Carg03448 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03448
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Elongation factor 2
Location	Cucurbita_argyrosperma_scaffold_005 : 1932186 .. 1933018 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTTCTTTGATACCGCATATTCGGCGTCGCTAGCACTTCCCACCACCTCTTATTCCTTCTCTCACTCCCGCTGTTTCGGCGCCTGTACTATTCTGTTGTGGAGGCTCAAACAGACAGTCTCTCCCTTTGCTCTCCCTTCATCGTCTCTCAGACTCTTCTTTCTTGTGAGCACTCTCTCGCTCTCTCTCTCAGCTGAATTTATTTGCAATTGTATCTGTGTTCGTGTTCGTTCACTCGCGCTCTTTCTGTAGGTTTGGTGCTAATGAGATCTGTTTGCTCACTTGTTTATATTCGATGAATTCGTTCGAGATCTGTTTTGGTTGTCACTAGTATTCGATGGATTGAGTAATTGAAAGAATTGTTTCGATGCGTAATTAGAGTAGTTTCGTTCAGGTTATGGTTATTTTTTTTTATTTATGTTAAAATAATGAGATTTAAGCTGGAGAGTTTGCTACGCTATATCTTGAGATTTCTCTTTTGATATTATGTTGAAGATAATAGTTAAATTTGTTTTCACTGTTTCACCTGATTATTTCTGATCATTTAATATTTTAACAGTACTATACATTTTTTTTTCTCCCACAGTTAATAATCTCTTATCCGCGGACGTCGTGAATTTTGAAGACTTGTCAAGATGGTCAGTATGCTTACTCTTGACGATATGCAACGTACTTTTTCACTTTAATAATCTGTAATCTTCTATGTGTTCAGGTGAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAACACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGATATTCTAATTGAACTATTTTTTAGGCT

mRNA sequence

TGCTTCTTTGATACCGCATATTCGGCGTCGCTAGCACTTCCCACCACCTCTTATTCCTTCTCTCACTCCCGCTGTTTCGGCGCCTGTACTATTCTGTTGTGGAGGCTCAAACAGACAGTCTCTCCCTTTGCTCTCCCTTCATCGTCTCTCAGACTCTTCTTTCTTTTAATAATCTCTTATCCGCGGACGTCGTGAATTTTGAAGACTTGTCAAGATGGTGAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAACACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGATATTCTAATTGAACTATTTTTTAGGCT

Coding sequence (CDS)

ATGGTGAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAACACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGATATTCTAA

Protein sequence

MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF

Homology

[Close]

BLAST of Carg03448 vs. NCBI nr
Match: KGN46821.1 (hypothetical protein Csa_6G139210 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 35
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 34

[Close]

BLAST of Carg03448 vs. NCBI nr
Match: XP_011658408.1 (PREDICTED: elongation factor 2-like [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 35
          +VKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF
Sbjct: 7  LVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 40

[Close]

BLAST of Carg03448 vs. NCBI nr
Match: XP_011657107.1 (PREDICTED: elongation factor 2 [Cucumis sativus] >KGN47028.1 hypothetical protein Csa_6G176410 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. NCBI nr
Match: XP_004294071.1 (PREDICTED: elongation factor 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. NCBI nr
Match: XP_004294072.1 (PREDICTED: elongation factor 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. TAIR10
Match: AT1G56070.1 (Ribosomal protein S5/Elongation factor G/III/V family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. Swiss-Prot
Match: sp|Q9ASR1|EF2_ARATH (Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. Swiss-Prot
Match: sp|O23755|EF2_BETVU (Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELR IMD KHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRAIMDCKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. Swiss-Prot
Match: sp|P28996|EF2_PARKE (Elongation factor 2 OS=Parachlorella kessleri OX=3074 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-07
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFT +++R +M+Y++NIRNMSVIAHVDHGK
Sbjct: 1  MVKFTIDQIRGLMEYQNNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. Swiss-Prot
Match: sp|P29691|EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans OX=6239 GN=eef-2 PE=1 SV=4)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MV FT +E+R +MD K NIRNMSVIAHVDHGK
Sbjct: 1  MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. Swiss-Prot
Match: sp|P13060|EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster OX=7227 GN=EF2 PE=1 SV=4)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MV FT +E+R +MD K NIRNMSVIAHVDHGK
Sbjct: 1  MVNFTVDEIRGLMDKKRNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. TrEMBL
Match: tr|A0A0A0KGD1|A0A0A0KGD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139210 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 35
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 34

[Close]

BLAST of Carg03448 vs. TrEMBL
Match: tr|I1KU21|I1KU21_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804251 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. TrEMBL
Match: tr|I1MJ86|I1MJ86_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100788357 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. TrEMBL
Match: tr|A0A251PKB1|A0A251PKB1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138900 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]

BLAST of Carg03448 vs. TrEMBL
Match: tr|A0A251PKA7|A0A251PKA7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138700 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

The following BLAST results are available for this feature:

BLAST of Carg03448 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46821.1	2.6e-10	100.00	hypothetical protein Csa_6G139210 [Cucumis sativus]	[more]
XP_011658408.1	5.7e-10	97.06	PREDICTED: elongation factor 2-like [Cucumis sativus]	[more]
XP_011657107.1	3.7e-09	100.00	PREDICTED: elongation factor 2 [Cucumis sativus] >KGN47028.1 hypothetical protei...	[more]
XP_004294071.1	3.7e-09	100.00	PREDICTED: elongation factor 2-like [Fragaria vesca subsp. vesca]	[more]
XP_004294072.1	3.7e-09	100.00	PREDICTED: elongation factor 2 [Fragaria vesca subsp. vesca]	[more]

BLAST of Carg03448 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56070.1	1.5e-12	96.88	Ribosomal protein S5/Elongation factor G/III/V family protein	[more]

BLAST of Carg03448 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ASR1\|EF2_ARATH	2.7e-11	96.88	Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1	[more]
sp\|O23755\|EF2_BETVU	1.5e-09	90.63	Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1	[more]
sp\|P28996\|EF2_PARKE	2.4e-07	71.88	Elongation factor 2 OS=Parachlorella kessleri OX=3074 PE=2 SV=1	[more]
sp\|P29691\|EF2_CAEEL	4.0e-07	75.00	Elongation factor 2 OS=Caenorhabditis elegans OX=6239 GN=eef-2 PE=1 SV=4	[more]
sp\|P13060\|EF2_DROME	5.2e-07	75.00	Elongation factor 2 OS=Drosophila melanogaster OX=7227 GN=EF2 PE=1 SV=4	[more]

BLAST of Carg03448 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGD1\|A0A0A0KGD1_CUCSA	1.7e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139210 PE=4 SV=1	[more]
tr\|I1KU21\|I1KU21_SOYBN	2.4e-09	100.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100804251 PE=4 SV=1	[more]
tr\|I1MJ86\|I1MJ86_SOYBN	2.4e-09	100.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100788357 PE=4 SV=1	[more]
tr\|A0A251PKB1\|A0A251PKB1_PRUPE	2.4e-09	100.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138900 PE=4 SV=1	[more]
tr\|A0A251PKA7\|A0A251PKA7_PRUPE	2.4e-09	100.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03448-RA	Carg03448-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 3..33 e-value: 4.0E-7 score: 31.3
None	No IPR available	PANTHER	PTHR42908:SF10	ELONGATION FACTOR 2	coord: 1..32
None	No IPR available	PANTHER	PTHR42908	FAMILY NOT NAMED	coord: 1..32
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03448	Bhi10G000774	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03448	Cucurbita pepo (Zucchini)	carcpeB0464
Carg03448	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03448	Cucurbita pepo (Zucchini)	carcpeB0474
Carg03448	Cucurbita pepo (Zucchini)	carcpeB0479
Carg03448	Wild cucumber (PI 183967)	carcpiB0376
Carg03448	Cucumber (Chinese Long) v2	carcuB0373
Carg03448	Cucumber (Chinese Long) v3	carcucB0377
Carg03448	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03448	Bottle gourd (USVL1VR-Ls)	carlsiB306
Carg03448	Melon (DHL92) v3.5.1	carmeB0339
Carg03448	Melon (DHL92) v3.6.1	carmedB0347
Carg03448	Watermelon (Charleston Gray)	carwcgB0322
Carg03448	Watermelon (Charleston Gray)	carwcgB0327
Carg03448	Watermelon (97103) v1	carwmB0320
Carg03448	Watermelon (97103) v1	carwmB0330
Carg03448	Watermelon (97103) v2	carwmbB0346
Carg03448	Watermelon (97103) v2	carwmbB0355
Carg03448	Wax gourd	carwgoB0417
Carg03448	Silver-seed gourd	carcarB030
Carg03448	Silver-seed gourd	carcarB352
Carg03448	Silver-seed gourd	carcarB358
Carg03448	Cucumber (Gy14) v2	carcgybB0353
Carg03448	Cucumber (Gy14) v1	carcgyB0394
Carg03448	Cucurbita maxima (Rimu)	carcmaB0466
Carg03448	Cucurbita maxima (Rimu)	carcmaB0471
Carg03448	Cucurbita maxima (Rimu)	carcmaB0473
Carg03448	Cucurbita maxima (Rimu)	carcmaB0475
Carg03448	Cucurbita moschata (Rifu)	carcmoB0457
Carg03448	Cucurbita moschata (Rifu)	carcmoB0463
Carg03448	Cucurbita moschata (Rifu)	carcmoB0464
Carg03448	Cucurbita moschata (Rifu)	carcmoB0466