Carg03592 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03592
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine/arginine-rich SC35-like splicing factor
Location	Cucurbita_argyrosperma_scaffold_006 : 863198 .. 866788 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGTATGAGGGCGTTCGAGGCAGAGAAGGCTGAAGCCTAAGGAAGATCGGAGAATTTTGCTCTTCCAGATTGAATAGTAGGGGCTCCATTTGATTTCTCTCAGGTTTTCGCTTTCTTCTTCTCCAACCTTTTTTTTTTTTTTTTTTTTTTGCTTACTTTTTGTATCTGTCAATATTTTCTCTAACGCAGATTGGATGTAAACGAGTTTTGATTCCAGCAATGCGGATGTTATAGTTGAAGTATGCATGAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCTTTTAATGTCGAAGTTTGTGTGCTATCCATTTGATCACGTTCGAAGAACAGTTGACGTGAAAAAGGCTGCAACCATGTCCGATTTTTTCTATTTGTGGTCATCGCACTATGAGAATTGATCTTTCCTTGAGATCCGTTTGTTTCGCTGTATGGCAGCATGCAAACATTTTGATTTCTCCGAAGTAGATCTCTTTTGTTCTGCAGAAATATTGGAGCAGATGATCGAAGGAAAAGTTTAGTATTACTTTTGATAAATTTTCTTTGGCTGTTTATTGTTGATCGAAGGAAAAGTTGTGTTTGAGTCTTGCTTTTGATAAAATTTCTTAGGCTGTTTATGGTTGATCACAATTATATATTTAGTGGATATCATGTTTGGTAATGAATGATCGTCCCTCTGACTATTTATTTTGAGTGGTGGCATAAATCTCTGGTAGCTTGCTGATTGATGTGTTACAAATTTAGGTTATATCTGCATCTTAATGTTCTGCACTTCTATTTGTTGTTTATAAACACCATGATTTGTTTTAATTTCCCTGTTGTTGTTATAGGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGTTTGCTACTGCAATTTATATTTCATGGCTATTTCACCCGTTGCGTCTTTTATACATACAATTATGTCTTGGTTCTTCGTTTCTCATCACATTTATTACATGCATGCTAAGGACAATGCTAGTATATGCTGTATGTGGTACTTAAATTATATATTTGTTGAAGTACGAAGAAATGGTATCTTTTACAAGTAAAAATGTTCTCTGGTTGATTAATTTTTTCTGCTTGTGTCTAGTTTTATTTATTTATTTGTTTTTATTGTTATTATTTGAAGGAAGGAGATCTTGCAAGTTCGAAGATCATAATTTATTTTCTTTTGTAAAGTATTTTATATTGTATATTACTTGGGTGGTTGTCTTTTGTATTTTCAAATTGAGAAAAAACCACTTCCGTTAAGAAAAGGAACAAAGGGATAAAGGAGAATGTGTTTGCTTTTGTTCTGCATTGAGCTGGTATACTTCTTCATTTGCACTTGTTTTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGCATACTTTTGAAGATTGTTCTTTTGCTTTGTATGTATGGATTTTTTTTCCTGTATGTTTAACTCATTTTAGTCCCTTAATTTTGTACGCATATGATCTATATATTTGTGAATATATTTTCTGGACGGTTATTTCTATTGATTGCTTAACGATGTGGAATTGGTCCCTCTGTTTTCAATTATTTGGTTTTCCAATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAAGAGAACCAATGAAGTAATAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTTTTGTGTTGAAGACATTCAAATAAGTTCTGGTGACTTAATATGTGCATGAAGATTCGGTGGAAGTTGGGTTTGAATACATTGAGAAGTTCCAAGTCTTGAAGAATTTCCTCTCAATTTTTTCTTTGCCACTCGGAAGGTTAGCATAGTGATGTTAATATTCTCTTGTTAGAGCTCTATGTAGATGTTTCTGTCACTCGTAATTTATCTCTGAATGGATTAATGATGAATGATACCGCTGGTCAAAGTGACACTTTCTGAAATTTTCTGAATCAGTTGACATCCATTTTTCTAAATTATATTATGAACAGTAACATGCTTGTGAGTTCAGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGTTGCTATCTCTTTCTTTAAACTGATTTCTAGTAACCAACTGCTATTGCTAAGCTAGGATGCTTAGTGATGAAAATATAACTCTTGACTTCTACAAATTCTCGTGAAGCATCCTCAATGTTTTCCTATATCTGAATAATTTCTTTCTAGACTGCGGTACAACCAGAGCATTGCTCCAGATACAGCTTTCTTGTCTTTGAAATTTTGCCCAAAGAGATATTCATCATTAATATGGAAAATCTTGGATGTTACTAGTGGTATAACGCTACACCATTGCATACTGGAAGGATAAAAAAGAATTATTTCACCAGACTCCTTTAGCGAAAACGCATGGAGGAGAAACTACTGCTCTTCACTTGTGGAACAGAAATGAGGGATTGAGACTTTGTCTGGGTTTTCTTTTGAATGTGATTGAGTGTTGAACGCATGAAAAACGGACCAAATAAAAGGTTTTTCCACTTTAGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTTGAGTAAATTGACTTCAGCCATTTGACACCCATCATCGTGTATGCTTTTAGGGGAAAGAAAAGTTGTATACTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAACTACTCAGCTGATGCACCATTACAGTCTGTTTTCTTTTTCTTATCAATCTATAGTCCATCTTTTGAGAAATCCTTTATTAATTGTAAATATCAATACTCATTAGTATTGTTCATACATAAAATTGTTATCAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTAGGCGGTCATAATTTGTATTTTTTCCCATTATGATTATTGAATCACTAGGAGGAGGAGAGGGCAAGGGTGGTTTTTATTCTAATCTCATTTTATGTGAAATAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

mRNA sequence

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

Coding sequence (CDS)

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

Protein sequence

MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS

Homology

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BLAST of Carg03592 vs. NCBI nr
Match: XP_022948454.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 5.0e-65
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---A 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   A
Sbjct: 43  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAA 102

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
           DAKYE DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK
Sbjct: 103 DAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRK 162

Query: 180 NARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSR 217
            + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR
Sbjct: 163 YSPSPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSR 202

[Close]

BLAST of Carg03592 vs. NCBI nr
Match: XP_022948470.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 5.0e-65
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---A 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   A
Sbjct: 33  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAA 92

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
           DAKYE DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK
Sbjct: 93  DAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRK 152

Query: 180 NARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSR 217
            + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR
Sbjct: 153 YSPSPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSR 192

[Close]

BLAST of Carg03592 vs. NCBI nr
Match: XP_022948463.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 5.0e-65
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---A 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   A
Sbjct: 37  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAA 96

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
           DAKYE DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK
Sbjct: 97  DAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRK 156

Query: 180 NARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSR 217
            + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR
Sbjct: 157 YSPSPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSR 196

[Close]

BLAST of Carg03592 vs. NCBI nr
Match: XP_022151394.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia])

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 132/161 (81.99%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPA--- 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSGEPRGF FVQFVDPA   
Sbjct: 33  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAT 92

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
           DAKYE DGQVLLGRELTVVFAEENRKRPE MRARDSSRG SY+Y+RSPLRYS+SPHY RK
Sbjct: 93  DAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGRSYNYRRSPLRYSRSPHYDRK 152

Query: 180 NARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRG 218
                  YSPA+  RYSRS+SPR RRYRE+SY RSPYDSRG
Sbjct: 153 XXXXXXXYSPAQSGRYSRSISPRDRRYRERSYLRSPYDSRG 193

[Close]

BLAST of Carg03592 vs. NCBI nr
Match: XP_023539101.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 3.4e-61
Identity = 124/148 (83.78%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---A 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   A
Sbjct: 43  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAA 102

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
           DAKYE DGQVLLGRELTVVFAEENRKRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK
Sbjct: 103 DAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRK 162

Query: 180 NARSAEYYSPARCRRYSRSMSPRGRRYR 205
            +RS EYYSPAR RRYSRS+SPR RRYR
Sbjct: 163 YSRSPEYYSPARSRRYSRSISPRDRRYR 190

[Close]

BLAST of Carg03592 vs. TAIR10
Match: AT3G13570.1 (SC35-like splicing factor 30A)

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-38
Identity = 91/150 (60.67%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 62  LHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---A 121
           L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF F+QF+DPAD   A
Sbjct: 35  LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94

Query: 122 KYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHY 181
           K++ DG +LLGRELTVVFAEENRK+P  MR RD   G S  +   +RSP RYS+S  P  
Sbjct: 95  KHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRR 154

Query: 182 GRKN-ARSAEYYSPARCRRYSRSMSPRGRR 203
           GR +   S  Y SP   R  SRS+SP+ RR
Sbjct: 155 GRXSXXXSRGYNSPPAKRHQSRSVSPQDRR 183

[Close]

BLAST of Carg03592 vs. TAIR10
Match: AT1G55310.3 (SC35-like splicing factor 33)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32
Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 59  SRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSG------------EPRG 118
           SR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G            +PRG
Sbjct: 31  SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRG 90

Query: 119 FRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRG 156
           F FVQF+DP   ADAK+  DG +LLGRELTVVFAEENRK+P  MRAR+   G
Sbjct: 91  FGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGG 142

[Close]

BLAST of Carg03592 vs. TAIR10
Match: AT5G18810.1 (SC35-like splicing factor 28)

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 64  TSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF---VDPADAKY 123
           + LL+RNL  D RP D+   F RFGPLKDIYLPR+YY+GEPRGF FV++    D A+A  
Sbjct: 47  SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106

Query: 124 EWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLR 167
             + +V+ GRE+ +VFAEENRK P+ MR  + + G    YKR+  R
Sbjct: 107 RMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHR 152

[Close]

BLAST of Carg03592 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-19
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 65  SLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYE 124
           SLLVRN+  DCRPE++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D   A+  
Sbjct: 48  SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107

Query: 125 WDGQVLLGRELTVV 136
            + +   GRE+TVV
Sbjct: 108 MNRRSFAGREITVV 121

[Close]

BLAST of Carg03592 vs. TAIR10
Match: AT5G64200.1 (ortholog of human splicing factor SC35)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-10
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 65  SLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFV--QFVDPADAKYE- 124
           SLLV N+      +D++ LF ++G + D+++PRD  +G+ RGF FV  ++ D A    E 
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 125 WDGQVLLGRELTVVFAEENRKRPEVMRAR 151
            DG+V+ GRE+TV FA+      ++ + R
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGR 105

[Close]

BLAST of Carg03592 vs. Swiss-Prot
Match: sp|Q9LHP2|SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-37
Identity = 91/150 (60.67%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 62  LHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---A 121
           L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF F+QF+DPAD   A
Sbjct: 35  LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94

Query: 122 KYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHY 181
           K++ DG +LLGRELTVVFAEENRK+P  MR RD   G S  +   +RSP RYS+S  P  
Sbjct: 95  KHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRR 154

Query: 182 GRKN-ARSAEYYSPARCRRYSRSMSPRGRR 203
           GR +   S  Y SP   R  SRS+SP+ RR
Sbjct: 155 GRXSXXXSRGYNSPPAKRHQSRSVSPQDRR 183

[Close]

BLAST of Carg03592 vs. Swiss-Prot
Match: sp|Q9SEU4|SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-34
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 59  SRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP--- 118
           SR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF FVQF+DP   
Sbjct: 31  SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90

Query: 119 ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRG 156
           ADAK+  DG +LLGRELTVVFAEENRK+P  MRAR+   G
Sbjct: 91  ADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGG 130

[Close]

BLAST of Carg03592 vs. Swiss-Prot
Match: sp|Q1PDV2|SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-23
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 64  TSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF---VDPADAKY 123
           + LL+RNL  D RP D+   F RFGPLKDIYLPR+YY+GEPRGF FV++    D A+A  
Sbjct: 47  SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106

Query: 124 EWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLR 167
             + +V+ GRE+ +VFAEENRK P+ MR  + + G    YKR+  R
Sbjct: 107 RMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHR 152

[Close]

BLAST of Carg03592 vs. Swiss-Prot
Match: sp|O75494|SRS10_HUMAN (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-18
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 59  SRYL---HTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP 118
           SRYL   +TSL VRN+  D R ED+   FGR+GP+ D+Y+P D+Y+  PRGF +VQF D 
Sbjct: 2   SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61

Query: 119 ADAK---YEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYS 160
            DA+   +  D + + GR++ + FA+ +RK P  M+A++    +S S
Sbjct: 62  RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS 108

[Close]

BLAST of Carg03592 vs. Swiss-Prot
Match: sp|Q9R0U0|SRS10_MOUSE (Serine/arginine-rich splicing factor 10 OS=Mus musculus OX=10090 GN=Srsf10 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-18
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 59  SRYL---HTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP 118
           SRYL   +TSL VRN+  D R ED+   FGR+GP+ D+Y+P D+Y+  PRGF +VQF D 
Sbjct: 2   SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61

Query: 119 ADAK---YEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYS 160
            DA+   +  D + + GR++ + FA+ +RK P  M+A++    +S S
Sbjct: 62  RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS 108

[Close]

BLAST of Carg03592 vs. TrEMBL
Match: tr|A0A2P2L272|A0A2P2L272_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 105/156 (67.31%), Postives = 122/156 (78.21%), Query Frame = 0


Query: 59  SRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP--- 118
           +R L TSLLVRNLR DCRPED+ G FG+FGPLKD+YLPRD+Y+GEPRGF FVQ++DP   
Sbjct: 33  ARDLPTSLLVRNLRRDCRPEDLRGPFGQFGPLKDVYLPRDFYTGEPRGFGFVQYIDPADA 92

Query: 119 ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGR 178
           ADAK   DG++LLGRELTVVFAEENRK P  MRAR+  RG      +SP+RYS SP YGR
Sbjct: 93  ADAKRHMDGEILLGRELTVVFAEENRKNPSEMRARERVRGRG----QSPVRYSHSPRYGR 152

Query: 179 KNARSAEYYSPARCRR-YSRSMSPRGRRYREQSYSR 211
              RS  YYSP+  RR YSRS+SPR RRYR++SYSR
Sbjct: 153 SYYRSPVYYSPSPSRRHYSRSISPRDRRYRDRSYSR 184

[Close]

BLAST of Carg03592 vs. TrEMBL
Match: tr|A0A0A0LGW4|A0A0A0LGW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.0e-47
Identity = 100/118 (84.75%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFV---DPA 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSGEPRGF FVQFV   D A
Sbjct: 33  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAA 92

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRG--WSYSYKRSPLRYSQSPH 173
           DAKYE DGQVLLG ELTVVFAEENRKRPE MRARDSSRG  +SYS++ SPLRYSQSPH
Sbjct: 93  DAKYELDGQVLLGHELTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQSPH 150

[Close]

BLAST of Carg03592 vs. TrEMBL
Match: tr|A0A067JPG3|A0A067JPG3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03043 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 101/146 (69.18%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 59  SRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP--- 118
           SR L TSLLVRNLRHDCRPED+ G FG+FGPLKDIYLPRDYY+GEPRGF FVQ+VDP   
Sbjct: 33  SRDLPTSLLVRNLRHDCRPEDLRGPFGQFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADA 92

Query: 119 ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGR 178
           ADAK+  DG++LLGRELTVVFAEENRK+P  MRAR+  RG SY Y+RSPL YS+SP YGR
Sbjct: 93  ADAKHHMDGEILLGRELTVVFAEENRKKPAEMRARERVRGRSYDYRRSPLHYSRSPRYGR 152

Query: 179 KNARSAEYYSPARCRR-YSRSMSPRG 201
                         RR YSRS+SPRG
Sbjct: 153 SXXXXXXXXXXXXXRRHYSRSISPRG 178

[Close]

BLAST of Carg03592 vs. TrEMBL
Match: tr|A0A068VL02|A0A068VL02_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002040001 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 101/144 (70.14%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD-- 119
           R L TSLLVRNLR DCRPED+ G FG FG LKD+YLPRDYY+GEPRGF FVQ+VDPAD  
Sbjct: 34  RDLPTSLLVRNLRRDCRPEDLRGPFGEFGLLKDVYLPRDYYTGEPRGFGFVQYVDPADAA 93

Query: 120 -AKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRK 179
            AKY+ DGQVL GRELTVVFAEENRK+P  MRAR+  RG SY  +RSP RYS+SP   R 
Sbjct: 94  EAKYQMDGQVLCGRELTVVFAEENRKKPSEMRARERYRGRSYDRRRSPPRYSRSPFSSRT 153

Query: 180 NARSAEYYSPARCRRY-SRSMSPR 200
            +R+A+YYSP+  RRY SRS+SPR
Sbjct: 154 YSRTADYYSPSPRRRYHSRSISPR 177

[Close]

BLAST of Carg03592 vs. TrEMBL
Match: tr|A0A2K2A4X7|A0A2K2A4X7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G197000v3 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 106/159 (66.67%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 60  RYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFV---DPA 119
           R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYY+GE RGF FVQ++   D A
Sbjct: 34  RDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYTGETRGFGFVQYLESADAA 93

Query: 120 DAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWS-YSYKRSPLRYSQSPHYGR 179
           DAK+  DG++LLG+ELTVVFAEENRK+P  MR RD  RG   Y  +RSP     SP YGR
Sbjct: 94  DAKHHLDGEILLGQELTVVFAEENRKKPAEMRQRDRVRGGRYYDQRRSP-----SPLYGR 153

Query: 180 KNARSAEYYSPA-RCRRYSRSMSPRGRRYREQSYSRSPY 214
             + S  YYSP+ R R YSRS+SPR RRYR + YSRSP+
Sbjct: 154 SYSHSPVYYSPSPRRRHYSRSISPRDRRYRLRPYSRSPH 187

The following BLAST results are available for this feature:

BLAST of Carg03592 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948454.1	5.0e-65	82.50	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita mosch...	[more]
XP_022948470.1	5.0e-65	82.50	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucurbita mosch...	[more]
XP_022948463.1	5.0e-65	82.50	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita mosch...	[more]
XP_022151394.1	1.5e-64	81.99	serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]	[more]
XP_023539101.1	3.4e-61	83.78	serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Carg03592 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13570.1	2.2e-38	60.67	SC35-like splicing factor 30A	[more]
AT1G55310.3	2.3e-32	63.39	SC35-like splicing factor 33	[more]
AT5G18810.1	2.4e-24	51.89	SC35-like splicing factor 28	[more]
AT3G55460.1	6.6e-19	56.76	SC35-like splicing factor 30	[more]
AT5G64200.1	3.3e-10	37.08	ortholog of human splicing factor SC35	[more]

BLAST of Carg03592 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LHP2\|SL30A_ARATH	4.0e-37	60.67	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SEU4\|SRC33_ARATH	9.1e-34	71.00	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q1PDV2\|SRC28_ARATH	4.2e-23	51.89	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
sp\|O75494\|SRS10_HUMAN	9.2e-18	42.99	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]
sp\|Q9R0U0\|SRS10_MOUSE	9.2e-18	42.99	Serine/arginine-rich splicing factor 10 OS=Mus musculus OX=10090 GN=Srsf10 PE=1 ...	[more]

BLAST of Carg03592 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P2L272\|A0A2P2L272_RHIMU	1.8e-47	67.31	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A0A0LGW4\|A0A0A0LGW4_CUCSA	7.0e-47	84.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV=1	[more]
tr\|A0A067JPG3\|A0A067JPG3_JATCU	2.6e-46	69.18	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03043 PE=4 SV=1	[more]
tr\|A0A068VL02\|A0A068VL02_COFCA	1.3e-45	70.14	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002040001 PE=4 ...	[more]
tr\|A0A2K2A4X7\|A0A2K2A4X7_POPTR	1.7e-45	66.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G197000v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03592-RA	Carg03592-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..135 e-value: 5.9E-14 score: 62.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..130 e-value: 3.2E-11 score: 42.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..139 score: 15.204
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..150 e-value: 2.3E-19 score: 71.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..234
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 30..232
None	No IPR available	PANTHER	PTHR23147:SF6	SUBFAMILY NOT NAMED	coord: 30..232
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 64..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03592	Cla017571	Watermelon (97103) v1	carwmB0237
Carg03592	Csa3G792060	Cucumber (Chinese Long) v2	carcuB0276
Carg03592	MELO3C009595	Melon (DHL92) v3.5.1	carmeB0251
Carg03592	ClCG10G017790	Watermelon (Charleston Gray)	carwcgB0240
Carg03592	CSPI03G36150	Wild cucumber (PI 183967)	carcpiB0280
Carg03592	Cucsa.242410	Cucumber (Gy14) v1	carcgyB0294
Carg03592	CmaCh06G005680	Cucurbita maxima (Rimu)	carcmaB0350
Carg03592	CmaCh14G003940	Cucurbita maxima (Rimu)	carcmaB0343
Carg03592	CmoCh06G005740	Cucurbita moschata (Rifu)	carcmoB0351
Carg03592	CmoCh14G003950	Cucurbita moschata (Rifu)	carcmoB0347
Carg03592	Lsi03G017650	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03592	Cp4.1LG08g09280	Cucurbita pepo (Zucchini)	carcpeB0354
Carg03592	Cp4.1LG03g00080	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03592	CsGy3G033590	Cucumber (Gy14) v2	carcgybB0263
Carg03592	MELO3C009595.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03592	CsaV3_7G005550	Cucumber (Chinese Long) v3	carcucB0283
Carg03592	CsaV3_3G038510	Cucumber (Chinese Long) v3	carcucB0279
Carg03592	Cla97C10G200740	Watermelon (97103) v2	carwmbB0254
Carg03592	Bhi11G002085	Wax gourd	carwgoB0321

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03592	Carg16257	Silver-seed gourd	carcarB291

The following block(s) are covering this gene:

None