Carg03738 (gene) Silver-seed gourd

Overview
NameCarg03738
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_006 : 1647705 .. 1649048 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGGCAAGCTTTATTCATTTTTTATTGTTATTATCTTGCTGCTTCTTTGCAATTGGATTGATTATACTCTTCATTTGGCCATTTATTGCATTTGTTCATTGATAATCTAAGCCTGATAGTGTAACGGCCTAACCCCACTACTACCGGATATTGTTCTCTTTGAGCTTTCCTTCAAGATTTTTAAAACGCCTCTACTAAGAAGAGGTTACATTCTCCACTACTTATAAAGAATGTTTCATTCTCCTTCACAACTGATGTGAGATCAATTGACTCCAGGTTAAGTAAGAATTGGTAATTGGAAAGGGTCAGTCTTTCCGAGTAGCCTCAAAATTTGAAGTGTTGTTAGTAATTCGGTGGATGTGTTCCTTATTGTTTGTTTTTATACTACAAAACAGAGATTGTGTTAATTAGCTCCTTTTCTGCCATTTGTTTCAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGGTATGGCTTTGTAGTTTATACGACCTCTTTGGTATCTGTTGAAGATGAGATTTCTTGGATATTAGCGGGTGCAACCTTTTGATAAAAAGTACCAATATCTTCTGTTTGCAGCTGAACCATATGAAATAATTGCATTTGTTCAAGGTATTATAGTCATATGAGATAATTGCATTCAAGGGATTATATCTTTGGATTTACAGCTGATCTTTAACTTTTCTATGAATGAGTACTTTTTGTTTTTAATCTTTTTAGTTTAATCTTGTTAACAACAAAGTAAATGGCTTCCAACTTTCAAGCAAACTTTTAACTTTTTATATTCAACATGAAAATTTGCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTTCACCCCAGCAAGGTGTACCACCAAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

mRNA sequence

ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCCCACAAGCGGAAGTTTAATCTTGTTAACAACAAATTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTTCACCCCAGCAAGGTGTACCACCAAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

Coding sequence (CDS)

ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCCCACAAGCGGAAGTTTAATCTTGTTAACAACAAATTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTTCACCCCAGCAAGGTGTACCACCAAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

Protein sequence

MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPHKRKFNLVNNKLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPSPQQGVPPRVPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPPPPPPNMG
Homology
[Close]
BLAST of Carg03738 vs. NCBI nr
Match: XP_022934763.1 (formin-like protein 20 isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 53/85 (62.35%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 1  MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPHKRKFNLVNN--------------- 60
          MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPHKRK ++                  
Sbjct: 1  MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPHKRKVSIRKTVKIGRPGYRVTKQFD 60

[Close]
BLAST of Carg03738 vs. NCBI nr
Match: XP_022934764.1 (formin-like protein 20 isoform X2 [Cucurbita moschata])

HSP 1 Score: 76.6 bits (187), Expect = 8.6e-11
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 7  RIRRGSGIRLILAKRAAHEAKEASAQPQPHKRKFNLVNN--------------------- 61
          R+ RGSGIRLILAKRAAHEAKEASAQPQPHKRK ++                        
Sbjct: 4  RLGRGSGIRLILAKRAAHEAKEASAQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQR 63

The following BLAST results are available for this feature:
BLAST of Carg03738 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934763.11.2e-1562.35formin-like protein 20 isoform X1 [Cucurbita moschata][more]
XP_022934764.18.6e-1156.96formin-like protein 20 isoform X2 [Cucurbita moschata][more]
BLAST of Carg03738 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg03738 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03738 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03738-RACarg03738-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..166
NoneNo IPR availablePANTHERPTHR23205:SF2SUBFAMILY NOT NAMEDcoord: 47..159
coord: 17..42
NoneNo IPR availablePANTHERPTHR23205SPLICING FACTOR 3A SUBUNIT 2coord: 47..159
coord: 17..42

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03738CmoCh14G002290Cucurbita moschata (Rifu)carcmoB0347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg03738Silver-seed gourdcarcarB180
Carg03738Silver-seed gourdcarcarB276
Carg03738Silver-seed gourdcarcarB287
Carg03738Silver-seed gourdcarcarB295
Carg03738Cucumber (Gy14) v2carcgybB0263
Carg03738Cucumber (Gy14) v2carcgybB0264
Carg03738Cucumber (Gy14) v2carcgybB0265
Carg03738Cucumber (Gy14) v1carcgyB0292
Carg03738Cucumber (Gy14) v1carcgyB0295
Carg03738Cucumber (Gy14) v1carcgyB0299
Carg03738Cucurbita maxima (Rimu)carcmaB0343
Carg03738Cucurbita maxima (Rimu)carcmaB0346
Carg03738Cucurbita maxima (Rimu)carcmaB0348
Carg03738Cucurbita maxima (Rimu)carcmaB0350
Carg03738Cucurbita maxima (Rimu)carcmaB0351
Carg03738Cucurbita moschata (Rifu)carcmoB0349
Carg03738Cucurbita moschata (Rifu)carcmoB0351
Carg03738Cucurbita moschata (Rifu)carcmoB0352
Carg03738Cucurbita pepo (Zucchini)carcpeB0348
Carg03738Cucurbita pepo (Zucchini)carcpeB0351
Carg03738Cucurbita pepo (Zucchini)carcpeB0353
Carg03738Cucurbita pepo (Zucchini)carcpeB0354
Carg03738Wild cucumber (PI 183967)carcpiB0281
Carg03738Wild cucumber (PI 183967)carcpiB0282
Carg03738Wild cucumber (PI 183967)carcpiB0283
Carg03738Cucumber (Chinese Long) v2carcuB0277
Carg03738Cucumber (Chinese Long) v2carcuB0278
Carg03738Cucumber (Chinese Long) v2carcuB0279
Carg03738Cucumber (Chinese Long) v3carcucB0279
Carg03738Cucumber (Chinese Long) v3carcucB0280
Carg03738Cucumber (Chinese Long) v3carcucB0281
Carg03738Bottle gourd (USVL1VR-Ls)carlsiB222
Carg03738Bottle gourd (USVL1VR-Ls)carlsiB223
Carg03738Bottle gourd (USVL1VR-Ls)carlsiB225
Carg03738Melon (DHL92) v3.5.1carmeB0250
Carg03738Melon (DHL92) v3.5.1carmeB0251
Carg03738Melon (DHL92) v3.5.1carmeB0253
Carg03738Melon (DHL92) v3.6.1carmedB0260
Carg03738Melon (DHL92) v3.6.1carmedB0261
Carg03738Melon (DHL92) v3.6.1carmedB0263
Carg03738Watermelon (Charleston Gray)carwcgB0240
Carg03738Watermelon (Charleston Gray)carwcgB0241
Carg03738Watermelon (Charleston Gray)carwcgB0242
Carg03738Watermelon (97103) v1carwmB0237
Carg03738Watermelon (97103) v1carwmB0238
Carg03738Watermelon (97103) v1carwmB0239
Carg03738Watermelon (97103) v2carwmbB0254
Carg03738Watermelon (97103) v2carwmbB0255
Carg03738Watermelon (97103) v2carwmbB0256
Carg03738Watermelon (97103) v2carwmbB0257
Carg03738Wax gourdcarwgoB0316
Carg03738Wax gourdcarwgoB0326
Carg03738Wax gourdcarwgoB0327
Carg03738Wax gourdcarwgoB0329