Carg03302 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03302
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	histone H4
Location	Cucurbita_argyrosperma_scaffold_005 : 1157744 .. 1159779 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGACGTGGAAAGGGCGGCAAGGGCTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATCACCAAGCCTGCTATTCGCCGTTTAGCTCGTAGAGGCGGTGTGAAGCGTATCAGTGGATTAATCTATGAAGAAACCAGAGGAGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCATTGAAGAGGCAGGGAAGGACTTTGTATGGGTTTGGAGGTTAGGTCATAGGTTAATTTTACGAATGATTGTATATCTGAGATTTGGAAATCTAGTCATTGATGTTCTTTTAGTTTTACTCGGAAGTCGTTTCATCGTTGTTCTTGCAATGAAATTTTAATTGATCGTGTACTTTACTCTTCCGTTTCTATTTACTCCCTATCTCGTCTACTCAAACGATGAGAATTTTCTCCTTATTGATTGATAGAAGTTTAAACCGAATCTAGATTGATCGTCTCTTGAGTTTCTGTTTGTTGAATTCATGTTTGAAATGAGTTTCAATTTATGATTCAACAGCTGCTATTCGACAATCATTATGATTTGAATCGATTAAATTAGCATTTGAAAGCAGTTGGATTGTTTCTTAGGCACGATCTTAGAAATACGATGGTTGGATGATTCTGCCTATCTTTTAGAAGACTAGCTAGATGATTACATCACTAGATTTTTTAGTTTTTTTGGTTTTTGAAATATCGTTAAGGATCTTCCATTGCCTTGAACAAGATAGAACAAGGAACGATTTGGGTTATAATTTCACGTGGAAATGGCAGATTTGTTGGTCATTTTGGAGTCTAGTTTTTCTTGTTCGACATTGTTGGACTAGAGCACTGTTGAAGTGTTCATAGTCTAGAAGCCCCTTTTTGTTTGCAATGGCTACAGGCTTTGCAGGTTGTTTGCTATGGAGCATGGATTCAGATGTGGACTCCTTCGCCGGCGACAGAAGGTGGGCGAGGTTTGTGCTGTAAGCTTCTTCTCTGTCATCTTTTGGGACCAATCTTATCATTATTTTGTCAAACAAAACCACCTGGCTTGATTACCACCATGCGTATCTGGCCTATCTGATATCAAGAGCATGCTCTTGGGCATATTTGAAATGACTTTCTAAGTGTATTTAACATTGTTTTGTTGATCACTTGAATAGAGAATGCCATTGCACACTAGCCTCTTGTTTGAAAAGGGTTCCAAACGTTTCCCGTTTGGAACGAATCTAACATATACTTGTCGAGCTGAAGAAGCCTCGAGCATTAGAAGTAGTAGGATCAAGGTAGCATGGCATGTTTGAAATGACTTTCTAAGTATTTAAGATCGTTTTGAGCACTTGAATAGGAAATGTCATTTGCTCACTAGCTTCTTGTTTGAATAGGATTCCAAACCATTCTTGTTTTGGAACGAATCTAGCACATATTTGCAAGGCTAAAGAAGCCTCGGGCGTTAGAAGTAGTAGGGTCAAGGTAGCATTCCATTGGTGTTGAGCTTTCTCACCCAACTACATTCTGATCTCTTAGAGCTGCTAAATGTTCGAACCTGATAGTATAGATAGCTTATATAGCTTATGTCGAGATGGTTGATTTGCCTGGTGGGGGTGGCTCCTTTATCGTGGATAAACAGCTCGAGCCCTACACGGTTTTTAAGCACATGATTAGGTTAGAATATTCCAAACCGATCGAAATACTAAACTCATGTAATTACTACTCATCTTTACTTGTATCAATGTCTATTGCTTGTTATATTCTCCCAACCATCTCGAAATACTAAATGCACGATGGTCATCTAGACACTGGTAGCTTTCAGCTTTGAGGCATTTGTGTCTTCCGGGATTGTTATAAGTCAGCTATGCGACGGTGAATTCGTTCTCGAGCCTTGTACACCGCCTGTCACAGTATGGGAATTGGCCACCCCCAAAGTTGTTACCTTAACGGTAAGAAGAGGATGCATAAGGCAAGACTAG

mRNA sequence

ATGTCCGGACGTGGAAAGGGCGGCAAGGGCTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATCACCAAGCCTGCTATTCGCCGTTTAGCTCGTAGAGGCGGTGTGAAGCGTATCAGTGGATTAATCTATGAAGAAACCAGAGGAGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCATTGAAGAGGCAGGGAAGGACTTTGTATGGGTTTGGAGGCTTTGCAGGTTGTTTGCTATGGAGCATGGATTCAGATGTGGACTCCTTCGCCGGCGACAGAAGGTGGGCGAGGATTCCAAACCATTCTTGTTTTGGAACGAATCTAGCACATATTTGCAAGGCTAAAGAAGCCTCGGGCGTTAGAAGTAGTAGGGTCAAGACACTGGTAGCTTTCAGCTTTGAGGCATTTGTGTCTTCCGGGATTGTTATAAGTCAGCTATGCGACGGTGAATTCGTTCTCGAGCCTTGTACACCGCCTGTCACAGTATGGGAATTGGCCACCCCCAAAGTTGTTACCTTAACGGTAAGAAGAGGATGCATAAGGCAAGACTAG

Coding sequence (CDS)

ATGTCCGGACGTGGAAAGGGCGGCAAGGGCTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGATAACATTCAGGGCATCACCAAGCCTGCTATTCGCCGTTTAGCTCGTAGAGGCGGTGTGAAGCGTATCAGTGGATTAATCTATGAAGAAACCAGAGGAGTTTTGAAGATTTTCCTCGAGAATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCATTGAAGAGGCAGGGAAGGACTTTGTATGGGTTTGGAGGCTTTGCAGGTTGTTTGCTATGGAGCATGGATTCAGATGTGGACTCCTTCGCCGGCGACAGAAGGTGGGCGAGGATTCCAAACCATTCTTGTTTTGGAACGAATCTAGCACATATTTGCAAGGCTAAAGAAGCCTCGGGCGTTAGAAGTAGTAGGGTCAAGACACTGGTAGCTTTCAGCTTTGAGGCATTTGTGTCTTCCGGGATTGTTATAAGTCAGCTATGCGACGGTGAATTCGTTCTCGAGCCTTGTACACCGCCTGTCACAGTATGGGAATTGGCCACCCCCAAAGTTGTTACCTTAACGGTAAGAAGAGGATGCATAAGGCAAGACTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLLWSMDSDVDSFAGDRRWARIPNHSCFGTNLAHICKAKEASGVRSSRVKTLVAFSFEAFVSSGIVISQLCDGEFVLEPCTPPVTVWELATPKVVTLTVRRGCIRQD

Homology

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BLAST of Carg03302 vs. NCBI nr
Match: XP_022148325.1 (uncharacterized protein LOC111017005 [Momordica charantia])

HSP 1 Score: 214.5 bits (545), Expect = 3.4e-52
Identity = 116/143 (81.12%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIXRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLLWS--MDSDVDS 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG AG LL    MDS+V+S
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGCAGSLLLGILMDSNVNS 120

Query: 121 FAGDRRWARIPNHSCFGTNLAHI 142
           F    +    PN  C+   + +I
Sbjct: 121 FLPRCQRRADPNSFCWEIGMLYI 143

[Close]

BLAST of Carg03302 vs. NCBI nr
Match: XP_017624872.1 (PREDICTED: uncharacterized protein LOC108468504 [Gossypium arboreum])

HSP 1 Score: 206.1 bits (523), Expect = 1.2e-49
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLLWS 112
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG+ G LL S
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGYFGMLLGS 111

[Close]

BLAST of Carg03302 vs. NCBI nr
Match: KJB20142.1 (hypothetical protein B456_003G134900 [Gossypium raimondii])

HSP 1 Score: 203.8 bits (517), Expect = 6.0e-49
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLL 110
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF   +L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFQSTML 109

[Close]

BLAST of Carg03302 vs. NCBI nr
Match: XP_022638524.1 (uncharacterized protein LOC106766494 [Vigna radiata var. radiata])

HSP 1 Score: 203.8 bits (517), Expect = 6.0e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFA 106
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFA
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFA 105

[Close]

BLAST of Carg03302 vs. NCBI nr
Match: XP_020580277.1 (uncharacterized protein LOC110024573 [Phalaenopsis equestris])

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF-GGFAGCLLWSMD 114
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF GG A   LWS +
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGGLAFLFLWSFN 114

[Close]

BLAST of Carg03302 vs. TAIR10
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. TAIR10
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. TAIR10
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. TAIR10
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. TAIR10
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. Swiss-Prot
Match: sp|P62785|H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. Swiss-Prot
Match: sp|P59259|H4_ARATH (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. Swiss-Prot
Match: sp|Q6PMI5|H4_CHEMJ (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. Swiss-Prot
Match: sp|Q6WZ83|H4_EUCGL (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. Swiss-Prot
Match: sp|Q6LAF3|H4_FLATR (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg03302 vs. TrEMBL
Match: tr|A0A0D2MND9|A0A0D2MND9_GOSRA (Histone H4 OS=Gossypium raimondii OX=29730 GN=B456_003G134900 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLL 110
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF   +L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFQSTML 109

[Close]

BLAST of Carg03302 vs. TrEMBL
Match: tr|B6T0P4|B6T0P4_MAIZE (Histone H4 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAG 107
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG AG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGQAG 106

[Close]

BLAST of Carg03302 vs. TrEMBL
Match: tr|A0A251S7R1|A0A251S7R1_HELAN (Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0476921 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF 105
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF 104

[Close]

BLAST of Carg03302 vs. TrEMBL
Match: tr|A0A2P5Q8P9|A0A2P5Q8P9_GOSBA (Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_DD32191 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF 105
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGF 104

[Close]

BLAST of Carg03302 vs. TrEMBL
Match: tr|A0A2B4T0B2|A0A2B4T0B2_STYPI (Histone H4 OS=Stylophora pistillata OX=50429 GN=H4DEKL PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFAGCLLWSMDSDVD 118
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG +   +  M+S V+
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGISSKAMGIMNSFVN 117

The following BLAST results are available for this feature:

BLAST of Carg03302 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148325.1	3.4e-52	81.12	uncharacterized protein LOC111017005 [Momordica charantia]	[more]
XP_017624872.1	1.2e-49	96.40	PREDICTED: uncharacterized protein LOC108468504 [Gossypium arboreum]	[more]
KJB20142.1	6.0e-49	96.33	hypothetical protein B456_003G134900 [Gossypium raimondii]	[more]
XP_022638524.1	6.0e-49	100.00	uncharacterized protein LOC106766494 [Vigna radiata var. radiata]	[more]
XP_020580277.1	1.0e-48	93.86	uncharacterized protein LOC110024573 [Phalaenopsis equestris]	[more]

BLAST of Carg03302 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07660.1	2.1e-51	100.00	Histone superfamily protein	[more]
AT1G07820.1	2.1e-51	100.00	Histone superfamily protein	[more]
AT2G28740.1	2.1e-51	100.00	histone H4	[more]
AT3G45930.1	2.1e-51	100.00	Histone superfamily protein	[more]
AT3G53730.1	2.1e-51	100.00	Histone superfamily protein	[more]

BLAST of Carg03302 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P62785\|H41_WHEAT	3.7e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
sp\|P59259\|H4_ARATH	3.7e-50	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
sp\|Q6PMI5\|H4_CHEMJ	3.7e-50	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
sp\|Q6WZ83\|H4_EUCGL	3.7e-50	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
sp\|Q6LAF3\|H4_FLATR	3.7e-50	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Carg03302 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2MND9\|A0A0D2MND9_GOSRA	4.0e-49	96.33	Histone H4 OS=Gossypium raimondii OX=29730 GN=B456_003G134900 PE=3 SV=1	[more]
tr\|B6T0P4\|B6T0P4_MAIZE	1.2e-48	99.06	Histone H4 OS=Zea mays OX=4577 PE=2 SV=1	[more]
tr\|A0A251S7R1\|A0A251S7R1_HELAN	1.5e-48	100.00	Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0476921 PE=3 SV=1	[more]
tr\|A0A2P5Q8P9\|A0A2P5Q8P9_GOSBA	1.5e-48	100.00	Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_DD32191 PE=3 SV=1	[more]
tr\|A0A2B4T0B2\|A0A2B4T0B2_STYPI	2.0e-48	88.03	Histone H4 OS=Stylophora pistillata OX=50429 GN=H4DEKL PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR019809	Histone_H4_CS
IPR009072	Histone-fold
IPR035425	CENP-T/H4_C
IPR001951	Histone_H4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03302-RA	Carg03302-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 97.79 coord: 77..89 score: 90.05 coord: 5..16 score: 95.59 coord: 20..39 score: 93.38 coord: 40..60 score: 93.56 coord: 62..76 score: 95.1
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..101 e-value: 1.9867E-48 score: 154.581
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 39..96 e-value: 8.8E-8 score: 32.1
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..103 e-value: 1.7E-59 score: 200.2
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 3..102
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103
None	No IPR available	PANTHER	PTHR10484:SF160	SUBFAMILY NOT NAMED	coord: 1..103
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03302	ClCG02G020350	Watermelon (Charleston Gray)	carwcgB0327
Carg03302	CmaCh20G004160	Cucurbita maxima (Rimu)	carcmaB0473
Carg03302	CmoCh02G008220	Cucurbita moschata (Rifu)	carcmoB0467
Carg03302	CsGy6G014490	Cucumber (Gy14) v2	carcgybB0350

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03302	Carg20281	Silver-seed gourd	carcarB330

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03302	Cucumber (Chinese Long) v2	carcuB0359
Carg03302	Silver-seed gourd	carcarB186
Carg03302	Silver-seed gourd	carcarB353
Carg03302	Silver-seed gourd	carcarB356
Carg03302	Silver-seed gourd	carcarB360
Carg03302	Silver-seed gourd	carcarB367
Carg03302	Cucumber (Gy14) v2	carcgybB0341
Carg03302	Cucumber (Gy14) v2	carcgybB0345
Carg03302	Cucumber (Gy14) v1	carcgyB0389
Carg03302	Cucumber (Gy14) v1	carcgyB0397
Carg03302	Cucumber (Gy14) v1	carcgyB0396
Carg03302	Cucumber (Gy14) v1	carcgyB0398
Carg03302	Cucurbita maxima (Rimu)	carcmaB0477
Carg03302	Cucurbita maxima (Rimu)	carcmaB0469
Carg03302	Cucurbita maxima (Rimu)	carcmaB0470
Carg03302	Cucurbita maxima (Rimu)	carcmaB0479
Carg03302	Cucurbita maxima (Rimu)	carcmaB0481
Carg03302	Cucurbita maxima (Rimu)	carcmaB0482
Carg03302	Cucurbita moschata (Rifu)	carcmoB0461
Carg03302	Cucurbita moschata (Rifu)	carcmoB0464
Carg03302	Cucurbita moschata (Rifu)	carcmoB0469
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0462
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0468
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0469
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0472
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03302	Cucurbita pepo (Zucchini)	carcpeB0481
Carg03302	Wild cucumber (PI 183967)	carcpiB0363
Carg03302	Wild cucumber (PI 183967)	carcpiB0365
Carg03302	Wild cucumber (PI 183967)	carcpiB0367
Carg03302	Wild cucumber (PI 183967)	carcpiB0369
Carg03302	Wild cucumber (PI 183967)	carcpiB0373
Carg03302	Cucumber (Chinese Long) v2	carcuB0362
Carg03302	Cucumber (Chinese Long) v2	carcuB0364
Carg03302	Cucumber (Chinese Long) v2	carcuB0366
Carg03302	Cucumber (Chinese Long) v2	carcuB0370
Carg03302	Cucumber (Chinese Long) v3	carcucB0364
Carg03302	Cucumber (Chinese Long) v3	carcucB0366
Carg03302	Cucumber (Chinese Long) v3	carcucB0368
Carg03302	Cucumber (Chinese Long) v3	carcucB0374
Carg03302	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03302	Bottle gourd (USVL1VR-Ls)	carlsiB308
Carg03302	Bottle gourd (USVL1VR-Ls)	carlsiB309
Carg03302	Bottle gourd (USVL1VR-Ls)	carlsiB311
Carg03302	Melon (DHL92) v3.5.1	carmeB0338
Carg03302	Melon (DHL92) v3.5.1	carmeB0339
Carg03302	Melon (DHL92) v3.5.1	carmeB0346
Carg03302	Melon (DHL92) v3.5.1	carmeB0348
Carg03302	Melon (DHL92) v3.6.1	carmedB0344
Carg03302	Melon (DHL92) v3.6.1	carmedB0345
Carg03302	Melon (DHL92) v3.6.1	carmedB0353
Carg03302	Melon (DHL92) v3.6.1	carmedB0354
Carg03302	Watermelon (Charleston Gray)	carwcgB0323
Carg03302	Watermelon (Charleston Gray)	carwcgB0331
Carg03302	Watermelon (Charleston Gray)	carwcgB0332
Carg03302	Watermelon (97103) v1	carwmB0321
Carg03302	Watermelon (97103) v1	carwmB0323
Carg03302	Watermelon (97103) v1	carwmB0325
Carg03302	Watermelon (97103) v1	carwmB0330
Carg03302	Watermelon (97103) v2	carwmbB0341
Carg03302	Watermelon (97103) v2	carwmbB0346
Carg03302	Watermelon (97103) v2	carwmbB0351
Carg03302	Watermelon (97103) v2	carwmbB0352
Carg03302	Watermelon (97103) v2	carwmbB0354
Carg03302	Wax gourd	carwgoB0416
Carg03302	Wax gourd	carwgoB0419
Carg03302	Wax gourd	carwgoB0426