Carg03633 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03633
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerase subunit beta like
Location	Cucurbita_argyrosperma_scaffold_006 : 1126523 .. 1127287 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGACCGCTGGAGGCGTTTCGTTCCCGATTGTTTTCCACGACGGCGAGCAAGATGTCCCCATCGGTTCCGTCATCGTTTCTTCTTCGACAGATTTCAAGAATTTTCAGTCGGATTTGAGTAAGATGATCGGCATCTCTTCGCACCAATTCACGGTTTACCTCGCCGAGTACAAGATCTCTCTGGATTTCTCGACGAAGATTCGGCGGAGAATCCCCATCACCGGGAAGGTCAACTTCGGCGCAATTTCCTGCGAGAAGAACAGCTTCTTTCTTGTTGTTTTGAAACGTTCGAGACGCGAGAGGAGGCGGAAGGTCACCGACAACAACGAAGACGAATACTACCTCCCGTCAGCGACGAAGACGAAGGCAAAGACGAATCAACCGAATAAGAAGAATCCACCGGAGAATGTGATGCTGTTGAGACGAAACGCTGGCATTGAAAACAAAATGCTCTCCGGCTTCATCTCGCCGGCGATGGACCGATACGATTACGAAGAGCGAATTCGGAAGCTGCAATTGGAGAGGGAAAACTACTCAACGAGCGTAGGGGTAAGGAATCTGACGGCGGGCGGAGACGGAGACGGTAGCTGGAACGGTAGTGTGAAATCGAAGACGACGGCCTGCCGTGACTGCCTGAGTGCGAAAGAGACCGGGGCGGCAGTCGGATTTCACTGCTGCGCCAACGATGCCGTGACGGCGGGATTCCGGTCGCATGCTGGTCCGATAGCCCGACCCATAAAAGAATCCGAGCCGAATTAG

mRNA sequence

ATGGTGGAGACCGCTGGAGGCGTTTCGTTCCCGATTGTTTTCCACGACGGCGAGCAAGATGTCCCCATCGGTTCCGTCATCGTTTCTTCTTCGACAGATTTCAAGAATTTTCAGTCGGATTTGAGTAAGATGATCGGCATCTCTTCGCACCAATTCACGGTTTACCTCGCCGAGTACAAGATCTCTCTGGATTTCTCGACGAAGATTCGGCGGAGAATCCCCATCACCGGGAAGGTCAACTTCGGCGCAATTTCCTGCGAGAAGAACAGCTTCTTTCTTGTTGTTTTGAAACGTTCGAGACGCGAGAGGAGGCGGAAGGTCACCGACAACAACGAAGACGAATACTACCTCCCGTCAGCGACGAAGACGAAGGCAAAGACGAATCAACCGAATAAGAAGAATCCACCGGAGAATGTGATGCTGTTGAGACGAAACGCTGGCATTGAAAACAAAATGCTCTCCGGCTTCATCTCGCCGGCGATGGACCGATACGATTACGAAGAGCGAATTCGGAAGCTGCAATTGGAGAGGGAAAACTACTCAACGAGCGTAGGGGTAAGGAATCTGACGGCGGGCGGAGACGGAGACGGTAGCTGGAACGGTAGTGTGAAATCGAAGACGACGGCCTGCCGTGACTGCCTGAGTGCGAAAGAGACCGGGGCGGCAGTCGGATTTCACTGCTGCGCCAACGATGCCGTGACGGCGGGATTCCGGTCGCATGCTGGTCCGATAGCCCGACCCATAAAAGAATCCGAGCCGAATTAG

Coding sequence (CDS)

ATGGTGGAGACCGCTGGAGGCGTTTCGTTCCCGATTGTTTTCCACGACGGCGAGCAAGATGTCCCCATCGGTTCCGTCATCGTTTCTTCTTCGACAGATTTCAAGAATTTTCAGTCGGATTTGAGTAAGATGATCGGCATCTCTTCGCACCAATTCACGGTTTACCTCGCCGAGTACAAGATCTCTCTGGATTTCTCGACGAAGATTCGGCGGAGAATCCCCATCACCGGGAAGGTCAACTTCGGCGCAATTTCCTGCGAGAAGAACAGCTTCTTTCTTGTTGTTTTGAAACGTTCGAGACGCGAGAGGAGGCGGAAGGTCACCGACAACAACGAAGACGAATACTACCTCCCGTCAGCGACGAAGACGAAGGCAAAGACGAATCAACCGAATAAGAAGAATCCACCGGAGAATGTGATGCTGTTGAGACGAAACGCTGGCATTGAAAACAAAATGCTCTCCGGCTTCATCTCGCCGGCGATGGACCGATACGATTACGAAGAGCGAATTCGGAAGCTGCAATTGGAGAGGGAAAACTACTCAACGAGCGTAGGGGTAAGGAATCTGACGGCGGGCGGAGACGGAGACGGTAGCTGGAACGGTAGTGTGAAATCGAAGACGACGGCCTGCCGTGACTGCCTGAGTGCGAAAGAGACCGGGGCGGCAGTCGGATTTCACTGCTGCGCCAACGATGCCGTGACGGCGGGATTCCGGTCGCATGCTGGTCCGATAGCCCGACCCATAAAAGAATCCGAGCCGAATTAG

Protein sequence

MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYKISLDFSTKIRRRIPITGKVNFGAISCEKNSFFLVVLKRSRRERRRKVTDNNEDEYYLPSATKTKAKTNQPNKKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLERENYSTSVGVRNLTAGGDGDGSWNGSVKSKTTACRDCLSAKETGAAVGFHCCANDAVTAGFRSHAGPIARPIKESEPN

Homology

[Close]

BLAST of Carg03633 vs. NCBI nr
Match: KGN59202.1 (hypothetical protein Csa_3G780540 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 1.5e-70
Identity = 182/252 (72.22%), Postives = 195/252 (77.38%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           M ET  GVSFPIVFHDGE+D  IGSVIVSSST+FKNFQS LSKMIGISSHQFTVYLAEYK
Sbjct: 1   MAETVEGVSFPIVFHDGERDTNIGSVIVSSSTEFKNFQSSLSKMIGISSHQFTVYLAEYK 60

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ISLD STKIRRRIPITGKVNFGAIS EKN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ISLDSSTKIRRRIPITGKVNFGAISGEKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 TKTKAKTNQPNKKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLERENY 180
                                      IEN++L+GFISP MDRY+YE+RIRKLQLE+E Y
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXIENELLAGFISPVMDRYEYEDRIRKLQLEKEKY 180

Query: 181 STSVGVRNLTAGGDGDGSWNGSVKSKTTACRDCLSAKETGAAVGFHCCANDAVTAGFRSH 240
             S+ + NL  G  GDG  N S +S+   C DCLSAKE G A GFHCCANDAVTAGFRSH
Sbjct: 181 LMSIQMSNLRMGDGGDGGRNKSGRSERRICGDCLSAKERGVAAGFHCCANDAVTAGFRSH 240

Query: 241 AGPIARPIKESE 253
           AGPIARP+KESE
Sbjct: 241 AGPIARPVKESE 252

[Close]

BLAST of Carg03633 vs. NCBI nr
Match: PON97422.1 (hypothetical protein TorRG33x02_068890 [Trema orientalis])

HSP 1 Score: 167.2 bits (422), Expect = 7.4e-38
Identity = 115/263 (43.73%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 1   MVE-TAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEY 60
           MVE  AGGVSFPIVF DGE +  IGSV V  + DFK FQS LS+ IGIS HQF+VYL+  
Sbjct: 1   MVEIAAGGVSFPIVFFDGESETDIGSVAVFPTLDFKRFQSVLSRKIGISPHQFSVYLS-- 60

Query: 61  KISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 S + R+RIPITGKVNFGAIS EK                               
Sbjct: 61  ------SPETRKRIPITGKVNFGAISSEKGCFFVVVLKRSKRDRRRRSLTHQNLPEDLYY 120

Query: 121 XTK--TKAKTNQPNKKNPPENVMLLRRNAGIENKMLS--GFISPAMDRYDYEERIRKLQL 180
            +     A  ++P KK PPENV LLRR+  I +   S  GF+SP  DR  Y  ++R  QL
Sbjct: 121 ASSPAPAANPHRPIKKAPPENVTLLRRDMVIAHHDQSSYGFLSPFSDRVGYAPQVRNYQL 180

Query: 181 ERENYS--TSVGVRNLTAGG-------DGDGSWNGSVKSKTTACRDCLSAKETGAAVGFH 240
           E++ Y    ++G+  L           D + S  G     +  C DCL A+E+G  VGFH
Sbjct: 181 EKQRYEYLMNMGLNGLGRDSTEPIKAVDDEESVRGG--GGSAVCEDCLRAEESGTEVGFH 240

Query: 241 CCANDAVTAGFRSHAGPIARPIK 250
            C  D VT GFRS  GPIARP K
Sbjct: 241 WCVYDPVTFGFRSAVGPIARPFK 253

[Close]

BLAST of Carg03633 vs. NCBI nr
Match: EXB38191.1 (hypothetical protein L484_004096 [Morus notabilis])

HSP 1 Score: 163.7 bits (413), Expect = 8.2e-37
Identity = 131/254 (51.57%), Postives = 161/254 (63.39%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           MVE  GGVSFP+VF DGE +  IGS+ V ++ +FK FQ+ LS+ IGIS HQF+V+L+   
Sbjct: 1   MVEIPGGVSFPVVFFDGEHETEIGSIAVYAAMEFKRFQALLSQKIGISPHQFSVHLS--- 60

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                S +  R+IPITGKVNFGAI C +    XXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 61  -----SPESCRKIPITGKVNFGAI-CREKGCFXXXXXXXXXXXXXXXXXXXXXXXXXXVI 120

Query: 121 TKTKAKTNQPNKKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLERENY 180
               A  +    KNPP NVMLLRR+A ++ +     +SP+ DR +YE R+  LQLERE Y
Sbjct: 121 LYPNADHSPMINKNPPPNVMLLRRDASVDCR-----VSPSSDRVEYENRVLNLQLEREMY 180

Query: 181 STSVGVRNLTAGGDGDGSWNGSVKSKTTA--CRDCLSAKETGAAVGFHCCANDAVTAGFR 240
             ++G+  L           G   ++T A  C DC+ AKE G   GFH C  DAVT  FR
Sbjct: 181 LVNMGLSGL-----------GREPNETAAPVCGDCVRAKELGQEAGFHWCVYDAVTFSFR 229

Query: 241 SHAGPIARPIKESE 253
             AGPIARP +  E
Sbjct: 241 PPAGPIARPFRRPE 229

[Close]

BLAST of Carg03633 vs. NCBI nr
Match: PON43331.1 (hypothetical protein PanWU01x14_275290 [Parasponia andersonii])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 118/261 (45.21%), Postives = 140/261 (53.64%), Query Frame = 0


Query: 1   MVETA-GGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEY 60
           MVE A GGVSFPIVF DGE +  IGS  VS + DFK FQS LS+ IGIS HQF+VYL+  
Sbjct: 1   MVEIAGGGVSFPIVFFDGESETDIGSFAVSPTLDFKRFQSVLSRKIGISPHQFSVYLS-- 60

Query: 61  KISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 S + R+RIPITGK NFGAIS EK           XXXXXX              
Sbjct: 61  ------SPETRKRIPITGKFNFGAISSEKGCFFVVVLKRSXXXXXXRSLTHQNLPEDLYY 120

Query: 121 XTK--TKAKTNQPNKKNPPENVMLLRRNAGI--ENKMLSGFISPAMDRYDYEERIRKLQL 180
            +   T A  ++  KK PPENV LLRR+  I   ++ L GF+SP  DR  Y  + R  QL
Sbjct: 121 SSSPATAANPHRSIKKAPPENVTLLRRDMVIAHNDQSLYGFLSPFSDRVGYAPQGRNYQL 180

Query: 181 ERENYSTSVGVRNLTAGGDGDGSWNGSVKSKT-------TACRDCLSAKETGAAVGFHCC 240
           E++ Y   + +     G D           K+         C DCL A+E+G  VGFH C
Sbjct: 181 EKQRYEYLMNMDLSGLGRDSTKPIKAVDDEKSVRGGGGLAVCEDCLRAEESGTEVGFHWC 240

Query: 241 ANDAVTAGFRSHAGPIARPIK 250
             D VT GFRS  GPIARP K
Sbjct: 241 VYDPVTFGFRSAVGPIARPFK 253

[Close]

BLAST of Carg03633 vs. NCBI nr
Match: XP_012485744.1 (PREDICTED: uncharacterized protein LOC105799623 [Gossypium raimondii] >KJB36276.1 hypothetical protein B456_006G149800 [Gossypium raimondii])

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-33
Identity = 95/254 (37.40%), Postives = 130/254 (51.18%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           +V   GGV FP+VF DGE +  IG+V++  + DFK FQS LS+ IGIS HQF+VY+A+  
Sbjct: 9   VVVAGGGVPFPVVFFDGECETGIGNVVIHPAMDFKAFQSILSRKIGISPHQFSVYIAD-- 68

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                    R R P+TGK+NF  +S EK+                               
Sbjct: 69  -----GNNPRNRFPLTGKINFSVLSYEKDCFVLVVLKRSRRSRTRKG------------- 128

Query: 121 TKTKAKTNQPN---KKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLER 180
               A+++ P    KK PP N MLLRR     ++++   +   +D  ++E R+R LQ+E+
Sbjct: 129 --KNAESSPPMAEIKKEPPANAMLLRRGGVGGSELVEARVCTGLD--EFERRVRDLQMEK 188

Query: 181 ENYSTSVGVRNLTAGGDGDGSWNGSVKSKTTACRDCLSAKETGAAVGFHCCANDAVTAGF 240
           E Y  ++G  NL    +          SK+  C +C  AK  G  + FH C  DAVT GF
Sbjct: 189 ERYLVNLGSANLRIARE----------SKSLVCEECEKAKVVGTDIDFHWCVYDAVTFGF 228

Query: 241 RSHAGPIARPIKES 252
           RSHAGPIARP K S
Sbjct: 249 RSHAGPIARPAKGS 228

[Close]

BLAST of Carg03633 vs. TrEMBL
Match: tr|A0A0A0LER6|A0A0A0LER6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780540 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.8e-71
Identity = 182/252 (72.22%), Postives = 195/252 (77.38%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           M ET  GVSFPIVFHDGE+D  IGSVIVSSST+FKNFQS LSKMIGISSHQFTVYLAEYK
Sbjct: 1   MAETVEGVSFPIVFHDGERDTNIGSVIVSSSTEFKNFQSSLSKMIGISSHQFTVYLAEYK 60

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ISLD STKIRRRIPITGKVNFGAIS EKN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ISLDSSTKIRRRIPITGKVNFGAISGEKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 TKTKAKTNQPNKKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLERENY 180
                                      IEN++L+GFISP MDRY+YE+RIRKLQLE+E Y
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXIENELLAGFISPVMDRYEYEDRIRKLQLEKEKY 180

Query: 181 STSVGVRNLTAGGDGDGSWNGSVKSKTTACRDCLSAKETGAAVGFHCCANDAVTAGFRSH 240
             S+ + NL  G  GDG  N S +S+   C DCLSAKE G A GFHCCANDAVTAGFRSH
Sbjct: 181 LMSIQMSNLRMGDGGDGGRNKSGRSERRICGDCLSAKERGVAAGFHCCANDAVTAGFRSH 240

Query: 241 AGPIARPIKESE 253
           AGPIARP+KESE
Sbjct: 241 AGPIARPVKESE 252

[Close]

BLAST of Carg03633 vs. TrEMBL
Match: tr|A0A2P5FI09|A0A2P5FI09_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068890 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 115/263 (43.73%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 1   MVE-TAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEY 60
           MVE  AGGVSFPIVF DGE +  IGSV V  + DFK FQS LS+ IGIS HQF+VYL+  
Sbjct: 1   MVEIAAGGVSFPIVFFDGESETDIGSVAVFPTLDFKRFQSVLSRKIGISPHQFSVYLS-- 60

Query: 61  KISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 S + R+RIPITGKVNFGAIS EK                               
Sbjct: 61  ------SPETRKRIPITGKVNFGAISSEKGCFFVVVLKRSKRDRRRRSLTHQNLPEDLYY 120

Query: 121 XTK--TKAKTNQPNKKNPPENVMLLRRNAGIENKMLS--GFISPAMDRYDYEERIRKLQL 180
            +     A  ++P KK PPENV LLRR+  I +   S  GF+SP  DR  Y  ++R  QL
Sbjct: 121 ASSPAPAANPHRPIKKAPPENVTLLRRDMVIAHHDQSSYGFLSPFSDRVGYAPQVRNYQL 180

Query: 181 ERENYS--TSVGVRNLTAGG-------DGDGSWNGSVKSKTTACRDCLSAKETGAAVGFH 240
           E++ Y    ++G+  L           D + S  G     +  C DCL A+E+G  VGFH
Sbjct: 181 EKQRYEYLMNMGLNGLGRDSTEPIKAVDDEESVRGG--GGSAVCEDCLRAEESGTEVGFH 240

Query: 241 CCANDAVTAGFRSHAGPIARPIK 250
            C  D VT GFRS  GPIARP K
Sbjct: 241 WCVYDPVTFGFRSAVGPIARPFK 253

[Close]

BLAST of Carg03633 vs. TrEMBL
Match: tr|W9R4W3|W9R4W3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004096 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.4e-37
Identity = 131/254 (51.57%), Postives = 161/254 (63.39%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           MVE  GGVSFP+VF DGE +  IGS+ V ++ +FK FQ+ LS+ IGIS HQF+V+L+   
Sbjct: 1   MVEIPGGVSFPVVFFDGEHETEIGSIAVYAAMEFKRFQALLSQKIGISPHQFSVHLS--- 60

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                S +  R+IPITGKVNFGAI C +    XXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 61  -----SPESCRKIPITGKVNFGAI-CREKGCFXXXXXXXXXXXXXXXXXXXXXXXXXXVI 120

Query: 121 TKTKAKTNQPNKKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLERENY 180
               A  +    KNPP NVMLLRR+A ++ +     +SP+ DR +YE R+  LQLERE Y
Sbjct: 121 LYPNADHSPMINKNPPPNVMLLRRDASVDCR-----VSPSSDRVEYENRVLNLQLEREMY 180

Query: 181 STSVGVRNLTAGGDGDGSWNGSVKSKTTA--CRDCLSAKETGAAVGFHCCANDAVTAGFR 240
             ++G+  L           G   ++T A  C DC+ AKE G   GFH C  DAVT  FR
Sbjct: 181 LVNMGLSGL-----------GREPNETAAPVCGDCVRAKELGQEAGFHWCVYDAVTFSFR 229

Query: 241 SHAGPIARPIKESE 253
             AGPIARP +  E
Sbjct: 241 PPAGPIARPFRRPE 229

[Close]

BLAST of Carg03633 vs. TrEMBL
Match: tr|A0A2P5B3I7|A0A2P5B3I7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_275290 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.3e-37
Identity = 118/261 (45.21%), Postives = 140/261 (53.64%), Query Frame = 0


Query: 1   MVETA-GGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEY 60
           MVE A GGVSFPIVF DGE +  IGS  VS + DFK FQS LS+ IGIS HQF+VYL+  
Sbjct: 1   MVEIAGGGVSFPIVFFDGESETDIGSFAVSPTLDFKRFQSVLSRKIGISPHQFSVYLS-- 60

Query: 61  KISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 S + R+RIPITGK NFGAIS EK           XXXXXX              
Sbjct: 61  ------SPETRKRIPITGKFNFGAISSEKGCFFVVVLKRSXXXXXXRSLTHQNLPEDLYY 120

Query: 121 XTK--TKAKTNQPNKKNPPENVMLLRRNAGI--ENKMLSGFISPAMDRYDYEERIRKLQL 180
            +   T A  ++  KK PPENV LLRR+  I   ++ L GF+SP  DR  Y  + R  QL
Sbjct: 121 SSSPATAANPHRSIKKAPPENVTLLRRDMVIAHNDQSLYGFLSPFSDRVGYAPQGRNYQL 180

Query: 181 ERENYSTSVGVRNLTAGGDGDGSWNGSVKSKT-------TACRDCLSAKETGAAVGFHCC 240
           E++ Y   + +     G D           K+         C DCL A+E+G  VGFH C
Sbjct: 181 EKQRYEYLMNMDLSGLGRDSTKPIKAVDDEKSVRGGGGLAVCEDCLRAEESGTEVGFHWC 240

Query: 241 ANDAVTAGFRSHAGPIARPIK 250
             D VT GFRS  GPIARP K
Sbjct: 241 VYDPVTFGFRSAVGPIARPFK 253

[Close]

BLAST of Carg03633 vs. TrEMBL
Match: tr|A0A0D2S3N7|A0A0D2S3N7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G149800 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 95/254 (37.40%), Postives = 130/254 (51.18%), Query Frame = 0


Query: 1   MVETAGGVSFPIVFHDGEQDVPIGSVIVSSSTDFKNFQSDLSKMIGISSHQFTVYLAEYK 60
           +V   GGV FP+VF DGE +  IG+V++  + DFK FQS LS+ IGIS HQF+VY+A+  
Sbjct: 9   VVVAGGGVPFPVVFFDGECETGIGNVVIHPAMDFKAFQSILSRKIGISPHQFSVYIAD-- 68

Query: 61  ISLDFSTKIRRRIPITGKVNFGAISCEKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                    R R P+TGK+NF  +S EK+                               
Sbjct: 69  -----GNNPRNRFPLTGKINFSVLSYEKDCFVLVVLKRSRRSRTRKG------------- 128

Query: 121 TKTKAKTNQPN---KKNPPENVMLLRRNAGIENKMLSGFISPAMDRYDYEERIRKLQLER 180
               A+++ P    KK PP N MLLRR     ++++   +   +D  ++E R+R LQ+E+
Sbjct: 129 --KNAESSPPMAEIKKEPPANAMLLRRGGVGGSELVEARVCTGLD--EFERRVRDLQMEK 188

Query: 181 ENYSTSVGVRNLTAGGDGDGSWNGSVKSKTTACRDCLSAKETGAAVGFHCCANDAVTAGF 240
           E Y  ++G  NL    +          SK+  C +C  AK  G  + FH C  DAVT GF
Sbjct: 189 ERYLVNLGSANLRIARE----------SKSLVCEECEKAKVVGTDIDFHWCVYDAVTFGF 228

Query: 241 RSHAGPIARPIKES 252
           RSHAGPIARP K S
Sbjct: 249 RSHAGPIARPAKGS 228

The following BLAST results are available for this feature:

BLAST of Carg03633 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59202.1	1.5e-70	72.22	hypothetical protein Csa_3G780540 [Cucumis sativus]	[more]
PON97422.1	7.4e-38	43.73	hypothetical protein TorRG33x02_068890 [Trema orientalis]	[more]
EXB38191.1	8.2e-37	51.57	hypothetical protein L484_004096 [Morus notabilis]	[more]
PON43331.1	1.4e-36	45.21	hypothetical protein PanWU01x14_275290 [Parasponia andersonii]	[more]
XP_012485744.1	2.5e-33	37.40	PREDICTED: uncharacterized protein LOC105799623 [Gossypium raimondii] >KJB36276....	[more]

BLAST of Carg03633 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03633 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03633 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LER6\|A0A0A0LER6_CUCSA	9.8e-71	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780540 PE=4 SV=1	[more]
tr\|A0A2P5FI09\|A0A2P5FI09_9ROSA	4.9e-38	43.73	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068890 PE=4 S...	[more]
tr\|W9R4W3\|W9R4W3_9ROSA	5.4e-37	51.57	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004096 PE=4 SV=1	[more]
tr\|A0A2P5B3I7\|A0A2P5B3I7_PARAD	9.3e-37	45.21	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_275290 PE...	[more]
tr\|A0A0D2S3N7\|A0A0D2S3N7_GOSRA	1.6e-33	37.40	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G149800 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03633-RA	Carg03633-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..135
None	No IPR available	PANTHER	PTHR36351	FAMILY NOT NAMED	coord: 1..250

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03633	Cla017634	Watermelon (97103) v1	carwmB0237
Carg03633	Csa3G780540	Cucumber (Chinese Long) v2	carcuB0276
Carg03633	MELO3C009534	Melon (DHL92) v3.5.1	carmeB0251
Carg03633	ClCG10G018390	Watermelon (Charleston Gray)	carwcgB0240
Carg03633	Cucsa.241770	Cucumber (Gy14) v1	carcgyB0294
Carg03633	CmaCh06G005200	Cucurbita maxima (Rimu)	carcmaB0350
Carg03633	CmaCh14G003530	Cucurbita maxima (Rimu)	carcmaB0343
Carg03633	CmoCh14G003510	Cucurbita moschata (Rifu)	carcmoB0347
Carg03633	CmoCh06G005200	Cucurbita moschata (Rifu)	carcmoB0351
Carg03633	Lsi03G018270	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03633	Cp4.1LG08g09690	Cucurbita pepo (Zucchini)	carcpeB0354
Carg03633	CsGy3G033040	Cucumber (Gy14) v2	carcgybB0263
Carg03633	MELO3C009534.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03633	Cla97C10G201370	Watermelon (97103) v2	carwmbB0254

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03633	Carg16210	Silver-seed gourd	carcarB291

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03633	Bottle gourd (USVL1VR-Ls)	carlsiB222
Carg03633	Bottle gourd (USVL1VR-Ls)	carlsiB223
Carg03633	Melon (DHL92) v3.5.1	carmeB0252
Carg03633	Melon (DHL92) v3.5.1	carmeB0253
Carg03633	Melon (DHL92) v3.6.1	carmedB0262
Carg03633	Melon (DHL92) v3.6.1	carmedB0263
Carg03633	Watermelon (Charleston Gray)	carwcgB0241
Carg03633	Watermelon (97103) v1	carwmB0239
Carg03633	Watermelon (97103) v2	carwmbB0255
Carg03633	Wax gourd	carwgoB0317
Carg03633	Wax gourd	carwgoB0328
Carg03633	Wax gourd	carwgoB0330
Carg03633	Silver-seed gourd	carcarB276
Carg03633	Silver-seed gourd	carcarB289
Carg03633	Silver-seed gourd	carcarB292
Carg03633	Silver-seed gourd	carcarB294
Carg03633	Cucumber (Gy14) v2	carcgybB0266
Carg03633	Cucumber (Gy14) v2	carcgybB0267
Carg03633	Cucumber (Gy14) v1	carcgyB0291
Carg03633	Cucumber (Gy14) v1	carcgyB0293
Carg03633	Cucurbita maxima (Rimu)	carcmaB0345
Carg03633	Cucurbita maxima (Rimu)	carcmaB0347
Carg03633	Cucurbita maxima (Rimu)	carcmaB0351
Carg03633	Cucurbita moschata (Rifu)	carcmoB0348
Carg03633	Cucurbita moschata (Rifu)	carcmoB0349
Carg03633	Cucurbita moschata (Rifu)	carcmoB0352
Carg03633	Cucurbita pepo (Zucchini)	carcpeB0348
Carg03633	Cucurbita pepo (Zucchini)	carcpeB0350
Carg03633	Cucurbita pepo (Zucchini)	carcpeB0351
Carg03633	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03633	Wild cucumber (PI 183967)	carcpiB0280
Carg03633	Wild cucumber (PI 183967)	carcpiB0284
Carg03633	Cucumber (Chinese Long) v2	carcuB0278
Carg03633	Cucumber (Chinese Long) v2	carcuB0280
Carg03633	Cucumber (Chinese Long) v3	carcucB0279
Carg03633	Cucumber (Chinese Long) v3	carcucB0280
Carg03633	Cucumber (Chinese Long) v3	carcucB0282