Carg03892 (gene) Silver-seed gourd

Overview
NameCarg03892
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_011 : 654509 .. 656524 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTTGCTTCAATTCCCGCCATTAATTATCCTCATCGACTTACCCGGAAACTTCGCTCTTCGGCGAATTATTCCACTTCCTGTGCTCTTAGCAGTGTAAACATCATCGAAGACAGCCATACCAACAATTGGAAATACCTCGATTTGCAGTCACGAATGCAGAACTATGCGGCTTCAGGTGATCTTCCTGAAGCTTTAGAGACTCTGAATTTCATGAAAAATGTTGCCGGGAAGCCCTCTGTATATGATTACAACGCGTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTCGTTGGAACAATTGGTTCAAGTTTATATCGGAATGAAGAATTTCGGGCCATCCCCAAACAGAACAACTTTCAACATACTTCTTAATGGATTTCTGTCATTAGGTTACCTGAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAAAGTGGGATTAATCCATCTTTCACATCCTTGTCCAAATTGCTTAAACGTTCGATGAAATCAGGTAATTTAGTGGATTCTATTTGGATATTCAAGTTCATGTTGAGATTAGATCATTTGCCTACTGAACCCACTGTGGCTATGTTTATGTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCCTACAGCTTTTGTGCTAAACTAATATCTAAAAATCTTAATTTTCAAGCATATGTGTTTAATCCTGTTCTTTGGGCATTGTGCAAGTGTGGCAACAGTTCTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAATGGCATAGCTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAATGTTTGTGGGTTGATCTTTATAGTTTCTTAGATCAAATGAGAAGTGATGGATGTAAGCCGAACGTCGTTACTTACACGGTTATTATTAAGTTTCTTTGTGACGATGGGAGGATTGTTGAAGCGTTTGAAATCTTGAAATCCATGGAAATTGAGGGTTGTGATCCAGATTTGATAACTTATAATATAATTATCCGTGCACTTTGCCTCTATGATAGAACGTGCGATGTTGTTGAGCTTTTACAGTTGGTTCATCGTAGAGGTTTCTCTCCCGATCCGTATACATATGCTGCTTTGGCTGGAGGGATTATGAAGGTAGGAAAGACAGAAATTGCTTATGAGTTATTACGTAAAGTGTTCACGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCGAAATAATAGATCAAGAGAAGCCTTTTCTCTGTTGAAAAGTATGACGAAAGGAGGTATTGTTCCAACTACTGTGTCGTATAATACAGTTTTAAGGGGCTTTTGTAGAGACAATGAAATTCAACATGCTTTGAAGCTATTAGAATGCTTCGAGTGGCCTGAGAGCGGCCCTGATGTCGTTTCATTTAATACGGTTCTCTCCGCTGCATGCAAACTTGGGGATTTAGTTTTAATTCAGAGGGTTTTGCAATACATGGAATGTAAAGGTGTTGAGCCAGATGTAAGAAGCTTGACTTGTTTGGTTCGATATTTGTCTACAGTGGGACGATATTCAGAATGTTGGAGATTATTGGAATACATGATATGTAACAGCCCCGTTCCCTCGAGTGTCACTTTCAATATCTTCCTAGACAAGCTTTGCAGAAATGGATTTAATAGTAAGGCATACCAGATATTTGAGCGTATACAAAAAGCTGGGTTATCGCTTGACCGAAAAACATATAATATTCTTCTACGTTCCTTCTTAAGAAAGCGTGATATCGATCTGGTGGAACGTCTTATTCAGGATATGTACAAGCAGAGATTGGATCCTGATCTTTTTATAAATGGTTCCAAGATTAGTGGACTTTGTCAAGAAGGTAACATTTCTACTGCTCTCTTTACGAGGGGTCGAACTCTAGGGAATGGACTTACTCTATCTATGGAAACGTGCAATAGATCGTTGAAGACCGTTATCCATAAAAATAATCATCGGGATATGACTTGTCACGGAATGGTGACGGCCTAA

mRNA sequence

ATGCGTTTTGCTTCAATTCCCGCCATTAATTATCCTCATCGACTTACCCGGAAACTTCGCTCTTCGGCGAATTATTCCACTTCCTGTGCTCTTAGCAGTGTAAACATCATCGAAGACAGCCATACCAACAATTGGAAATACCTCGATTTGCAGTCACGAATGCAGAACTATGCGGCTTCAGGTGATCTTCCTGAAGCTTTAGAGACTCTGAATTTCATGAAAAATGTTGCCGGGAAGCCCTCTGTATATGATTACAACGCGTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTCGTTGGAACAATTGGTTCAAGTTTATATCGGAATGAAGAATTTCGGGCCATCCCCAAACAGAACAACTTTCAACATACTTCTTAATGGATTTCTGTCATTAGGTTACCTGAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAAAGTGGGATTAATCCATCTTTCACATCCTTGTCCAAATTGCTTAAACGTTCGATGAAATCAGGTAATTTAGTGGATTCTATTTGGATATTCAAGTTCATGTTGAGATTAGATCATTTGCCTACTGAACCCACTGTGGCTATGTTTATGTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCCTACAGCTTTTGTGCTAAACTAATATCTAAAAATCTTAATTTTCAAGCATATGTGTTTAATCCTGTTCTTTGGGCATTGTGCAAGTGTGGCAACAGTTCTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAATGGCATAGCTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAATGTTTGTGGGTTGATCTTTATAGTTTCTTAGATCAAATGAGAAGTGATGGATGTAAGCCGAACGTCGTTACTTACACGGTTATTATTAAGTTTCTTTGTGACGATGGGAGGATTGTTGAAGCGTTTGAAATCTTGAAATCCATGGAAATTGAGGGTTGTGATCCAGATTTGATAACTTATAATATAATTATCCGTGCACTTTGCCTCTATGATAGAACGTGCGATGTTGTTGAGCTTTTACAGTTGGTTCATCGTAGAGGTTTCTCTCCCGATCCGTATACATATGCTGCTTTGGCTGGAGGGATTATGAAGGTAGGAAAGACAGAAATTGCTTATGAGTTATTACGTAAAGTGTTCACGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCGAAATAATAGATCAAGAGAAGCCTTTTCTCTGTTGAAAAGTATGACGAAAGGAGGTATTGTTCCAACTACTGTGTCGTATAATACAGTTTTAAGGGGCTTTTGTAGAGACAATGAAATTCAACATGCTTTGAAGCTATTAGAATGCTTCGAGTGGCCTGAGAGCGGCCCTGATGTCGTTTCATTTAATACGGTTCTCTCCGCTGCATGCAAACTTGGGGATTTAGTTTTAATTCAGAGGGTTTTGCAATACATGGAATGTAAAGGTGTTGAGCCAGATGTAAGAAGCTTGACTTGTTTGGTTCGATATTTGTCTACAGTGGGACGATATTCAGAATGTTGGAGATTATTGGAATACATGATATGTAACAGCCCCGTTCCCTCGAGTGTCACTTTCAATATCTTCCTAGACAAGCTTTGCAGAAATGGATTTAATAGTAAGGCATACCAGATATTTGAGCGTATACAAAAAGCTGGGTTATCGCTTGACCGAAAAACATATAATATTCTTCTACGTTCCTTCTTAAGAAAGCGTGATATCGATCTGGTGGAACGTCTTATTCAGGATATGTACAAGCAGAGATTGGATCCTGATCTTTTTATAAATGGTTCCAAGATTAGTGGACTTTGTCAAGAAGGTAACATTTCTACTGCTCTCTTTACGAGGGGTCGAACTCTAGGGAATGGACTTACTCTATCTATGGAAACGTGCAATAGATCGTTGAAGACCGTTATCCATAAAAATAATCATCGGGATATGACTTGTCACGGAATGGTGACGGCCTAA

Coding sequence (CDS)

ATGCGTTTTGCTTCAATTCCCGCCATTAATTATCCTCATCGACTTACCCGGAAACTTCGCTCTTCGGCGAATTATTCCACTTCCTGTGCTCTTAGCAGTGTAAACATCATCGAAGACAGCCATACCAACAATTGGAAATACCTCGATTTGCAGTCACGAATGCAGAACTATGCGGCTTCAGGTGATCTTCCTGAAGCTTTAGAGACTCTGAATTTCATGAAAAATGTTGCCGGGAAGCCCTCTGTATATGATTACAACGCGTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTCGTTGGAACAATTGGTTCAAGTTTATATCGGAATGAAGAATTTCGGGCCATCCCCAAACAGAACAACTTTCAACATACTTCTTAATGGATTTCTGTCATTAGGTTACCTGAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAAAGTGGGATTAATCCATCTTTCACATCCTTGTCCAAATTGCTTAAACGTTCGATGAAATCAGGTAATTTAGTGGATTCTATTTGGATATTCAAGTTCATGTTGAGATTAGATCATTTGCCTACTGAACCCACTGTGGCTATGTTTATGTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCCTACAGCTTTTGTGCTAAACTAATATCTAAAAATCTTAATTTTCAAGCATATGTGTTTAATCCTGTTCTTTGGGCATTGTGCAAGTGTGGCAACAGTTCTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAATGGCATAGCTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAATGTTTGTGGGTTGATCTTTATAGTTTCTTAGATCAAATGAGAAGTGATGGATGTAAGCCGAACGTCGTTACTTACACGGTTATTATTAAGTTTCTTTGTGACGATGGGAGGATTGTTGAAGCGTTTGAAATCTTGAAATCCATGGAAATTGAGGGTTGTGATCCAGATTTGATAACTTATAATATAATTATCCGTGCACTTTGCCTCTATGATAGAACGTGCGATGTTGTTGAGCTTTTACAGTTGGTTCATCGTAGAGGTTTCTCTCCCGATCCGTATACATATGCTGCTTTGGCTGGAGGGATTATGAAGGTAGGAAAGACAGAAATTGCTTATGAGTTATTACGTAAAGTGTTCACGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCGAAATAATAGATCAAGAGAAGCCTTTTCTCTGTTGAAAAGTATGACGAAAGGAGGTATTGTTCCAACTACTGTGTCGTATAATACAGTTTTAAGGGGCTTTTGTAGAGACAATGAAATTCAACATGCTTTGAAGCTATTAGAATGCTTCGAGTGGCCTGAGAGCGGCCCTGATGTCGTTTCATTTAATACGGTTCTCTCCGCTGCATGCAAACTTGGGGATTTAGTTTTAATTCAGAGGGTTTTGCAATACATGGAATGTAAAGGTGTTGAGCCAGATGTAAGAAGCTTGACTTGTTTGGTTCGATATTTGTCTACAGTGGGACGATATTCAGAATGTTGGAGATTATTGGAATACATGATATGTAACAGCCCCGTTCCCTCGAGTGTCACTTTCAATATCTTCCTAGACAAGCTTTGCAGAAATGGATTTAATAGTAAGGCATACCAGATATTTGAGCGTATACAAAAAGCTGGGTTATCGCTTGACCGAAAAACATATAATATTCTTCTACGTTCCTTCTTAAGAAAGCGTGATATCGATCTGGTGGAACGTCTTATTCAGGATATGTACAAGCAGAGATTGGATCCTGATCTTTTTATAAATGGTTCCAAGATTAGTGGACTTTGTCAAGAAGGTAACATTTCTACTGCTCTCTTTACGAGGGGTCGAACTCTAGGGAATGGACTTACTCTATCTATGGAAACGTGCAATAGATCGTTGAAGACCGTTATCCATAAAAATAATCATCGGGATATGACTTGTCACGGAATGGTGACGGCCTAA

Protein sequence

MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFMLRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNSSLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDQMRSDGCKPNVVTYTVIIKFLCDDGRIVEAFEILKSMEIEGCDPDLITYNIIIRALCLYDRTCDVVELLQLVHRRGFSPDPYTYAALAGGIMKVGKTEIAYELLRKVFTRNCTVDVVVYNIYFHCLCRNNRSREAFSLLKSMTKGGIVPTTVSYNTVLRGFCRDNEIQHALKLLECFEWPESGPDVVSFNTVLSAACKLGDLVLIQRVLQYMECKGVEPDVRSLTCLVRYLSTVGRYSECWRLLEYMICNSPVPSSVTFNIFLDKLCRNGFNSKAYQIFERIQKAGLSLDRKTYNILLRSFLRKRDIDLVERLIQDMYKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNNHRDMTCHGMVTA
Homology
[Close]
BLAST of Carg03892 vs. NCBI nr
Match: XP_023002254.1 (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 586.3 bits (1510), Expect = 1.4e-163
Identity = 632/670 (94.33%), Postives = 640/670 (95.52%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           MRFASIPAINYPHRLTRKLR S NYSTSCALSSVNII+DS+T+NWKYLDLQSRMQNYAAS
Sbjct: 1   MRFASIPAINYPHRLTRKLRFSVNYSTSCALSSVNIIQDSNTHNWKYLDLQSRMQNYAAS 60

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           GDLPEALETLNFMKNVAGKPS+YDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT
Sbjct: 61  GDLPEALETLNFMKNVAGKPSIYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFM 180
           TFNILLNGFLSLGYLRDAYFFAEEMTKSG+NPSFTSLSKLLK SMKSGNLVDSIWIFKFM
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 LRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240
           LRLDHLPTEPTVAMF+CMLCKARMLEEAY FCAKLISKNLNFQAYVFNPVLWALCKCG S
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGKS 240

Query: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300
           SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSLDRKTYNILLRSFLRKRDIDLVERLIQDM 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   RDI+LVE LIQDM
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDINLVECLIQDM 600

Query: 601 YKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNNH 660
           YKQRLDPDLFI GSKISGLCQEGNISTALFTR RTLGNGLT SME CNRSLKTV+HKN H
Sbjct: 601 YKQRLDPDLFIYGSKISGLCQEGNISTALFTRDRTLGNGLTPSMEMCNRSLKTVMHKNKH 660

Query: 661 RDMTCHGMVT 671
           RDMTCHGMVT
Sbjct: 661 RDMTCHGMVT 670

[Close]
BLAST of Carg03892 vs. NCBI nr
Match: XP_022951234.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 567.0 bits (1460), Expect = 8.5e-158
Identity = 626/671 (93.29%), Postives = 630/671 (93.89%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           MRFASIPAINYPHRL+RKLRSSANYSTSCALSSVNIIEDSHTNN KYLDLQSRMQNYAAS
Sbjct: 1   MRFASIPAINYPHRLSRKLRSSANYSTSCALSSVNIIEDSHTNNRKYLDLQSRMQNYAAS 60

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFM 180
           TFNILLNGFLSLGYLRDAYFFAEEMTKSG+NPSFTSLSKLLK SMKSGN+VDSIWIFKFM
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNVVDSIWIFKFM 180

Query: 181 LRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240
           LRLDHLPTEPTVAMF+CMLCKARMLEEAY FCAKLISKNLNFQAYVFNPVLWALCKCGNS
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300
           SLALQLFYMMKKNGI HNVCSYTALLYGFGRECLWVDLYSF  XXXXXXXXXXXXXXXXX
Sbjct: 241 SLALQLFYMMKKNGIPHNVCSYTALLYGFGRECLWVDLYSFXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSLDRKTYNILLRSFLRKRDIDLVERLIQDM 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 YKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNNH 660
            KQRLDPDLFI GSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKN H
Sbjct: 601 XKQRLDPDLFIYGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNKH 660

Query: 661 RDMTCHGMVTA 672
           RDMTCHGMVTA
Sbjct: 661 RDMTCHGMVTA 671

[Close]
BLAST of Carg03892 vs. NCBI nr
Match: XP_023537059.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 551.6 bits (1420), Expect = 3.7e-153
Identity = 269/283 (95.05%), Postives = 277/283 (97.88%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           MRFASIPA+NYPHRLTRK  SS NYSTSCALSS+NIIEDS+T++WKYLDLQSRMQNYAAS
Sbjct: 1   MRFASIPALNYPHRLTRKFCSSVNYSTSCALSSINIIEDSNTHSWKYLDLQSRMQNYAAS 60

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVS+EQLVQVYIGMKN GPSPNRT
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSVEQLVQVYIGMKNLGPSPNRT 120

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFM 180
           TFNILLNGFLSLGYLRDAYFFAEEMTKSG+NPSFTSLSKLLK SMKSGNLVDSIWIFKFM
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 LRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240
           LRLDHLPTEPTVAMF+CMLCKARMLEEAY FCAKLISKNLNFQAYVFNPVLWALCKCGNS
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD 284
           SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD 283

[Close]
BLAST of Carg03892 vs. NCBI nr
Match: XP_023522453.1 (pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.8 bits (1418), Expect = 6.3e-153
Identity = 616/671 (91.80%), Postives = 625/671 (93.14%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           MRFASIPA+NYPHRLTRK  SS NYSTSCALSS+NIIEDS+T++WKYLDLQSRMQNYAAS
Sbjct: 1   MRFASIPALNYPHRLTRKFCSSVNYSTSCALSSINIIEDSNTHSWKYLDLQSRMQNYAAS 60

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVS+EQLVQVYIGMKN GPSPNRT
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSVEQLVQVYIGMKNLGPSPNRT 120

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFM 180
           TFNILLNGFLSLGYLRDAYFFAEEMTKSG+NPSFTSLSKLLK SMKSGNLVDSIWIFKFM
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 LRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240
           LRLDHLPTEPTVAMF+CMLCKARMLEEAY FCAKLISKNLNFQAYVFNPVLWALCKCGNS
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300
           SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSLDRKTYNILLRSFLRKRDIDLVERLIQDM 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 YKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNNH 660
               L+PDLFI GS ISGLCQEGNISTALFTRGRTLGNGLT SMETCNRSLKTVIHKN H
Sbjct: 601 XXXXLNPDLFIYGSNISGLCQEGNISTALFTRGRTLGNGLTPSMETCNRSLKTVIHKNKH 660

Query: 661 RDMTCHGMVTA 672
           RDMTCHGMVTA
Sbjct: 661 RDMTCHGMVTA 671

[Close]
BLAST of Carg03892 vs. NCBI nr
Match: XP_023002255.1 (pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 599/670 (89.40%), Postives = 606/670 (90.45%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           MRFASIPAINYPHRLTRKLR S NYSTSCALSSVNII+DS+T+NWKYLDLQSRMQNYAAS
Sbjct: 1   MRFASIPAINYPHRLTRKLRFSVNYSTSCALSSVNIIQDSNTHNWKYLDLQSRMQNYAAS 60

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           GDLPEALETLNFMKNVAGKPS+YDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT
Sbjct: 61  GDLPEALETLNFMKNVAGKPSIYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFM 180
           TFNILLNGFLSLGYLRDAYFFAEEMTKSG+NPSFTSLSKLLK SMKS             
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKS------------- 180

Query: 181 LRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240
                                ARMLEEAY FCAKLISKNLNFQAYVFNPVLWALCKCG S
Sbjct: 181 ---------------------ARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGKS 240

Query: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300
           SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLDXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSLDRKTYNILLRSFLRKRDIDLVERLIQDM 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   RDI+LVE LIQDM
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDINLVECLIQDM 600

Query: 601 YKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLTLSMETCNRSLKTVIHKNNH 660
           YKQRLDPDLFI GSKISGLCQEGNISTALFTR RTLGNGLT SME CNRSLKTV+HKN H
Sbjct: 601 YKQRLDPDLFIYGSKISGLCQEGNISTALFTRDRTLGNGLTPSMEMCNRSLKTVMHKNKH 636

Query: 661 RDMTCHGMVT 671
           RDMTCHGMVT
Sbjct: 661 RDMTCHGMVT 636

[Close]
BLAST of Carg03892 vs. TAIR10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 6.3e-06
Identity = 44/163 (26.99%), Postives = 71/163 (43.56%), Query Frame = 0 

Query: 56  NYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGP 115
           N AA G       T  F   V    +V+  +AL   Y   G ++L Q+V       N  P
Sbjct: 400 NIAALG---HGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIV------FNMMP 459

Query: 116 SPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIW 175
           + N   +N L+NGF   G  ++     E + ++ + P F S + LL    + G L D  W
Sbjct: 460 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG-LTDEGW 519

Query: 176 IFKFMLRLDHLPTEPTVAMFMCM---LCKARMLEEAYSFCAKL 216
            + F +  +    +P +  + CM   L +A  L+EAY    ++
Sbjct: 520 KY-FKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551

[Close]
BLAST of Carg03892 vs. TAIR10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 8.3e-06
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 0 

Query: 57  YAASGDLPEALETLNFMKNVAGKPSVYDYNAL---FHRYLSSGNVSLEQLVQVYIGMKNF 116
           Y   G    AL+    M  +  KP++   N L     RY SS ++S  +  +V+  M   
Sbjct: 141 YLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAR--EVFDDMVKI 200

Query: 117 GPSPNRTTFNILLNGFLSLGYLRDAYFFAEEM-TKSGINPSFTSLSKLLKRSMKSGNLVD 173
           G S N  TFN+L+NG+   G L DA    E M ++  +NP   + + +LK   K G L D
Sbjct: 201 GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSD 258

[Close]
BLAST of Carg03892 vs. Swiss-Prot
Match: sp|Q9LNU6|PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-04
Identity = 44/163 (26.99%), Postives = 71/163 (43.56%), Query Frame = 0 

Query: 56  NYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGP 115
           N AA G       T  F   V    +V+  +AL   Y   G ++L Q+V       N  P
Sbjct: 400 NIAALG---HGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIV------FNMMP 459

Query: 116 SPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIW 175
           + N   +N L+NGF   G  ++     E + ++ + P F S + LL    + G L D  W
Sbjct: 460 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG-LTDEGW 519

Query: 176 IFKFMLRLDHLPTEPTVAMFMCM---LCKARMLEEAYSFCAKL 216
            + F +  +    +P +  + CM   L +A  L+EAY    ++
Sbjct: 520 KY-FKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551

[Close]
BLAST of Carg03892 vs. Swiss-Prot
Match: sp|Q9ZVX5|PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-04
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 0 

Query: 57  YAASGDLPEALETLNFMKNVAGKPSVYDYNAL---FHRYLSSGNVSLEQLVQVYIGMKNF 116
           Y   G    AL+    M  +  KP++   N L     RY SS ++S  +  +V+  M   
Sbjct: 141 YLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAR--EVFDDMVKI 200

Query: 117 GPSPNRTTFNILLNGFLSLGYLRDAYFFAEEM-TKSGINPSFTSLSKLLKRSMKSGNLVD 173
           G S N  TFN+L+NG+   G L DA    E M ++  +NP   + + +LK   K G L D
Sbjct: 201 GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSD 258

[Close]
BLAST of Carg03892 vs. TrEMBL
Match: tr|A0A124SBS2|A0A124SBS2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006461 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-45
Identity = 107/256 (41.80%), Postives = 155/256 (60.55%), Query Frame = 0 

Query: 21  SSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAASGDLPEALETLNFMKNVAGKP 80
           S ++ S+S  + S+++ E+ + +   Y +L+++MQN   SG + +ALE  + M+NV+GKP
Sbjct: 2   SLSSSSSSSVVQSLDMAEEDNPHCPNYGELRTKMQNLTRSGSIGKALEIFHLMRNVSGKP 61

Query: 81  SVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRTTFNILLNGFLSLGYLRDAYF 140
           +VYDYN+L + YL S  V L  L  +Y  MK     PN +TFN  L G   LG  + A  
Sbjct: 62  TVYDYNSLINCYLKSNKVGLHDLCGLYFEMKRVELHPNASTFNTFLKGLSLLGESKVAIS 121

Query: 141 FAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDSIWIFKFMLRLDHLPTEPTVAMFMCMLC 200
              EM   G  PSF+ LS LLK+ + S  LVD + +   ML L+++PTEP V + +  L 
Sbjct: 122 VIVEMCNYGFTPSFSCLSNLLKKCLDSMELVDGLRVLDLMLGLNYIPTEPKVILLINSLS 181

Query: 201 KARMLEEAYSFCAKLISKNLNFQA-YVFNPVLWALCKCGNSSLALQLFYMMKKNGIAHNV 260
           +  M  +A     KL+    NFQ+ YV+NP+LW+LCK    S AL  F  +KK G+ HNV
Sbjct: 182 RCGMTRDACVVFFKLLEIG-NFQSPYVYNPILWSLCKSDQISGALAFFCSLKKKGLVHNV 241

Query: 261 CSYTALLYGFGRECLW 276
           CSYTAL+YGFG++ L+
Sbjct: 242 CSYTALVYGFGQKGLF 256

[Close]
BLAST of Carg03892 vs. TrEMBL
Match: tr|A0A1U8B6S7|A0A1U8B6S7_NELNU (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104607632 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-45
Identity = 104/214 (48.60%), Postives = 141/214 (65.89%), Query Frame = 0 

Query: 50  LQSRMQNYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIG 109
           LQ +M++YA  G   EA +TLN MK V+GKP+VYDYNA  +  L SGN+S+E LV+V+  
Sbjct: 81  LQCKMKDYATYGLAQEAWDTLNDMKRVSGKPTVYDYNAFLYYNLKSGNLSIEDLVEVHGR 140

Query: 110 MKNFGPSPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGN 169
           M+  GPSPN  TFN LLNG LSLG L  A++F +EM ++G  PSF+ LSKLLKRS++ G+
Sbjct: 141 MRILGPSPNALTFNTLLNGSLSLGSLEGAFYFTKEMCRNGFVPSFSFLSKLLKRSLELGD 200

Query: 170 LVDSIWIFKFMLRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKN--LNFQAYVF 229
           LV S+   + ML LD+ PTEPT  + +    K+  + EA  F   L+S    L    + +
Sbjct: 201 LVYSLDALELMLDLDYFPTEPTSNLLVNSFIKSGKMHEA-CFLLSLLSDKCFLPSMHHSY 260

Query: 230 NPVLWALCKCGNSSLALQLFYMMKKNGIAHNVCS 262
           N ++WALCK G + +A  LF  +KK GI HNVC+
Sbjct: 261 NSIIWALCKSGQTCVASALFCSLKKRGIGHNVCT 293

[Close]
BLAST of Carg03892 vs. TrEMBL
Match: tr|A0A1U8AXZ9|A0A1U8AXZ9_NELNU (pentatricopeptide repeat-containing protein At1g09900-like isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607632 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.2e-44
Identity = 102/210 (48.57%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 54  MQNYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNF 113
           M++YA  G   EA +TLN MK V+GKP+VYDYNA  +  L SGN+S+E LV+V+  M+  
Sbjct: 1   MKDYATYGLAQEAWDTLNDMKRVSGKPTVYDYNAFLYYNLKSGNLSIEDLVEVHGRMRIL 60

Query: 114 GPSPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGINPSFTSLSKLLKRSMKSGNLVDS 173
           GPSPN  TFN LLNG LSLG L  A++F +EM ++G  PSF+ LSKLLKRS++ G+LV S
Sbjct: 61  GPSPNALTFNTLLNGSLSLGSLEGAFYFTKEMCRNGFVPSFSFLSKLLKRSLELGDLVYS 120

Query: 174 IWIFKFMLRLDHLPTEPTVAMFMCMLCKARMLEEAYSFCAKLISKN--LNFQAYVFNPVL 233
           +   + ML LD+ PTEPT  + +    K+  + EA  F   L+S    L    + +N ++
Sbjct: 121 LDALELMLDLDYFPTEPTSNLLVNSFIKSGKMHEA-CFLLSLLSDKCFLPSMHHSYNSII 180

Query: 234 WALCKCGNSSLALQLFYMMKKNGIAHNVCS 262
           WALCK G + +A  LF  +KK GI HNVC+
Sbjct: 181 WALCKSGQTCVASALFCSLKKRGIGHNVCT 209

[Close]
BLAST of Carg03892 vs. TrEMBL
Match: tr|A0A2P4K714|A0A2P4K714_QUESU (Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_25246 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-37
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 0 

Query: 1   MRFASIPAINYPHRLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAAS 60
           M   +IP + Y  R+ + +R   ++S+SCAL +V   E+S+T+++ Y  LQSRMQNYA S
Sbjct: 57  MLLCTIPRVGYCCRIGKTVRFLLSFSSSCALRAVEFAEESNTHDFNYAKLQSRMQNYAIS 116

Query: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120
           G   +ALETLN M+NV GKP+VYDYNAL + +L S NV LE LV+VY+GMK FGP+PN +
Sbjct: 117 GHFRKALETLNSMRNVPGKPTVYDYNALMYCHLKSRNVLLEVLVEVYVGMKRFGPAPNAS 176

Query: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKS 149
           TFN LLNG LSLG L+DA+F A+EM  S
Sbjct: 177 TFNTLLNGMLSLGNLKDAFFIAKEMCGS 204

[Close]
BLAST of Carg03892 vs. TrEMBL
Match: tr|A0A2N9F0T1|A0A2N9F0T1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12468 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 79/135 (58.52%), Postives = 100/135 (74.07%), Query Frame = 0 

Query: 14  RLTRKLRSSANYSTSCALSSVNIIEDSHTNNWKYLDLQSRMQNYAASGDLPEALETLNFM 73
           R+ + +R   N S+SCA+ + + IE+S+T++  Y++LQ RMQNYA SG   +ALE LN M
Sbjct: 8   RIGKTVRFLVNLSSSCAVRTADFIEESNTHHCNYVELQRRMQNYATSGHFSKALEALNSM 67

Query: 74  KNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRTTFNILLNGFLSLG 133
           +NV GKP+VYDYNAL H Y  S NV LE LV+VY+GMK FGP PN +TFN LLNG LSLG
Sbjct: 68  RNVHGKPTVYDYNALMHCYFKSRNVLLEVLVEVYLGMKRFGPVPNASTFNTLLNGMLSLG 127

Query: 134 YLRDAYFFAEEMTKS 149
            L+DA+F AEEM  S
Sbjct: 128 NLKDAFFIAEEMCGS 142


HSP 2 Score: 55.5 bits (132), Expect = 5.5e-04
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 596 LIQDMYKQRLDPDLFINGSKISGLCQEGNISTALFTRGRTLGNGLT-------LSMETCN 655
           LI++MY Q L PD +  GS ISGLC+EG IS AL  R + LGNGLT       ++ E  N
Sbjct: 505 LIREMYSQGLKPDGYTYGSLISGLCREGRISVALQLRDQMLGNGLTPGCQPDEVTFEILN 564

The following BLAST results are available for this feature:
BLAST of Carg03892 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023002254.11.4e-16394.33pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor... [more]
XP_022951234.18.5e-15893.29putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial is... [more]
XP_023537059.13.7e-15395.05pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp... [more]
XP_023522453.16.3e-15391.80pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isofor... [more]
XP_023002255.11.3e-13789.40pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isofor... [more]
BLAST of Carg03892 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20230.16.3e-0626.99Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G16880.18.3e-0632.50Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg03892 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LNU6|PPR53_ARATH1.1e-0426.99Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
sp|Q9ZVX5|PP156_ARATH1.5e-0432.50Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg03892 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A124SBS2|A0A124SBS2_CYNCS1.7e-4541.80Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006... [more]
tr|A0A1U8B6S7|A0A1U8B6S7_NELNU2.9e-4548.60pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor... [more]
tr|A0A1U8AXZ9|A0A1U8AXZ9_NELNU4.2e-4448.57pentatricopeptide repeat-containing protein At1g09900-like isoform X2 OS=Nelumbo... [more]
tr|A0A2P4K714|A0A2P4K714_QUESU1.3e-3756.08Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 G... [more]
tr|A0A2N9F0T1|A0A2N9F0T1_FAGSY1.2e-3558.52Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12468 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03892-RACarg03892-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 330..363
e-value: 1.5E-4
score: 19.7
coord: 470..504
e-value: 0.001
score: 17.1
coord: 400..433
e-value: 3.1E-7
score: 28.1
coord: 576..608
e-value: 1.4E-5
score: 22.9
coord: 295..328
e-value: 3.1E-7
score: 28.1
coord: 540..573
e-value: 9.4E-4
score: 17.2
coord: 435..457
e-value: 5.1E-4
score: 18.0
coord: 261..294
e-value: 6.8E-7
score: 27.1
coord: 226..258
e-value: 6.4E-4
score: 17.7
coord: 121..153
e-value: 0.0027
score: 15.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 79..127
e-value: 6.2E-6
score: 26.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 398..446
e-value: 1.3E-14
score: 54.0
coord: 292..340
e-value: 2.1E-15
score: 56.5
coord: 537..584
e-value: 1.0E-10
score: 41.5
coord: 226..270
e-value: 1.5E-8
score: 34.5
coord: 467..513
e-value: 1.4E-8
score: 34.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 538..572
score: 10.238
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 398..432
score: 11.575
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..117
score: 7.596
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 6.61
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 258..292
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 9.339
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 5.459
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 468..502
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 363..397
score: 8.243
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..152
score: 10.545
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 11.63
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 328..362
score: 9.799
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 503..537
score: 8.035
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 573..607
score: 10.358
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 6.489
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 608..642
score: 5.656
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 433..467
score: 8.396
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 546..665
e-value: 1.9E-14
score: 55.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 393..535
e-value: 2.4E-32
score: 114.5
coord: 48..228
e-value: 4.3E-28
score: 100.6
coord: 229..392
e-value: 1.5E-41
score: 144.8
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 58..255
coord: 243..340
coord: 279..458
coord: 467..661

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03892Cla022279Watermelon (97103) v1carwmB0978
Carg03892ClCG08G012890Watermelon (Charleston Gray)carwcgB0958
Carg03892CmaCh12G003020Cucurbita maxima (Rimu)carcmaB1349
Carg03892CmoCh12G002530Cucurbita moschata (Rifu)carcmoB1310
Carg03892Lsi08G011490Bottle gourd (USVL1VR-Ls)carlsiB898
Carg03892Cla97C08G156150Watermelon (97103) v2carwmbB1034
Carg03892Bhi04G000840Wax gourdcarwgoB1145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg03892Silver-seed gourdcarcarB071
Carg03892Silver-seed gourdcarcarB168
Carg03892Silver-seed gourdcarcarB239
Carg03892Silver-seed gourdcarcarB558
Carg03892Cucumber (Gy14) v2carcgybB0960
Carg03892Cucumber (Gy14) v2carcgybB0963
Carg03892Cucumber (Gy14) v2carcgybB0965
Carg03892Cucumber (Gy14) v1carcgyB1091
Carg03892Cucumber (Gy14) v1carcgyB1093
Carg03892Cucumber (Gy14) v1carcgyB1096
Carg03892Cucurbita maxima (Rimu)carcmaB1347
Carg03892Cucurbita maxima (Rimu)carcmaB1353
Carg03892Cucurbita maxima (Rimu)carcmaB1356
Carg03892Cucurbita maxima (Rimu)carcmaB1357
Carg03892Cucurbita moschata (Rifu)carcmoB1308
Carg03892Cucurbita moschata (Rifu)carcmoB1315
Carg03892Cucurbita moschata (Rifu)carcmoB1318
Carg03892Cucurbita moschata (Rifu)carcmoB1319
Carg03892Cucurbita pepo (Zucchini)carcpeB1351
Carg03892Cucurbita pepo (Zucchini)carcpeB1352
Carg03892Cucurbita pepo (Zucchini)carcpeB1363
Carg03892Cucurbita pepo (Zucchini)carcpeB1366
Carg03892Cucurbita pepo (Zucchini)carcpeB1368
Carg03892Cucurbita pepo (Zucchini)carcpeB1369
Carg03892Wild cucumber (PI 183967)carcpiB1010
Carg03892Wild cucumber (PI 183967)carcpiB1014
Carg03892Wild cucumber (PI 183967)carcpiB1016
Carg03892Cucumber (Chinese Long) v2carcuB0987
Carg03892Cucumber (Chinese Long) v2carcuB0990
Carg03892Cucumber (Chinese Long) v2carcuB0993
Carg03892Cucumber (Chinese Long) v3carcucB1015
Carg03892Cucumber (Chinese Long) v3carcucB1018
Carg03892Cucumber (Chinese Long) v3carcucB1021
Carg03892Melon (DHL92) v3.5.1carmeB0954
Carg03892Melon (DHL92) v3.5.1carmeB0955
Carg03892Melon (DHL92) v3.5.1carmeB0957
Carg03892Melon (DHL92) v3.6.1carmedB0960
Carg03892Melon (DHL92) v3.6.1carmedB0961
Carg03892Melon (DHL92) v3.6.1carmedB0963
Carg03892Watermelon (Charleston Gray)carwcgB0957
Carg03892Watermelon (Charleston Gray)carwcgB0955
Carg03892Watermelon (97103) v1carwmB0980
Carg03892Watermelon (97103) v1carwmB0982
Carg03892Watermelon (97103) v2carwmbB1031
Carg03892Watermelon (97103) v2carwmbB1033
Carg03892Wax gourdcarwgoB1151