Carg03906 (gene) Silver-seed gourd

NameCarg03906
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_011 : 739467 .. 740674 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACTGTAATGCGTTGCAGTGCCGATATCTCCATGGGAGAGATGGAAGAGATGAGCGAGGAAGAAGACGGAGAGAAACAGAGGCTTCGACATGTCGTTCAATTCCTGTGAATGAAAACAGAGAGCGATTTTCAGAGCAAAATCCGACTCGTCGGCTTTTGAATATTGTTTCGCTACGATTTCATTTGATCGAATATGAAATTCATATTATACTAATTAACAAAAAAAAAAAACTCCGATTCTCGAACAGAGTTTTCTTCAATTCCTCTGCATTCAGACGCCAAATAAGTCACAGCCACCGAATACGTTAACCAATCAGGAGAAGACAACGAGGATTTCCCGGCCCCACCATTCGGCTGACGGGGACGGCCTTTTGAAATCCTCGCCGAATGGACCCCACTGGGATATGCCACGTCAGATTACGTCTTCGGCCGGCCCCACCGGCGAGGAGATAATGGTGATGACATGGCATTGGGGTATGAGTACTCTACCCTATCATATATTTTAATTATTAGAATATTATAATTTTAAATTAATTAAAATATAGATCAAACGGTCAAGACATATATGTTTGACCAATAAGTCAAATGTTTGACTCAAACGTAACTTTATTTATAATAAGAAGCTTTGATCTCCGTTTCAATTTTATCTTCGTAAAATTCTCTATTTATTTTTGCTTGAAACAGGGCGAGAATTCTCCACGTGAGTATCGAGTTCCCTCGTTAGGAACTTTTTCATCTTTTTATGTGTATATATTTTTTAAAATATTAATTTTAAAGAATTTTTAATGGATAATTCTCATTTTTTTAATGTAATTTTTATAAACATCCAATTCAAAAATATTTTATAAAGAAAAAAATATAATACAATATTTAACGTAATTTTAATGTAATAGTTATGAGAAGCATGCAATTTTTTGAGTTTATATTTAAAATTGTGGAGAAAGTTCTGGATATTGCAGAAAAGGCCGTGGACAGTCCATGACAATTGTTTGGGCCTTTTGAGCTGCAGTCCTGCCATGGCCGAGAGCACAGAGAAACCATTCTACACCACTGAGTTATTCTATAATTCTTCCATTAAAGTCACATCCAATTCCACTTATGTCAATACTCCCATAGCAATTGGTAGATATGCTTCCGTTTCTTCCTTCCTTTGCTCATCCATCGCTAATTGCTTCATGATTTCAACTCTCAACCATTTCTAG

mRNA sequence

ATGGAGGACTGTAATGCGTTGCAGTGCCGATATCTCCATGGGAGAGATGGAAGAGATGAGCGAGGAAGAAGACGGAGAGAAACAGAGGCTTCGACATGTCGTTCAATTCCTGTGAATGAAAACAGAGAGCGATTTTCAGAGCAAAATCCGACTCGTCGGCTTTTGAATATTACGCCAAATAAGTCACAGCCACCGAATACGTTAACCAATCAGGAGAAGACAACGAGGATTTCCCGGCCCCACCATTCGGCTGACGGGGACGGCCTTTTGAAATCCTCGCCGAATGGACCCCACTGGGATATGCCACGTCAGATTACGTCTTCGGCCGGCCCCACCGGCGAGGAGATAATGAAAAGGCCGTGGACAGTCCATGACAATTGTTTGGGCCTTTTGAGCTGCAGTCCTGCCATGGCCGAGAGCACAGAGAAACCATTCTACACCACTGAGTTATTCTATAATTCTTCCATTAAAGTCACATCCAATTCCACTTATGTCAATACTCCCATAGCAATTGGTAGATATGCTTCCGTTTCTTCCTTCCTTTGCTCATCCATCGCTAATTGCTTCATGATTTCAACTCTCAACCATTTCTAG

Coding sequence (CDS)

ATGGAGGACTGTAATGCGTTGCAGTGCCGATATCTCCATGGGAGAGATGGAAGAGATGAGCGAGGAAGAAGACGGAGAGAAACAGAGGCTTCGACATGTCGTTCAATTCCTGTGAATGAAAACAGAGAGCGATTTTCAGAGCAAAATCCGACTCGTCGGCTTTTGAATATTACGCCAAATAAGTCACAGCCACCGAATACGTTAACCAATCAGGAGAAGACAACGAGGATTTCCCGGCCCCACCATTCGGCTGACGGGGACGGCCTTTTGAAATCCTCGCCGAATGGACCCCACTGGGATATGCCACGTCAGATTACGTCTTCGGCCGGCCCCACCGGCGAGGAGATAATGAAAAGGCCGTGGACAGTCCATGACAATTGTTTGGGCCTTTTGAGCTGCAGTCCTGCCATGGCCGAGAGCACAGAGAAACCATTCTACACCACTGAGTTATTCTATAATTCTTCCATTAAAGTCACATCCAATTCCACTTATGTCAATACTCCCATAGCAATTGGTAGATATGCTTCCGTTTCTTCCTTCCTTTGCTCATCCATCGCTAATTGCTTCATGATTTCAACTCTCAACCATTTCTAG

Protein sequence

MEDCNALQCRYLHGRDGRDERGRRRRETEASTCRSIPVNENRERFSEQNPTRRLLNITPNKSQPPNTLTNQEKTTRISRPHHSADGDGLLKSSPNGPHWDMPRQITSSAGPTGEEIMKRPWTVHDNCLGLLSCSPAMAESTEKPFYTTELFYNSSIKVTSNSTYVNTPIAIGRYASVSSFLCSSIANCFMISTLNHF
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03906-RACarg03906-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..74

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03906CmoCh12G002700Cucurbita moschata (Rifu)carcmoB1310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg03906Silver-seed gourdcarcarB168
Carg03906Silver-seed gourdcarcarB239
Carg03906Silver-seed gourdcarcarB529
Carg03906Silver-seed gourdcarcarB558
Carg03906Silver-seed gourdcarcarB572
Carg03906Cucumber (Gy14) v2carcgybB0960
Carg03906Cucumber (Gy14) v2carcgybB0961
Carg03906Cucumber (Gy14) v2carcgybB0965
Carg03906Cucumber (Gy14) v1carcgyB1091
Carg03906Cucumber (Gy14) v1carcgyB1096
Carg03906Cucurbita maxima (Rimu)carcmaB1347
Carg03906Cucurbita maxima (Rimu)carcmaB1349
Carg03906Cucurbita maxima (Rimu)carcmaB1350
Carg03906Cucurbita maxima (Rimu)carcmaB1353
Carg03906Cucurbita maxima (Rimu)carcmaB1357
Carg03906Cucurbita maxima (Rimu)carcmaB1359
Carg03906Cucurbita moschata (Rifu)carcmoB1308
Carg03906Cucurbita moschata (Rifu)carcmoB1311
Carg03906Cucurbita moschata (Rifu)carcmoB1313
Carg03906Cucurbita moschata (Rifu)carcmoB1315
Carg03906Cucurbita moschata (Rifu)carcmoB1319
Carg03906Cucurbita pepo (Zucchini)carcpeB1352
Carg03906Cucurbita pepo (Zucchini)carcpeB1354
Carg03906Cucurbita pepo (Zucchini)carcpeB1356
Carg03906Cucurbita pepo (Zucchini)carcpeB1363
Carg03906Cucurbita pepo (Zucchini)carcpeB1366
Carg03906Cucurbita pepo (Zucchini)carcpeB1368
Carg03906Wild cucumber (PI 183967)carcpiB1010
Carg03906Wild cucumber (PI 183967)carcpiB1011
Carg03906Wild cucumber (PI 183967)carcpiB1016
Carg03906Cucumber (Chinese Long) v2carcuB0987
Carg03906Cucumber (Chinese Long) v2carcuB0988
Carg03906Cucumber (Chinese Long) v2carcuB0993
Carg03906Cucumber (Chinese Long) v3carcucB1015
Carg03906Cucumber (Chinese Long) v3carcucB1016
Carg03906Cucumber (Chinese Long) v3carcucB1021
Carg03906Bottle gourd (USVL1VR-Ls)carlsiB895
Carg03906Bottle gourd (USVL1VR-Ls)carlsiB898
Carg03906Melon (DHL92) v3.5.1carmeB0955
Carg03906Melon (DHL92) v3.5.1carmeB0957
Carg03906Melon (DHL92) v3.6.1carmedB0961
Carg03906Melon (DHL92) v3.6.1carmedB0963
Carg03906Watermelon (Charleston Gray)carwcgB0957
Carg03906Watermelon (Charleston Gray)carwcgB0958
Carg03906Watermelon (Charleston Gray)carwcgB0955
Carg03906Watermelon (97103) v1carwmB0980
Carg03906Watermelon (97103) v1carwmB0978
Carg03906Watermelon (97103) v1carwmB0982
Carg03906Watermelon (97103) v2carwmbB1031
Carg03906Watermelon (97103) v2carwmbB1033
Carg03906Watermelon (97103) v2carwmbB1034
Carg03906Wax gourdcarwgoB1151
Carg03906Wax gourdcarwgoB1145