIGLGFKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAFT I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of Carg03938 vs. Swiss-Prot
Match: sp|P17093|RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-81
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLS+KK+GKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHI+P FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+  KKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of Carg03938 vs. Swiss-Prot
Match: sp|P42733|RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Carg03938 vs. Swiss-Prot
Match: sp|P16181|RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 146/160 (91.25%), Postives = 157/160 (98.12%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Carg03938 vs. TrEMBL
Match: tr|A0A1S3BCY7|A0A1S3BCY7_CUCME (40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.8e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]
BLAST of Carg03938 vs. TrEMBL
Match: tr|A0A0A0LPP1|A0A0A0LPP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382430 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-83
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]
BLAST of Carg03938 vs. TrEMBL
Match: tr|A0A061GP47|A0A061GP47_THECC (Ribosomal protein S11-beta OS=Theobroma cacao OX=3641 GN=TCM_038251 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHY+KKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg03938 vs. TrEMBL
Match: tr|A0A1R3G2B7|A0A1R3G2B7_COCAP (Ribosomal protein S17 OS=Corchorus capsularis OX=210143 GN=CCACVL1_29302 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHY+KKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg03938 vs. TrEMBL
Match: tr|A0A1U8JTQ0|A0A1U8JTQ0_GOSHI (40S ribosomal protein S11-like OS=Gossypium hirsutum OX=3635 GN=LOC107909206 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 7.0e-83
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKK GKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHY+KKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGM 159

The following BLAST results are available for this feature:
BLAST of Carg03938 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132263.13.0e-85100.0040S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal pr... [more]
XP_022996631.15.1e-8598.7440S ribosomal protein S11-like [Cucurbita maxima][more]
XP_008445242.17.3e-8498.11PREDICTED: 40S ribosomal protein S11 [Cucumis melo][more]
XP_004138716.12.8e-8397.48PREDICTED: 40S ribosomal protein S11 [Cucumis sativus] >KGN62969.1 hypothetical ... [more]
XP_017984026.13.6e-8396.86PREDICTED: 40S ribosomal protein S11 [Theobroma cacao] >EOY31291.1 Ribosomal pro... [more]
BLAST of Carg03938 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23740.17.5e-8391.82ribosomal protein S11-beta[more]
AT3G48930.19.8e-8391.25Nucleic acid-binding, OB-fold-like protein[more]
AT4G30800.12.9e-8291.19Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Carg03938 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P25460|RS11_MAIZE4.2e-8394.9040S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
sp|Q9M5M1|RS11_EUPES8.0e-8292.4540S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
sp|P17093|RS11_SOYBN1.0e-8192.4540S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
sp|P42733|RS113_ARATH1.4e-8191.8240S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
sp|P16181|RS111_ARATH1.8e-8191.2540S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
BLAST of Carg03938 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BCY7|A0A1S3BCY7_CUCME4.8e-8498.1140S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1[more]
tr|A0A0A0LPP1|A0A0A0LPP1_CUCSA1.8e-8397.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382430 PE=3 SV=1[more]
tr|A0A061GP47|A0A061GP47_THECC2.4e-8396.86Ribosomal protein S11-beta OS=Theobroma cacao OX=3641 GN=TCM_038251 PE=3 SV=1[more]
tr|A0A1R3G2B7|A0A1R3G2B7_COCAP2.4e-8396.86Ribosomal protein S17 OS=Corchorus capsularis OX=210143 GN=CCACVL1_29302 PE=3 SV... [more]
tr|A0A1U8JTQ0|A0A1U8JTQ0_GOSHI7.0e-8396.2340S ribosomal protein S11-like OS=Gossypium hirsutum OX=3635 GN=LOC107909206 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR019979Ribosomal_S17_CS
IPR032440Ribosomal_S11_N
IPR028333Ribosomal_S17_arc-typ
IPR000266Ribosomal_S17/S11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03938-RACarg03938-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 131..138
score: 73.25
coord: 121..131
score: 60.91
coord: 88..111
score: 37.33
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 74..142
e-value: 3.4E-25
score: 87.8
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..159
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 70..140
e-value: 3.0E-34
score: 360.0
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 54..143
e-value: 6.1E-34
score: 114.1
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..72
e-value: 2.9E-32
score: 110.8
NoneNo IPR availableGENE3DG3DSA:2.40.50.1000coord: 1..159
e-value: 1.0E-80
score: 270.9
NoneNo IPR availablePANTHERPTHR10744:SF1740S RIBOSOMAL PROTEIN S11-1-RELATEDcoord: 1..159
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 68..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03938Cla022340Watermelon (97103) v1carwmB0978
Carg03938Csa2G382430Cucumber (Chinese Long) v2carcuB0987
Carg03938MELO3C011276Melon (DHL92) v3.5.1carmeB0955
Carg03938ClCG08G013490Watermelon (Charleston Gray)carwcgB0958
Carg03938CSPI02G23690Wild cucumber (PI 183967)carcpiB1010
Carg03938Cucsa.162590Cucumber (Gy14) v1carcgyB1091
Carg03938CmaCh05G003700Cucurbita maxima (Rimu)carcmaB1357
Carg03938CmaCh12G003480Cucurbita maxima (Rimu)carcmaB1349
Carg03938CmoCh05G003730Cucurbita moschata (Rifu)carcmoB1319
Carg03938CmoCh12G002990Cucurbita moschata (Rifu)carcmoB1310
Carg03938Lsi08G012200Bottle gourd (USVL1VR-Ls)carlsiB898
Carg03938Cp4.1LG11g03230Cucurbita pepo (Zucchini)carcpeB1352
Carg03938Cp4.1LG07g03010Cucurbita pepo (Zucchini)carcpeB1368
Carg03938CsGy2G023460Cucumber (Gy14) v2carcgybB0960
Carg03938MELO3C011276.2Melon (DHL92) v3.6.1carmedB0961
Carg03938CsaV3_2G032240Cucumber (Chinese Long) v3carcucB1015
Carg03938Cla97C08G156880Watermelon (97103) v2carwmbB1034
Carg03938Bhi04G000012Wax gourdcarwgoB1142
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03938Carg09344Silver-seed gourdcarcarB168
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03938Wax gourdcarwgoB1149
Carg03938Silver-seed gourdcarcarB239
Carg03938Silver-seed gourdcarcarB558
Carg03938Silver-seed gourdcarcarB572
Carg03938Cucurbita maxima (Rimu)carcmaB1353
Carg03938Cucurbita moschata (Rifu)carcmoB1313
Carg03938Cucurbita moschata (Rifu)carcmoB1315
Carg03938Cucurbita pepo (Zucchini)carcpeB1356
Carg03938Cucurbita pepo (Zucchini)carcpeB1363
Carg03938Cucurbita pepo (Zucchini)carcpeB1364
Carg03938Bottle gourd (USVL1VR-Ls)carlsiB893
Carg03938Watermelon (Charleston Gray)carwcgB0957
Carg03938Watermelon (Charleston Gray)carwcgB0951
Carg03938Watermelon (Charleston Gray)carwcgB0955
Carg03938Watermelon (97103) v1carwmB0980
Carg03938Watermelon (97103) v2carwmbB1030
Carg03938Watermelon (97103) v2carwmbB1033
Carg03938Watermelon (97103) v2carwmbB1036