Carg03782 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03782
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribonuclease P protein subunit p29
Location	Cucurbita_argyrosperma_scaffold_006 : 1847441 .. 1851118 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTAAACCCTATTTTCACACTTCCGCCACCGACGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGACTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCGCTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGTCTCATCTTTTCCGACTCCAAGGTCTGTTTTATCTGGGCATGTTATGTTAGTTTGTACATACACATACTGAGAAGAAAATCAAGAGTGTTTGTTTAAGTTCTTCATCACTGTAAGTTCAATCAGTCTAAATGAAAATAGATGAAATAGAAAAAAAGAAAAAAAAAAAGCAGGTTGACTGGGTGCCGTTGTGTTTGCTTGAATAAAGAAGAAACTGAGTAATATAGAAGAAATTACTGGGAGGCAATCTGATTCCATTATTTTCTTACATGTCTAAATTCAAAATCCTTCAAATTCGACCAATTTCGAAAGAATGGAGTAGCTGTTATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAACGATAGCCGAATAGCCACTATAGAAACAGCCCTGCGACAAATTTGAACTGCCATGTGCTACCCTCTGCCTTTTGATTTGTTGCATATTTAAGTCAATTGAGGCTTTGATAATCTGTATAACGCTTTGGTCTCTACGGAAAATTGGCTTGTCTCTAAGATCATGACTTTTCTGTCAACACAATTATCAATCAAAGTAGTGTTCATGGACCTCTACCTTTGTTTTCTTTGCATGTTTTTTCAAGTTCTATGTATTAAAAAAATCGTATATTGTTTCAGGAAGGGTTAATCAACTGCCCATGTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACTGGTTCTACAGAGAAATTAAAGAAAGAATTTAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCAGTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGGTCCCCTCGTCGTAACTATGGTTTTGATATTTTCGTTTGCTGGGAAGGCAGTATGTTTTAGTTTGCTTATTATTAGTTGATTTCTTTCATGTGCAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATGTCTACAAATATGGATGTAAGTTGGCATCACCGAAAACTTAAAAGGGCCTTTCAACATTTATAACTTGGTTCTCTGTTTCTTAAAAATTAAGCTTATAAATGTTATTTCATCCACACATTTGTATGTCTGCATCCAGCTTTTTAAAAGCAATTTCAACATCTTAGCAAAATTTTGAAAACTGAAAAAGGTAGTTTTTAAAAATCTGTTTTTGAGATTTAGTTAAGAAATTAAACGTGGTATGAAAAAGATGAAAAAATACACTAAAAATTGTGAGGAAATAAGCATCATTTTTAAAACATTAAACTGAAAAAGGAAACTGTTTATCAAACGAGAACTAATAAAACTCATACTGAATCTCACGTCTTCTGTAGGTTTCAAGTAATAGAGGAAGAGTGGTTGATAAGATTTGTCACGAGCTAAGAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGGAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTGAGTTCCACTTTTCTCCTTGGTTTAGATCTCTCATCACCATCTCCTTGCCCCATTTTATCCCATATAGGATTGAATAAGAAAATGATGCTGAATATGTCTGTTTATCTTGAAATTAGAATTAGAATTTAGTAGTTGATCATTCATCAAAAAAGAAATTTGGAAGGTTATTGAGTAAAGTCATGTTTGTTGCACTCCATTGAATGTTACGCATGTTCTTGATAAGCATCCATTGAAATGAGTTTTCTTCGGCTGCCACGATCATTTATGTTTGACAATGGATTATTTTGTTTGGAAAAAGGCTGATGAAAGTGTCTAATTCTCCTGAAATTAGAATTAGAATCTATTTGTTGGTTGTTATCCATCAAAACAGGATTAAGAAGGTTATTCATCAAAAGGGAATTAGAATCAATAGAGTTCTAAGTTTGTTCTTCATAAGCATCCCATTGAAATGGGTTTTCTTTTGCTGTCACTATCATTTATGTTTGACAATAAATTATTGTGCTTTCTATTTCAGGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGTTAGATTTTTACTTTTTGTTACATCAATGTTTCCGATATGTTATCTATGTCATTGGGTGATCAGAGTTTCAAATCTTGCAGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGGTAAAACCATTCTTTTTTCCTAATTGAATTGTTTGCATTCATATCATATTTATATAAATTCCTTGTTCATCAAATAAACCAATTTTCATACCACGAAAGAGAGCACAAAAAACAAGACCCAACCAACAAGAAGGCTACAGAAAGAAACAAAACAAGAACAGTTAGAGAATTTTGTTGACAAGAACCATTAAAATGGTTCTGTAATAAGAGCATGAGGTTTCATACTAGTGTTTCTCTATCTCATATTGGCTATTTTATCATTTGATGATATCCACTGCAGTTGTTGAGTGTAAAATACCTGCTTTTACTGGAATAAGCGGCATCATGATTCGTGAAACTGCAGAAACATTTGGAATTTTTACTAAAGATGAGAAGTTTCGAGGTAACTCCTCCTTATGAATCTTAAATCTGTTGCATTTTCTGTGATCAAAACCAATTAAGTTCTATGAATTTGGGCAAGTTTTTCTAACAAATGACCTTGAATGTTTCTTTATTTGGTGGTTTTGATCTTGCAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGTTGGAAAATTACCTTGCTCGGAGATAAACTCAGTTCAAGAATCCCCAGTTTGCCATCTAAAAATTGATTTCAGTCAATGATCTTCAATTATACAGTAATATTTACAGTGTACAGGTAATTCTCTGCTATTTAACCCATTAACAAAGGTTTTTTTTGGGGGGAGGGGGGGCTAAGTCAATAACAATTATTTATTTATCTTTTTTAAATTTTAAACTCAAATATAATATTTAATAGTTTTAATCATTAACTGTAGGAGTGGTGGTCCTTATGCAGAGCAAGATACAAGATCAACGAGAAGGGGTTGGTTCTCCATGTCCGGAGACCCAAACAGTAAGTGACACCGACACCCCAGATATTGGCATAAAGCCTACTTCGCATCTTCTTTCAATCAGAAGAATGAAGCCGCCGCGTTACACGGTGGTTCCGCCGTACGCGCTTCTCAGTCCACCGTGTCCTCTCCCTCCTCTCCCACGGTTCCTCCGCCG

mRNA sequence

TCTCTAAACCCTATTTTCACACTTCCGCCACCGACGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGACTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCGCTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGTCTCATCTTTTCCGACTCCAAGGAAGGGTTAATCAACTGCCCATGTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACTGGTTCTACAGAGAAATTAAAGAAAGAATTTAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCAGTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATGTCTACAAATATGGATGTTTCAAGTAATAGAGGAAGAGTGGTTGATAAGATTTGTCACGAGCTAAGAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGGAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGTTGTTGAGTGTAAAATACCTGCTTTTACTGGAATAAGCGGCATCATGATTCGTGAAACTGCAGAAACATTTGGAATTTTTACTAAAGATGAGAAGTTTCGAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGTTGGAAAATTACCTTGCTCGGAGATAAACTCAGTTCAAGAATCCCCAGTTTGCCATCTAAAAATTGATTTCAGTCAATGATCTTCAATTATACAGTAATATTTACAGTGTACAGCAAGATACAAGATCAACGAGAAGGGGTTGGTTCTCCATGTCCGGAGACCCAAACAGTAAGTGACACCGACACCCCAGATATTGGCATAAAGCCTACTTCGCATCTTCTTTCAATCAGAAGAATGAAGCCGCCGCGTTACACGGTGGTTCCGCCGTACGCGCTTCTCAGTCCACCGTGTCCTCTCCCTCCTCTCCCACGGTTCCTCCGCCG

Coding sequence (CDS)

TCTCTAAACCCTATTTTCACACTTCCGCCACCGACGAATCGCCACCGCCCCTCCTCTCCTTCTCATCAATTTATTTATTTTACCGGTTCGAACAAGACTATTTCACGTTACAGCCCCTCCCTCCCAGAGTCCGCCGCTGCACCTCTCTCACCGCGCCGCTCGCTGCTCGCCGATCCTGCTGGACATCGTCTCAGCGGCTGTCGTCTCATCTTTTCCGACTCCAAGGAAGGGTTAATCAACTGCCCATGTCCAATGGCGGGCAATGTAGCTTCTCAAGATTTAAGGAAACACGCTTTGGAGGCATTGGAGCGGAGGTGTGCTGCTGCGAAAGTCGAACTTCTTCAACAACAGAAGAAGACTGGTTCTACAGAGAAATTAAAGAAAGAATTTAAGGGAAAAGCTACTTTGAACGACTCCTCTTCAACTGTTGTTTCGGGAAATCAGTATGATTCTTCAATTCTTTTGCCGTCTGAAGGGAAACCCTCAAATAAAGATGTGAATGAAAGCGACCCTATATATTTCACCCTCTCAGCTGCTGTGAATGAAAATTTGATGTCTACAAATATGGATGTTTCAAGTAATAGAGGAAGAGTGGTTGATAAGATTTGTCACGAGCTAAGAACTAGCGGTTACATTAAGCGGTCAAGAGAATTGAAAGTTGATGCTTGGATCCTTCTTGATAACTTTGTTCCCAAACGTGCTGGAATGATTGGCTCTCGGAAGAGAGCTTTGCAGAGCAATTCAAAACGATCCAAAAGGCATATGTCCATGAAGCAACATAAAAAGTGTGGAACATTTGATCTGCCTTCTGATTTCCATAAGTTTGAAATCTTTTGGCCAATGCACGATATGTGGAAAAGCTACATGAAACAACGGCTGTGCCATGTTGGGCCAGATACATTAGCTCGAAATCTTCTCGTCGCAGATCTTCATGGTGCCATGATCCTAGTTGTTGAGTGTAAAATACCTGCTTTTACTGGAATAAGCGGCATCATGATTCGTGAAACTGCAGAAACATTTGGAATTTTTACTAAAGATGAGAAGTTTCGAGTTGTGCCAAAGAAGTCTTCTGTGTTTATTTTCCAATGGGATTGTTGGAAAATTACCTTGCTCGGAGATAAACTCAGTTCAAGAATCCCCAGTTTGCCATCTAAAAATTGA

Protein sequence

SLNPIFTLPPPTNRHRPSSPSHQFIYFTGSNKTISRYSPSLPESAAAPLSPRRSLLADPAGHRLSGCRLIFSDSKEGLINCPCPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVVSGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICHELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPSKN

Homology

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BLAST of Carg03782 vs. NCBI nr
Match: XP_023526523.1 (ribonuclease P protein subunit p29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 593.2 bits (1528), Expect = 6.4e-166
Identity = 298/302 (98.68%), Postives = 300/302 (99.34%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           SGN YDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSS+RGRVVDKICH
Sbjct: 61  SGNHYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSDRGRVVDKICH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG
Sbjct: 121 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTGISGIMIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS
Sbjct: 241 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 300

Query: 385 KN 387
           KN
Sbjct: 301 KN 302

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BLAST of Carg03782 vs. NCBI nr
Match: XP_022934539.1 (ribonuclease P protein subunit p29 [Cucurbita moschata])

HSP 1 Score: 592.0 bits (1525), Expect = 1.4e-165
Identity = 298/302 (98.68%), Postives = 299/302 (99.01%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLM TNMDVSSNRGRVVDKICH
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMFTNMDVSSNRGRVVDKICH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           ELRTSGYIKRSRELKVDAWILLDNFVPKRA MIGSRKRALQS+SKRSKRHMSMKQHKKCG
Sbjct: 121 ELRTSGYIKRSRELKVDAWILLDNFVPKRAEMIGSRKRALQSSSKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLV DLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVVDLHGAMILVVECKIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS
Sbjct: 241 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 300

Query: 385 KN 387
           KN
Sbjct: 301 KN 302

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BLAST of Carg03782 vs. NCBI nr
Match: XP_022983897.1 (uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983898.1 uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983899.1 uncharacterized protein LOC111482383 [Cucurbita maxima])

HSP 1 Score: 590.1 bits (1520), Expect = 5.4e-165
Identity = 296/302 (98.01%), Postives = 299/302 (99.01%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSS+VV
Sbjct: 1   MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSSVV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH
Sbjct: 61  SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           +LRTSGYIKRSRELKVDAWILLDNFVPKRAG IGSRKRALQSNSKRSKRHMSMKQHKKCG
Sbjct: 121 KLRTSGYIKRSRELKVDAWILLDNFVPKRAGKIGSRKRALQSNSKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA
Sbjct: 181 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTGISGIMIRETAETFGI TKD+KFRVVPKKSS FIFQWDCWKITLLGDKLSSRIPSLPS
Sbjct: 241 FTGISGIMIRETAETFGIVTKDDKFRVVPKKSSAFIFQWDCWKITLLGDKLSSRIPSLPS 300

Query: 385 KN 387
           KN
Sbjct: 301 KN 302

[Close]

BLAST of Carg03782 vs. NCBI nr
Match: XP_008442652.1 (PREDICTED: uncharacterized protein LOC103486457 isoform X1 [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 7.1e-141
Identity = 262/312 (83.97%), Postives = 281/312 (90.06%), Query Frame = 0


Query: 75  KEGLINCPCPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKA 134
           +EGLIN    M+   ASQDLRKHALEALERRCAAAKVELLQQQ K  STEK KKE KGK+
Sbjct: 4   QEGLINQQISMSDKKASQDLRKHALEALERRCAAAKVELLQQQ-KISSTEKSKKEVKGKS 63

Query: 135 TLNDSSSTVVSGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSN 194
           +LND +S VVS NQY+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE LM+++MDVS N
Sbjct: 64  SLNDPTS-VVSRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKN 123

Query: 195 RGRVVDKICHELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRH 254
           RGRVVDKICHEL+ SGY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRH
Sbjct: 124 RGRVVDKICHELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRH 183

Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAM 314
           MSMKQHKKCGTFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAM
Sbjct: 184 MSMKQHKKCGTFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAM 243

Query: 315 ILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDK 374
           I VVECKIPAFTG SG+MIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWK+TLLGDK
Sbjct: 244 IRVVECKIPAFTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDK 303

Query: 375 LSSRIPSLPSKN 387
           LSSRIPSLPS N
Sbjct: 304 LSSRIPSLPSSN 313

[Close]

BLAST of Carg03782 vs. NCBI nr
Match: XP_008442653.1 (PREDICTED: uncharacterized protein LOC103486457 isoform X2 [Cucumis melo] >XP_008442654.1 PREDICTED: uncharacterized protein LOC103486457 isoform X2 [Cucumis melo] >XP_008442655.1 PREDICTED: uncharacterized protein LOC103486457 isoform X2 [Cucumis melo] >XP_008442656.1 PREDICTED: uncharacterized protein LOC103486457 isoform X2 [Cucumis melo])

HSP 1 Score: 501.9 bits (1291), Expect = 1.9e-138
Identity = 257/302 (85.10%), Postives = 275/302 (91.06%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           M+   ASQDLRKHALEALERRCAAAKVELLQQQ K  STEK KKE KGK++LND +S VV
Sbjct: 1   MSDKKASQDLRKHALEALERRCAAAKVELLQQQ-KISSTEKSKKEVKGKSSLNDPTS-VV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           S NQY+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE LM+++MDVS NRGRVVDKICH
Sbjct: 61  SRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKNRGRVVDKICH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           EL+ SGY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRHMSMKQHKKCG
Sbjct: 121 ELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           TFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI VVECKIPA
Sbjct: 181 TFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMIRVVECKIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTG SG+MIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWK+TLLGDKLSSRIPSLPS
Sbjct: 241 FTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKLSSRIPSLPS 300

Query: 385 KN 387
            N
Sbjct: 301 SN 300

[Close]

BLAST of Carg03782 vs. TAIR10
Match: AT2G43190.1 (ribonuclease P family protein)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-60
Identity = 138/302 (45.70%), Postives = 180/302 (59.60%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           M       D  + A+ A+ERR A AK +L                       +D   ++ 
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQL--------XXXXXXXXXXXXXXTSDVDVSMK 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDP---IYFTLSAAVNENLMSTNMDVSSNRGRVVDK 204
             +Q DS   LP+  K S K V+  D     Y  LS  V+ENL++TN+  SS +G +VDK
Sbjct: 61  ESHQADS---LPTPSKTSIKKVDPKDDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDK 120

Query: 205 ICHELRTSG-----YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMS 264
           + H L  SG     Y++ ++ +K+D +ILLDNFV  R+   GS K+A Q +SKRSK  MS
Sbjct: 121 VLHNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS-KKASQKDSKRSKSRMS 180

Query: 265 MKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMIL 324
           MK+ KK G   +P D  KF++F PMH MW+SYM + +   G   L+  LL ADLHGA + 
Sbjct: 181 MKRLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMF 240

Query: 325 VVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLS 379
           V ECKI +FTG+ GIM+RET+ETFGI T+D+KFRVVPKK SVFI Q DCWKITL GDK  
Sbjct: 241 VAECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFI 290

[Close]

BLAST of Carg03782 vs. Swiss-Prot
Match: sp|Q2KIB9|RPP29_BOVIN (Ribonuclease P protein subunit p29 OS=Bos taurus OX=9913 GN=POP4 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-19
Identity = 46/157 (29.30%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 226 LDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCGTFDLPSDFHKFEIFWPMHDMW 285
           L++ + ++A ++       Q   ++  + +S KQ ++   FD+  +  ++ +F P+H++W
Sbjct: 47  LEDHLQRKAVVLEYFTHRKQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELW 106

Query: 286 KSYMKQRLCHVGPDT----LARNLLVADLHGAMILVVECKIPAFTGISGIMIRETAETFG 345
           K Y++     + PDT    +   LL ADLHGA++ V + K P++ G++GI+++ET   F 
Sbjct: 107 KQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFK 166

Query: 346 IFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 379
           I TK+++ +V+PK + VF  + D +   + G K   R
Sbjct: 167 IITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLR 203

[Close]

BLAST of Carg03782 vs. Swiss-Prot
Match: sp|Q5M882|RPP29_RAT (Ribonuclease P protein subunit p29 OS=Rattus norvegicus OX=10116 GN=Pop4 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-19
Identity = 45/135 (33.33%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT----LARNLLVADL 314
           +S KQ ++   FD+  +  ++ +F P+H++WK Y++     + PDT    +   LL ADL
Sbjct: 77  LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 136

Query: 315 HGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITL 374
           HGA+I V + K P++ G++GI+++ET   F I TK++  +V+PK++ VF  + D +   +
Sbjct: 137 HGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEIDDFISYI 196

Query: 375 LGDKLSSRIPSLPSK 386
            G K   R     +K
Sbjct: 197 YGSKFQLRASERSAK 211

[Close]

BLAST of Carg03782 vs. Swiss-Prot
Match: sp|O95707|RPP29_HUMAN (Ribonuclease P protein subunit p29 OS=Homo sapiens OX=9606 GN=POP4 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT----LARNLLVADL 314
           +S +Q ++   FD+  +  ++ +F P+H++WK Y++     + PDT    +   LL ADL
Sbjct: 76  LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADL 135

Query: 315 HGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITL 374
           HGA+I V + K P++ GI+GI+++ET   F I TK+++ +V+PK + VF  + D +   +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYI 195

Query: 375 LGDKLSSR 379
            G K   R
Sbjct: 196 YGSKFQLR 203

[Close]

BLAST of Carg03782 vs. Swiss-Prot
Match: sp|Q5R7B0|RPP29_PONAB (Ribonuclease P protein subunit p29 OS=Pongo abelii OX=9601 GN=POP4 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-18
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT----LARNLLVADL 314
           +S +Q ++   FD+  +  ++ +F P+H++WK Y++     + PDT    +   LL ADL
Sbjct: 76  LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135

Query: 315 HGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITL 374
           HGA+I V + K P++ GI+GI+++ET   F I TK+++ +V+PK + VF  + D +   +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195

Query: 375 LGDKLSSR 379
            G K   R
Sbjct: 196 YGSKFQLR 203

[Close]

BLAST of Carg03782 vs. Swiss-Prot
Match: sp|Q9CR08|RPP29_MOUSE (Ribonuclease P protein subunit p29 OS=Mus musculus OX=10090 GN=Pop4 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-18
Identity = 44/135 (32.59%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDT----LARNLLVADL 314
           +S KQ +    FD+  +  ++ +F P+H++WK Y++     + PDT    +   LL ADL
Sbjct: 77  LSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 136

Query: 315 HGAMILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITL 374
           HGA+I V + K P++ G++GI+++ET   F I T+++  +V+PK + VF  + D +   +
Sbjct: 137 HGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEIDDFISYI 196

Query: 375 LGDKLSSRIPSLPSK 386
            G K   R     +K
Sbjct: 197 YGSKFQLRASERSAK 211

[Close]

BLAST of Carg03782 vs. TrEMBL
Match: tr|A0A1S3B674|A0A1S3B674_CUCME (Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 4.7e-141
Identity = 262/312 (83.97%), Postives = 281/312 (90.06%), Query Frame = 0


Query: 75  KEGLINCPCPMAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKA 134
           +EGLIN    M+   ASQDLRKHALEALERRCAAAKVELLQQQ K  STEK KKE KGK+
Sbjct: 4   QEGLINQQISMSDKKASQDLRKHALEALERRCAAAKVELLQQQ-KISSTEKSKKEVKGKS 63

Query: 135 TLNDSSSTVVSGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSN 194
           +LND +S VVS NQY+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE LM+++MDVS N
Sbjct: 64  SLNDPTS-VVSRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKN 123

Query: 195 RGRVVDKICHELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRH 254
           RGRVVDKICHEL+ SGY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRH
Sbjct: 124 RGRVVDKICHELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRH 183

Query: 255 MSMKQHKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAM 314
           MSMKQHKKCGTFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAM
Sbjct: 184 MSMKQHKKCGTFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAM 243

Query: 315 ILVVECKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDK 374
           I VVECKIPAFTG SG+MIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWK+TLLGDK
Sbjct: 244 IRVVECKIPAFTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDK 303

Query: 375 LSSRIPSLPSKN 387
           LSSRIPSLPS N
Sbjct: 304 LSSRIPSLPSSN 313

[Close]

BLAST of Carg03782 vs. TrEMBL
Match: tr|A0A1S3B6Y6|A0A1S3B6Y6_CUCME (Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.3e-138
Identity = 257/302 (85.10%), Postives = 275/302 (91.06%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           M+   ASQDLRKHALEALERRCAAAKVELLQQQ K  STEK KKE KGK++LND +S VV
Sbjct: 1   MSDKKASQDLRKHALEALERRCAAAKVELLQQQ-KISSTEKSKKEVKGKSSLNDPTS-VV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           S NQY+SSI LPSEGKP NKDVNESDPIYFTLSAAVNE LM+++MDVS NRGRVVDKICH
Sbjct: 61  SRNQYNSSITLPSEGKPPNKDVNESDPIYFTLSAAVNEKLMASSMDVSKNRGRVVDKICH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           EL+ SGY+KRS+ELKVDA ILLDNFVPKRAGMIGSR R L+S SKRSKRHMSMKQHKKCG
Sbjct: 121 ELKNSGYMKRSKELKVDASILLDNFVPKRAGMIGSRMRDLRSISKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           TFDLPSD HK+EIFWPMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI VVECKIPA
Sbjct: 181 TFDLPSDCHKYEIFWPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMIRVVECKIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTG SG+MIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWK+TLLGDKLSSRIPSLPS
Sbjct: 241 FTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKLSSRIPSLPS 300

Query: 385 KN 387
            N
Sbjct: 301 SN 300

[Close]

BLAST of Carg03782 vs. TrEMBL
Match: tr|A0A0A0LDE6|A0A0A0LDE6_CUCSA (Ribonuclease P protein subunit p29 OS=Cucumis sativus OX=3659 GN=Csa_3G736870 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 2.9e-135
Identity = 253/302 (83.77%), Postives = 275/302 (91.06%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           MA N ASQDLRKHALEALERRCAAAKVELLQQQ K  STEK KKE +GK+ LN+S+S VV
Sbjct: 1   MADNKASQDLRKHALEALERRCAAAKVELLQQQ-KISSTEKSKKEVEGKSALNNSTS-VV 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           S NQY+SSI LPSEGKP  KDVNESDPIYFTLSAAVN+ LM+T+MDVS+NRGRV+D+I H
Sbjct: 61  SRNQYNSSIPLPSEGKPPYKDVNESDPIYFTLSAAVNDKLMATSMDVSNNRGRVIDRIYH 120

Query: 205 ELRTSGYIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 264
           +L+TSGY+KRS+ELKVDA+ILLDNFVPKRAGMIGSR RAL+SNSKRSKRHMSMKQHKKCG
Sbjct: 121 KLKTSGYVKRSKELKVDAYILLDNFVPKRAGMIGSRMRALRSNSKRSKRHMSMKQHKKCG 180

Query: 265 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 324
           T DLPSD  KFEIF PMHDMWKSYMKQRL +VGPD LARNLL+ADLHGAMI VVEC IPA
Sbjct: 181 TLDLPSDCRKFEIFLPMHDMWKSYMKQRLHNVGPDALARNLLIADLHGAMIRVVECIIPA 240

Query: 325 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSRIPSLPS 384
           FTG SG+MIRETAETFGI TKD+KFRVVPKKSSVFIFQWDCWK+TLLGDKLSSRIPSLPS
Sbjct: 241 FTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVTLLGDKLSSRIPSLPS 300

Query: 385 KN 387
            N
Sbjct: 301 TN 300

[Close]

BLAST of Carg03782 vs. TrEMBL
Match: tr|A0A2N9F1B7|A0A2N9F1B7_FAGSY (Ribonuclease P protein subunit p29 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12669 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.1e-79
Identity = 166/299 (55.52%), Postives = 210/299 (70.23%), Query Frame = 0


Query: 85  MAGNVASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVV 144
           MA +   QD RKHALEAL+RR A  + +LLQQ+K     +K   E  GK     +S    
Sbjct: 1   MATDTVLQDPRKHALEALKRRFAFVEADLLQQKK----NKKSLNEGDGKEPHRTTSFVAP 60

Query: 145 SGNQYDSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICH 204
           S ++ D+++  PS      K   E+ P Y  LS  V+ENL++TN+ VSS +G  VDKI H
Sbjct: 61  SADKTDAAV-TPSFDAQPKKGPEENAPEYLQLSQVVHENLLATNIKVSSRKGDKVDKILH 120

Query: 205 ELRTSG-----YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQ 264
           EL  +G     Y+++SR++ +D WILLDN+V  R    GS  RAL+ +SKRSK+HMSMKQ
Sbjct: 121 ELLQNGDSRQKYMQKSRKINIDNWILLDNYVQGRGVSTGSHIRALRMHSKRSKKHMSMKQ 180

Query: 265 HKKCGTFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVE 324
           HKKCG+FDLP + HKF++F PMH+MWK YM Q L  +G + LA+ LL ADLHGA+ILV E
Sbjct: 181 HKKCGSFDLPQELHKFDVFRPMHEMWKGYMMQLLKTIGKNQLAQCLLNADLHGAIILVAE 240

Query: 325 CKIPAFTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 379
           CK+ +FTG+SGIMIRETAETFGI TKD+ FRVVPKK SVFIFQ DCWK+TL GDKL+SR
Sbjct: 241 CKVTSFTGVSGIMIRETAETFGIVTKDDVFRVVPKKMSVFIFQVDCWKVTLHGDKLTSR 294

[Close]

BLAST of Carg03782 vs. TrEMBL
Match: tr|A0A2P4LIQ7|A0A2P4LIQ7_QUESU (Ribonuclease p protein subunit p29 OS=Quercus suber OX=58331 GN=CFP56_05760 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 163/294 (55.44%), Postives = 203/294 (69.05%), Query Frame = 0


Query: 90  ASQDLRKHALEALERRCAAAKVELLQQQKKTGSTEKLKKEFKGKATLNDSSSTVVSGNQY 149
           A QD RKHALEAL+RR A  + +LLQQ+ K    E  +KE     +L D +   V+    
Sbjct: 71  AIQDPRKHALEALKRRFAFVEADLLQQKNKKSIKEGDRKEPHRTTSLADKTDAAVT---- 130

Query: 150 DSSILLPSEGKPSNKDVNESDPIYFTLSAAVNENLMSTNMDVSSNRGRVVDKICHELRTS 209
                 PS      KD  E+ P Y  LS AV+ENL+++N+ +SS +G +VDKI HEL  +
Sbjct: 131 ------PSFDAQHKKDPEENAPAYLQLSQAVHENLLASNIKLSSRKGDMVDKILHELLQN 190

Query: 210 G-----YIKRSRELKVDAWILLDNFVPKRAGMIGSRKRALQSNSKRSKRHMSMKQHKKCG 269
           G     Y ++SR++ +D +ILLDN+V  R    GS  RAL+ +SKRSK+HMSMKQHKKCG
Sbjct: 191 GDMAQKYTQKSRKIHIDHFILLDNYVQGRGVTTGSHIRALRMHSKRSKKHMSMKQHKKCG 250

Query: 270 TFDLPSDFHKFEIFWPMHDMWKSYMKQRLCHVGPDTLARNLLVADLHGAMILVVECKIPA 329
           +FDLP + HKF +F PMH+MWK YM Q L  VG + LA+ LL ADLHGA ILV ECK  +
Sbjct: 251 SFDLPQELHKFAVFRPMHEMWKGYMMQLLKTVGKNQLAQCLLSADLHGAFILVAECKATS 310

Query: 330 FTGISGIMIRETAETFGIFTKDEKFRVVPKKSSVFIFQWDCWKITLLGDKLSSR 379
           FTG+SGIMIRETAETFGI T+D+ FRVVPKK SVFIFQ DCWK+TL GDKL+SR
Sbjct: 311 FTGVSGIMIRETAETFGIITQDDVFRVVPKKISVFIFQVDCWKVTLHGDKLTSR 354

The following BLAST results are available for this feature:

BLAST of Carg03782 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526523.1	6.4e-166	98.68	ribonuclease P protein subunit p29 [Cucurbita pepo subsp. pepo]	[more]
XP_022934539.1	1.4e-165	98.68	ribonuclease P protein subunit p29 [Cucurbita moschata]	[more]
XP_022983897.1	5.4e-165	98.01	uncharacterized protein LOC111482383 [Cucurbita maxima] >XP_022983898.1 uncharac...	[more]
XP_008442652.1	7.1e-141	83.97	PREDICTED: uncharacterized protein LOC103486457 isoform X1 [Cucumis melo]	[more]
XP_008442653.1	1.9e-138	85.10	PREDICTED: uncharacterized protein LOC103486457 isoform X2 [Cucumis melo] >XP_00...	[more]

BLAST of Carg03782 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43190.1	1.2e-60	45.70	ribonuclease P family protein	[more]

BLAST of Carg03782 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2KIB9\|RPP29_BOVIN	3.6e-19	29.30	Ribonuclease P protein subunit p29 OS=Bos taurus OX=9913 GN=POP4 PE=2 SV=1	[more]
sp\|Q5M882\|RPP29_RAT	6.1e-19	33.33	Ribonuclease P protein subunit p29 OS=Rattus norvegicus OX=10116 GN=Pop4 PE=2 SV...	[more]
sp\|O95707\|RPP29_HUMAN	1.4e-18	34.38	Ribonuclease P protein subunit p29 OS=Homo sapiens OX=9606 GN=POP4 PE=1 SV=2	[more]
sp\|Q5R7B0\|RPP29_PONAB	3.0e-18	34.38	Ribonuclease P protein subunit p29 OS=Pongo abelii OX=9601 GN=POP4 PE=2 SV=1	[more]
sp\|Q9CR08\|RPP29_MOUSE	5.2e-18	32.59	Ribonuclease P protein subunit p29 OS=Mus musculus OX=10090 GN=Pop4 PE=2 SV=1	[more]

BLAST of Carg03782 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B674\|A0A1S3B674_CUCME	4.7e-141	83.97	Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=4 ...	[more]
tr\|A0A1S3B6Y6\|A0A1S3B6Y6_CUCME	1.3e-138	85.10	Ribonuclease P protein subunit p29 OS=Cucumis melo OX=3656 GN=LOC103486457 PE=4 ...	[more]
tr\|A0A0A0LDE6\|A0A0A0LDE6_CUCSA	2.9e-135	83.77	Ribonuclease P protein subunit p29 OS=Cucumis sativus OX=3659 GN=Csa_3G736870 PE...	[more]
tr\|A0A2N9F1B7\|A0A2N9F1B7_FAGSY	5.1e-79	55.52	Ribonuclease P protein subunit p29 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12669...	[more]
tr\|A0A2P4LIQ7\|A0A2P4LIQ7_QUESU	1.4e-76	55.44	Ribonuclease p protein subunit p29 OS=Quercus suber OX=58331 GN=CFP56_05760 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0008033	tRNA processing
GO:0006396	RNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0030677	ribonuclease P complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0004540	ribonuclease activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023534	Rof/RNase_P-like
IPR036980	RNase_P/MRP_p29_sf
IPR002730	RNase_P/MRP_p29

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0008033	tRNA processing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030677	ribonuclease P complex
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03782-RA	Carg03782-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR13348	RIBONUCLEASE P SUBUNIT P29	coord: 164..378
IPR002730	Ribonuclease P/MRP, subunit p29	SMART	SM00538	pop4_2	coord: 299..382 e-value: 9.4E-11 score: 51.7
IPR002730	Ribonuclease P/MRP, subunit p29	PFAM	PF01868	UPF0086	coord: 304..378 e-value: 1.5E-18 score: 66.4
IPR036980	Ribonuclease P/MRP, subunit p29 superfamily	GENE3D	G3DSA:2.30.30.210		coord: 290..381 e-value: 7.2E-14 score: 53.2
IPR023534	Rof/RNase P-like	SUPERFAMILY	SSF101744	Rof/RNase P subunit-like	coord: 308..378

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03782	Cla017840	Watermelon (97103) v1	carwmB0237
Carg03782	Csa3G736870	Cucumber (Chinese Long) v2	carcuB0277
Carg03782	MELO3C009318	Melon (DHL92) v3.5.1	carmeB0251
Carg03782	ClCG10G020530	Watermelon (Charleston Gray)	carwcgB0240
Carg03782	CSPI03G32970	Wild cucumber (PI 183967)	carcpiB0281
Carg03782	Cucsa.307120	Cucumber (Gy14) v1	carcgyB0295
Carg03782	CmoCh14G001850	Cucurbita moschata (Rifu)	carcmoB0347
Carg03782	Lsi03G020510	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03782	Cp4.1LG03g01840	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03782	CsGy3G030720	Cucumber (Gy14) v2	carcgybB0263
Carg03782	MELO3C009318.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03782	CsaV3_3G035590	Cucumber (Chinese Long) v3	carcucB0279
Carg03782	Cla97C10G203730	Watermelon (97103) v2	carwmbB0254
Carg03782	Bhi11G001805	Wax gourd	carwgoB0316

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None