Carg03432 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03432
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_005 : 1831815 .. 1833021 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGGTAATAATATGTCTCGAAATTCAAAAGCTTAAGCTAATAAGTTATAGTATGATATTTGAAGTATTTTGTGACGTAGGGAACTCAAAGTAGCTACGAATTGCATGGCGTGGAAGAGACAAATATTAAGGTGGCAAGCCGCTACTCGGAAGAAGAAAGAAAAGAGAGAATTGTTAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATTAAGGTTCTAACAATTCTCCTTTTCTCTCTTAATTTATATAAATATATTGTTATTCGGGATTGTTGGGAGAGGAGTCTCATGTTAACTAATTAACGGGTTGGTCATGAGTTTATAAGTAAGAAACACTATCTTAATTAGTAATGAGTCATTTTAGAAAAGCCTAAAGTAAGCCACGAGAGCTTATACTCAAAGTGGACAATATCATATGGAGGTCCGTAATTACTAACATATAGTTCTTAAAATCCTCATGGTTTTTGTATGTTATTTCACAGTATGCATGTCGCAAAACCCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTTTGTGACACTGAAATCCCTCTCAAAACCAACCATTTAACTGCCCCATCTCACAATCAAAAGGTAAAAACCATACAAATTATCCATTTTTCTTGATTCTATGTTTTTTGTTTATAAAGACAAGACCTTTATCATTTTTTGTGTTTTGTTGTGTTTTTTTGGACAGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

mRNA sequence

ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

Coding sequence (CDS)

ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

Protein sequence

MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV

Homology

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BLAST of Carg03432 vs. NCBI nr
Match: XP_022943623.1 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 150/252 (59.52%), Postives = 150/252 (59.52%), Query Frame = 0


Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRXXXXXXXXXINLPRGEETFDPTLD 60
           MASFPHFYSD LYPNNFSDLQSLLMAAGDP IGGIR   XXXXX INLP GEETF  TLD
Sbjct: 1   MASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIR-NDXXXXXNINLPHGEETFVSTLD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           PDLKPFYRNIW                                                 
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

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BLAST of Carg03432 vs. NCBI nr
Match: XP_023511907.1 (zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 150/253 (59.29%), Postives = 155/253 (61.26%), Query Frame = 0


Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIR-XXXXXXXXXINLPRGEETFDPTL 60
           MASFPHFYSDLLYPNNFSDLQ+LLMAAGDP IGGIR XXXXXXXXXI+LPRGEETF P  
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQTLLMAAGDPGIGGIRXXXXXXXXXXIDLPRGEETFVPAF 60

Query: 61  DQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGF 120
           D+MASFESDTQSPLLTMPYPDLT+PSSPEFNKGMYGIHSVIGNQP+VPGSCNYDDELLGF
Sbjct: 61  DRMASFESDTQSPLLTMPYPDLTLPSSPEFNKGMYGIHSVIGNQPQVPGSCNYDDELLGF 120

Query: 121 VPDLKPFYRNIW------------------------------------------------ 160
           VPDLKPFYRNIW                                                
Sbjct: 121 VPDLKPFYRNIWGPQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIK 180

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BLAST of Carg03432 vs. NCBI nr
Match: XP_022986020.1 (uncharacterized protein LOC111483882 [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 5.6e-60
Identity = 137/252 (54.37%), Postives = 142/252 (56.35%), Query Frame = 0


Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRXXXXXXXXXINLPRGEETFDPTLD 60
           MASFPHFYSDLLYPNNFSDLQSLLMAAGDPR+GGIR         I+LPRGEETF P+ D
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIR--NDNNNNNIDLPRGEETFVPSFD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSV  +QP  P SCNYDDELL FV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDELLHFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           P+LKPFYRNIW                                                 
Sbjct: 121 PNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

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BLAST of Carg03432 vs. NCBI nr
Match: XP_022943624.1 (zinc finger protein CONSTANS-LIKE 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 126/228 (55.26%), Postives = 126/228 (55.26%), Query Frame = 0


Query: 25  MAAGDPRIGGIRXXXXXXXXXINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVP 84
           MAAGDP IGGIR    XXXX INLP GEETF  TLDQMASFESDTQSPLLTMPYPDLTVP
Sbjct: 1   MAAGDPGIGGIR-NDDXXXXNINLPHGEETFVSTLDQMASFESDTQSPLLTMPYPDLTVP 60

Query: 85  SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW------------- 144
           SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW             
Sbjct: 61  SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWGTQSSYELHGVEE 120

Query: 145 ------------------------------------------------------------ 160
                                                                       
Sbjct: 121 TNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNEL 180

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BLAST of Carg03432 vs. NCBI nr
Match: XP_004150045.2 (PREDICTED: uncharacterized protein LOC101221095 [Cucumis sativus] >KGN46811.1 hypothetical protein Csa_6G138620 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 4.5e-33
Identity = 104/271 (38.38%), Postives = 118/271 (43.54%), Query Frame = 0


Query: 1   MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRXXXXXXXXXINLPRGEETFDPTL 60
           MASFPH FY DL YPNNFSDLQ+LLMAAGD  + GIR         + + R EETF  + 
Sbjct: 1   MASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSR-EETFVSSF 60

Query: 61  DQMAS---FESDTQ-SPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVPG 120
           DQ  S     SDT  SP LTM +PDL       TVPS PEFN   Y IHS+I  QP+VPG
Sbjct: 61  DQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVPG 120

Query: 121 SCNYDDELLGFVPDLKPFYRNIWNKE---------------------------------- 160
           +CNY D+L+GFVP+LKP YR+ W  +                                  
Sbjct: 121 TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYLKK 180

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BLAST of Carg03432 vs. TrEMBL
Match: tr|A0A0A0KGC0|A0A0A0KGC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 104/271 (38.38%), Postives = 118/271 (43.54%), Query Frame = 0


Query: 1   MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRXXXXXXXXXINLPRGEETFDPTL 60
           MASFPH FY DL YPNNFSDLQ+LLMAAGD  + GIR         + + R EETF  + 
Sbjct: 1   MASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSR-EETFVSSF 60

Query: 61  DQMAS---FESDTQ-SPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVPG 120
           DQ  S     SDT  SP LTM +PDL       TVPS PEFN   Y IHS+I  QP+VPG
Sbjct: 61  DQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVPG 120

Query: 121 SCNYDDELLGFVPDLKPFYRNIWNKE---------------------------------- 160
           +CNY D+L+GFVP+LKP YR+ W  +                                  
Sbjct: 121 TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYLKK 180

[Close]

BLAST of Carg03432 vs. TrEMBL
Match: tr|A0A1S4E134|A0A1S4E134_CUCME (uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 96/152 (63.16%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 1   MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRXXXXXXXXXINL-PRGEETFDPT 60
           MASFPH FYSD LYPNNFSDLQ+LLMAAGD  + GIRXXXXXXXXX +L    EETF P 
Sbjct: 1   MASFPHNFYSD-LYPNNFSDLQTLLMAAGDSGMCGIRXXXXXXXXXXDLFVSREETFIPF 60

Query: 61  LDQMASFE---SDT-QSPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVP 120
            DQ  S E   SDT  SP LTM +PDL       TVPS PEFN   Y IHS+I  QP+VP
Sbjct: 61  FDQTVSPEQSSSDTGLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLISCQPQVP 120

Query: 121 GSCNYDDELLGFVPDLKPFYRNIWNKEEEEES 140
           G+CNY DELLGFVP+LKP YR+ W  +   E+
Sbjct: 121 GTCNYGDELLGFVPELKPLYRDTWGNQSRYET 151

The following BLAST results are available for this feature:

BLAST of Carg03432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943623.1	2.0e-65	59.52	zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata]	[more]
XP_023511907.1	2.2e-64	59.29	zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986020.1	5.6e-60	54.37	uncharacterized protein LOC111483882 [Cucurbita maxima]	[more]
XP_022943624.1	2.8e-51	55.26	zinc finger protein CONSTANS-LIKE 1-like isoform X2 [Cucurbita moschata]	[more]
XP_004150045.2	4.5e-33	38.38	PREDICTED: uncharacterized protein LOC101221095 [Cucumis sativus] >KGN46811.1 hy...	[more]

BLAST of Carg03432 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03432 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03432 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGC0\|A0A0A0KGC0_CUCSA	3.0e-33	38.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1	[more]
tr\|A0A1S4E134\|A0A1S4E134_CUCME	1.9e-32	63.16	uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03432-RA	Carg03432-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03432	Cla013468	Watermelon (97103) v1	carwmB0330
Carg03432	Csa6G138620	Cucumber (Chinese Long) v2	carcuB0367
Carg03432	MELO3C019654	Melon (DHL92) v3.5.1	carmeB0339
Carg03432	ClCG02G018550	Watermelon (Charleston Gray)	carwcgB0327
Carg03432	CSPI06G11230	Wild cucumber (PI 183967)	carcpiB0370
Carg03432	Cucsa.118380	Cucumber (Gy14) v1	carcgyB0391
Carg03432	CmaCh20G002720	Cucurbita maxima (Rimu)	carcmaB0473
Carg03432	CmoCh20G002950	Cucurbita moschata (Rifu)	carcmoB0464
Carg03432	Lsi10G015240	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03432	Cp4.1LG16g07190	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03432	CsGy6G011330	Cucumber (Gy14) v2	carcgybB0347
Carg03432	MELO3C019654.2	Melon (DHL92) v3.6.1	carmedB0347
Carg03432	CsaV3_6G013650	Cucumber (Chinese Long) v3	carcucB0370
Carg03432	Cla97C02G044440	Watermelon (97103) v2	carwmbB0346
Carg03432	Bhi10G000747	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03432	Watermelon (97103) v2	carwmbB0355
Carg03432	Wax gourd	carwgoB0417
Carg03432	Silver-seed gourd	carcarB030
Carg03432	Silver-seed gourd	carcarB352
Carg03432	Silver-seed gourd	carcarB358
Carg03432	Cucumber (Gy14) v2	carcgybB0355
Carg03432	Cucumber (Gy14) v1	carcgyB0399
Carg03432	Cucurbita maxima (Rimu)	carcmaB0466
Carg03432	Cucurbita maxima (Rimu)	carcmaB0471
Carg03432	Cucurbita maxima (Rimu)	carcmaB0475
Carg03432	Cucurbita moschata (Rifu)	carcmoB0457
Carg03432	Cucurbita moschata (Rifu)	carcmoB0463
Carg03432	Cucurbita moschata (Rifu)	carcmoB0466
Carg03432	Cucurbita pepo (Zucchini)	carcpeB0464
Carg03432	Cucurbita pepo (Zucchini)	carcpeB0474
Carg03432	Cucurbita pepo (Zucchini)	carcpeB0479
Carg03432	Wild cucumber (PI 183967)	carcpiB0379
Carg03432	Cucumber (Chinese Long) v2	carcuB0376
Carg03432	Cucumber (Chinese Long) v3	carcucB0380
Carg03432	Bottle gourd (USVL1VR-Ls)	carlsiB306
Carg03432	Melon (DHL92) v3.5.1	carmeB0344
Carg03432	Melon (DHL92) v3.6.1	carmedB0350
Carg03432	Watermelon (Charleston Gray)	carwcgB0322
Carg03432	Watermelon (97103) v1	carwmB0320