Carg03415 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03415
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	myb family transcription factor APL-like
Location	Cucurbita_argyrosperma_scaffold_005 : 1737404 .. 1740520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTCTTGAATCTCCCAAGTATTCCCATTCCCACACAGAGATCTGTGAGGCTGAGCTGCTGAGAGAGCGTAGAGAAGAGAGAAATTGAGAATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAGTACGTATCTTCTCTCACTAACTTCTACCCTCGTCTTTTAAACCTCATATTTTAACCCATAATTCTTTCGCAGAGGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACCCTCTACCATCTCAAGAGCCACCTCCAGGTTACCGTAACCCATCAGCTTAAACTTTTGAATTAAGTAATAAGAAAATTCCTCGTTGGGTTACGTCCTAATTTGAATATAAATTCAATCGAGTTAAGCTTTTGAGTTTAGTGGTCGTTTAACATCCTCTTCTCTCTAAACGGGAGTTCAGAAGTTCAGGCTCGGGAAACAACCCCACAAAGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGGTGAATTTCAAAATTCTCTTCTAATTTCAAACTTTCAAACATAATATTAAGCAAATTATATTCTTTGTGCTTACAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCGACCTTAATGGAGCGTAGTATGAACGAGTAAGGCCACACTTCATTTATTCTTAATACCCCAAGTTTTGCTGATACAGTATCTACCACTCAAAAATATGAATAGATCTGAAAATATCTGAAAATATTGTTACTTAACGAAACAATAGAGAGTTAAGAATGAGAAATAAAATTGGAATGGAAGGTTCAATCTTCATTGATATTCACAACATTTAAATAGGATACAAACTACTTACTAGTACCGAAAATATAAACTAACTAAATCTTGAGAATAAAATGTACTACTAATCAAATCATAAAAGAAAAATGTTAACGGATTAAGAATATATTCTCTAAATATTAACGTACGAATATCTTGACTAATTCAAACTAGCAACAAGTTGCACTAAATTTTGACATGTTCTTGGTTCTTTATTTTTTGTTTGAGAGAGTGTCGGTGTGTTTTGTTGTACGACAAATGGTGTCTCATCATTCTAATTTTGCTGAACATCTAACCTTAAATCTTACAAAAAAAAAAAAAACATATTTGTCTGCTAGAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTTAGCCCATCATTACTTCTCTTCATGAATTTAACTCCATGCTTCTTATTATGATTATGTAATTTTGATTTGAATTATATCGTTGGACCCAAGAGTTTGGTATTGATTTTCCTTTACAAGTTAGTGCGAATTTGAAATTTTGATATCGAGTTTTTTTTTTTTTTTTTGCTTTTGTTGGGTTCGTATGAGGTCTCACTTCAGTTGGAGGGGGAACAAAACATTTCTTATAAACGTGTGGGAAACTCTCCCTAGTAAACACTTTTTTAAAATCATGAGGCTGACGTCGATACGTAACGGACGGTGCAAGGCTGTGGGCTGTTAGAAATGGTATTGAGTCAGTTACCAAATGATGCAAGGTACTGGTCGGAGTACGGCTAGAACTTGTCCATAGTAGACGCGTTTTAAAACTTTGAGGGAAAATCTAGAAAGAAAAGTCCAAAGAAGACAATATTTGCTAGCGGTGAGTTTGAGCAGTTACAAATGGTATCAGAATCAGTCATCGAACAGTGTGAGACACTGGTTGGAGTAGTGCGAGACACTCTCCATAGTAGACGCATTTTAAAACCTTGAAAGGAAGCTCAAAAAGGGAAACCTAGAGAGGACGATATCTATTTAGCAGTGAGTTTGGATGGTTATAAATGGTATCAGAGTTGGTCACTGGACAGTGCGATGCACTGGTCGGAGTAGGGCTAGACGCTCTCCATAATAGACGTGTTTTAAAAACCTTGTGGGAAAGCCCTTAAAGGGGAACCCCACTAAGGACGCTAATAGTGGGCTTAGGCTGTTACAGTACAATTGTAGTGAGGTGGGAAAGGTATTAGATCATCGATCTTTTGAAGGGTAATTAGTGTCTCATCCATTGAACTACGCTCGATTTGAGCTTACAATTTTATTTCGATTCATGAGGCAAATATGTGAGCTATTGACGTGGAAAAAGGAATTTAATTAATTTTTGAAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCAGTACCAACCTTGTTCCAGACACCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCCCCGCCTCTCATCGACTGCCTCAAGAAGCCTAGCCCCTTCATCTCTGGAGCTGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGTGATCAATGAAAAGAAGTTTGAAGCATCGGTAAAGCTTGAGAGGCCGTCGCCACGGCAGTCGTCGGGACACTCCGACGAAAGGGTGAATAATAATAATAACGGTATGCCCAACAAATGTAACTAATTAAATATAAGATTAGGGTTTAGATCTTAACAAATGCTCATACTCATTATTATGTTTGAATGTAACTCTTCTTCTCGACTTTATGTCGATTTTGCTCTGAGAAATGTGAAGTACGAAAATTTGAATTTTCGACTTCAAGAAAATGAATACATGTTTATGTGATCACATTTTTTCGTGTTTTTAGAATCATCGAGATAGTTATTCT

mRNA sequence

TTGTTCTTGAATCTCCCAAGTATTCCCATTCCCACACAGAGATCTGTGAGGCTGAGCTGCTGAGAGAGCGTAGAGAAGAGAGAAATTGAGAATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACCCTCTACCATCTCAAGAGCCACCTCCAGTGGTCGTTTAACATCCTCTTCTCTCTAAACGGGAGTTCAGAAGTTCAGGCTCGGGAAACAACCCCACAAAGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCGACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCAGTACCAACCTTGTTCCAGACACCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCCCCGCCTCTCATCGACTGCCTCAAGAAGCCTAGCCCCTTCATCTCTGGAGCTGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGTGATCAATGAAAAGAAGTTTGAAGCATCGGTAAAGCTTGAGAGGCCGTCGCCACGGCAGTCGTCGGGACACTCCGACGAAAGGGTGAATAATAATAATAACGGTATGCCCAACAAATGTAACTAATTAAATATAAGATTAGGGTTTAGATCTTAACAAATGCTCATACTCATTATTATGTTTGAATATTTTGCTCTGAGAAATGTGAAGTACGAAAATTTGAATTTTCGACTTCAAGAAAATGAATACATGTTTATGTGATCACATTTTTTCGTGTTTTTAGAATCATCGAGATAGTTATTCT

Coding sequence (CDS)

ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACCCTCTACCATCTCAAGAGCCACCTCCAGTGGTCGTTTAACATCCTCTTCTCTCTAAACGGGAGTTCAGAAGTTCAGGCTCGGGAAACAACCCCACAAAGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCGACCTTAATGGAGCGTAG

Protein sequence

MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQWSFNILFSLNGSSEVQARETTPQRIQRSIDKGWHESFRHGTSEKQWIFFDLNGA

Homology

[Close]

BLAST of Carg03415 vs. NCBI nr
Match: XP_022943792.1 (myb family transcription factor APL-like [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. NCBI nr
Match: XP_022985858.1 (myb family transcription factor APL-like [Cucurbita maxima])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. NCBI nr
Match: XP_023511848.1 (myb family transcription factor APL-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. NCBI nr
Match: XP_004140019.1 (PREDICTED: myb family transcription factor APL [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 9.5e-40
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          M+H TKKPSSMT HDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MYHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. NCBI nr
Match: XP_008456284.1 (PREDICTED: myb family transcription factor APL-like [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH TKKPSSMT HDR MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFHATKKPSSMTSHDRQMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. TAIR10
Match: AT1G79430.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 150.2 bits (378), Expect = 9.2e-37
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MFHTTKKPSSM--TPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 60
          MFH  KKPSSM  +  +R MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1  MFH-AKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 60

Query: 61 ATPKTIMRVMGVKGLTLYHLKSHLQ 84
          ATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 ATPKTIMRVMGVKGLTLYHLKSHLQ 84

[Close]

BLAST of Carg03415 vs. TAIR10
Match: AT3G24120.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 22 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 81
          GD+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct: 30 GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 89

Query: 82 LQ 84
          LQ
Sbjct: 90 LQ 91

[Close]

BLAST of Carg03415 vs. TAIR10
Match: AT3G12730.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 24 SGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 83
          SGLVLTTDPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of Carg03415 vs. TAIR10
Match: AT4G13640.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 23 DSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 82
          D+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSHL
Sbjct: 27 DACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 86

Query: 83 Q 84
          Q
Sbjct: 87 Q 87

[Close]

BLAST of Carg03415 vs. TAIR10
Match: AT5G18240.1 (myb-related protein 1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 22  GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 81
           GDSGL+L+TD KPRL+WT +LHERFV+AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct: 34  GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSH 93

Query: 82  LQWSFNILFSLNGSSEVQARETT 105
           LQ  + +  +LNG +     +T+
Sbjct: 94  LQ-KYRLSKNLNGQANSSLNKTS 115

[Close]

BLAST of Carg03415 vs. Swiss-Prot
Match: sp|Q9SAK5|APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-35
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MFHTTKKPSSM--TPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 60
          MFH  KKPSSM  +  +R MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1  MFH-AKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 60

Query: 61 ATPKTIMRVMGVKGLTLYHLKSHLQ 84
          ATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 ATPKTIMRVMGVKGLTLYHLKSHLQ 84

[Close]

BLAST of Carg03415 vs. Swiss-Prot
Match: sp|Q94A57|PHL2_ARATH (Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-28
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 22 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 81
          GD+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct: 30 GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 89

Query: 82 LQ 84
          LQ
Sbjct: 90 LQ 91

[Close]

BLAST of Carg03415 vs. Swiss-Prot
Match: sp|Q8VYI2|PHLC_ARATH (Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-27
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 24 SGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 83
          SGLVLTTDPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of Carg03415 vs. Swiss-Prot
Match: sp|Q8LAJ7|PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-27
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 23 DSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 82
          D+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSHL
Sbjct: 27 DACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 86

Query: 83 Q 84
          Q
Sbjct: 87 Q 87

[Close]

BLAST of Carg03415 vs. Swiss-Prot
Match: sp|Q9FK47|PHLA_ARATH (Myb-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=MYR1 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 22  GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 81
           GDSGL+L+TD KPRL+WT +LHERFV+AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct: 34  GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSH 93

Query: 82  LQWSFNILFSLNGSSEVQARETT 105
           LQ  + +  +LNG +     +T+
Sbjct: 94  LQ-KYRLSKNLNGQANSSLNKTS 115

[Close]

BLAST of Carg03415 vs. TrEMBL
Match: tr|A0A1S3C2G3|A0A1S3C2G3_CUCME (myb family transcription factor APL-like OS=Cucumis melo OX=3656 GN=LOC103496278 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH TKKPSSMT HDR MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFHATKKPSSMTSHDRQMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 83

[Close]

BLAST of Carg03415 vs. TrEMBL
Match: tr|B9HYB7|B9HYB7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G174100v3 PE=4 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 4.5e-38
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH TKKPS+M  HDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFH-TKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 82

[Close]

BLAST of Carg03415 vs. TrEMBL
Match: tr|Q49QW7|Q49QW7_POPTO (Myb family transcription factor-related protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.5e-38
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH TKKPS+M  HDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFH-TKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 82

[Close]

BLAST of Carg03415 vs. TrEMBL
Match: tr|V9LXI2|V9LXI2_TOBAC (Myb family transcription factor APL OS=Nicotiana tabacum OX=4097 GN=APL PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH  KKPS+M  HDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFH-AKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 82

[Close]

BLAST of Carg03415 vs. TrEMBL
Match: tr|A0A2G3CV04|A0A2G3CV04_CAPCH (Myb family transcription factor APL OS=Capsicum chinense OX=80379 GN=BC332_07646 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60
          MFH  KKPS+M  HDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT
Sbjct: 1  MFH-AKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKAT 60

Query: 61 PKTIMRVMGVKGLTLYHLKSHLQ 84
          PKTIMRVMGVKGLTLYHLKSHLQ
Sbjct: 61 PKTIMRVMGVKGLTLYHLKSHLQ 82

The following BLAST results are available for this feature:

BLAST of Carg03415 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943792.1	1.3e-41	100.00	myb family transcription factor APL-like [Cucurbita moschata]	[more]
XP_022985858.1	1.3e-41	100.00	myb family transcription factor APL-like [Cucurbita maxima]	[more]
XP_023511848.1	1.3e-41	100.00	myb family transcription factor APL-like [Cucurbita pepo subsp. pepo]	[more]
XP_004140019.1	9.5e-40	96.39	PREDICTED: myb family transcription factor APL [Cucumis sativus]	[more]
XP_008456284.1	3.6e-39	96.39	PREDICTED: myb family transcription factor APL-like [Cucumis melo]	[more]

BLAST of Carg03415 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79430.2	9.2e-37	88.24	Homeodomain-like superfamily protein	[more]
AT3G24120.2	3.2e-29	93.55	Homeodomain-like superfamily protein	[more]
AT3G12730.1	1.2e-28	95.00	Homeodomain-like superfamily protein	[more]
AT4G13640.2	2.7e-28	93.44	Homeodomain-like superfamily protein	[more]
AT5G18240.1	1.1e-26	65.06	myb-related protein 1	[more]

BLAST of Carg03415 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SAK5\|APL_ARATH	1.7e-35	88.24	Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 ...	[more]
sp\|Q94A57\|PHL2_ARATH	5.7e-28	93.55	Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1	[more]
sp\|Q8VYI2\|PHLC_ARATH	2.2e-27	95.00	Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 P...	[more]
sp\|Q8LAJ7\|PHL3_ARATH	4.8e-27	93.44	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1	[more]
sp\|Q9FK47\|PHLA_ARATH	2.0e-25	65.06	Myb-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=MYR1 PE=1 SV=1	[more]

BLAST of Carg03415 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2G3\|A0A1S3C2G3_CUCME	2.4e-39	96.39	myb family transcription factor APL-like OS=Cucumis melo OX=3656 GN=LOC103496278...	[more]
tr\|B9HYB7\|B9HYB7_POPTR	4.5e-38	95.18	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G174100v3 PE=...	[more]
tr\|Q49QW7\|Q49QW7_POPTO	4.5e-38	95.18	Myb family transcription factor-related protein OS=Populus tomentosa OX=118781 P...	[more]
tr\|V9LXI2\|V9LXI2_TOBAC	1.7e-37	93.98	Myb family transcription factor APL OS=Nicotiana tabacum OX=4097 GN=APL PE=2 SV=...	[more]
tr\|A0A2G3CV04\|A0A2G3CV04_CAPCH	1.7e-37	93.98	Myb family transcription factor APL OS=Capsicum chinense OX=80379 GN=BC332_07646...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03415-RA	Carg03415-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 35..83 e-value: 1.3E-7 score: 31.6
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 33..87 e-value: 4.9E-22 score: 76.0
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 29..87 e-value: 4.5E-24 score: 86.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR31499	FAMILY NOT NAMED	coord: 4..83
None	No IPR available	PANTHER	PTHR31499:SF29	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 4..83
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 32..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03415	Cla013447	Watermelon (97103) v1	carwmB0330
Carg03415	CmaCh20G002900	Cucurbita maxima (Rimu)	carcmaB0473
Carg03415	CmoCh20G003120	Cucurbita moschata (Rifu)	carcmoB0464
Carg03415	Lsi10G015090	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03415	Cp4.1LG16g07100	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03415	Cla97C02G044680	Watermelon (97103) v2	carwmbB0346
Carg03415	Cla97C09G184440	Watermelon (97103) v2	carwmbB0355
Carg03415	Bhi05G001707	Wax gourd	carwgoB0417
Carg03415	Bhi10G000727	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03415	Carg15644	Silver-seed gourd	carcarB358
Carg03415	Carg11734	Silver-seed gourd	carcarB369

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03415	Cucumber (Gy14) v2	carcgybB0347
Carg03415	Cucumber (Gy14) v1	carcgyB0391
Carg03415	Cucurbita maxima (Rimu)	carcmaB0477
Carg03415	Cucurbita moschata (Rifu)	carcmoB0467
Carg03415	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03415	Wild cucumber (PI 183967)	carcpiB0370
Carg03415	Cucumber (Chinese Long) v2	carcuB0367
Carg03415	Cucumber (Chinese Long) v3	carcucB0370
Carg03415	Melon (DHL92) v3.5.1	carmeB0339
Carg03415	Melon (DHL92) v3.6.1	carmedB0347
Carg03415	Watermelon (Charleston Gray)	carwcgB0327