Carg03241 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03241
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING/U-box protein
Location	Cucurbita_argyrosperma_scaffold_005 : 817995 .. 819539 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGCTCTCGTGGCTTTGCTTTGGACTTTCCCAAAAGGCCTCATATCAATGGAGAGAGTATTCTTTGATTATAAACTCATGATCATTCCCTGAATTAGCCGATCCGATGTGGGACTTTCATCGTTATGAAAGATCGAAGCTACTAACTTTCAGAGAATCAGATTCTAAAGGTGGGTTTAGTTGAGTCTGCGTCTACTGGAGTGTCAAGGGAGGTGGGCGGAAGTGGCAGTAGTAGTAGGCCACAATTCCCACCATCCTCACGATTCCCTTTCCCTTATTTACTCTGCGAATCTCCCTCCTCCAAAGGCTAAGGCAAAGGGTCTCCTCCTCCTCCTCCATCTCCATGTCTGTCTTTGCTTAATTTCCAGGGAACACAAACTTGTTCTGGTTTTACTCTCTACCAACACAGGACATAAGATGAGTGATGGGACAGTTCCAGATCGTCTCCATAAGGTACTTTCTTCTCTGTTTCTCTGTGTTTTCAATCTTCTTCTATGTTCTAAGTAACTAGTCTGGTGTTTTTCAGGGCGGGGACTTGGCTGGGACAACAACGGAGGGAACCTCCCATGTTAACCATTGGAAGAGAAGGAATCTTGTTCTTGAGATACCTTCTCGGACACCGGATTTTGTTGCAATAAAAACAGCTCAAACATCAAGTCCTACACCTAGGAAAGTGAATTTTATGTTAACACCAACCTCTTCTTCAGATGCTATATCTTCAGGGCCATCTTCTTCATCCAGAGGCAAATCATCCATCAAGACTCTCTTTCCTAAACTTAGCTTCATATACCGAAGTTCCTCGGACGTCGATGAGGCTTCTTCGTCTGCAGGGACACAAGAGAAGGCTAAAGCTTCAAAGCCCTTGTCCATGGCCACGATCTTTACGCCTAGGTCGAAGCAGCAAGCTTCATCACTACCTGTAACTCCTATAGCTCATTATAATCCAGAATCTACACATGATGAAAACAACAAAGGGAGTGAACAGGAATCAGTAGTAAGCACACATGCTAATTTGAGTTTTATTAAGCACTGAAGCTGAATTATCATAGCATTAACACACAAAGACTGCAATTTTATTGTGCAGAGAAGAGGATCTCAGAAACGAATATCTCGCTCCCTTTCTCTTCCAACCAATAACAAGGGAAGAAGCATAAGGAGGACTGATTCATTTTTTCGTGTAATTCCTTCGACCCCACGACCGAAGGAAGGAGATTTGACATTGAATACTTCTACAACAGTAGAAATAGGTAAACTGGCCAGACTTCACACTCTGATTTGTTTCCATTTAGTTACAGGAAAGAGGTGGTAATTATATACTTATTGATCCTATAGTATCCAATGATTTTGCTGGGAAGAAAAAAAGCATGTACGGTCTCTTGTTCTATCAACATTTAAGGGTAAACAACTCTCTTAAATCCAATATTGTAGAAGATGTCAATCTCATTTCAATCTCATGGTCCAGAAAATAAAGATTCCAATGGTGAAGACATCTCTGAAGAAGACGCTGTTTGCAGAATCTGCATGGTTGAAGCTGTTAGTGGGTG

mRNA sequence

ATAAGCTCTCGTGGCTTTGCTTTGGACTTTCCCAAAAGGCCTCATATCAATGGAGAGAGTATTCTTTGATTATAAACTCATGATCATTCCCTGAATTAGCCGATCCGATGTGGGACTTTCATCGTTATGAAAGATCGAAGCTACTAACTTTCAGAGAATCAGATTCTAAAGGTGGGTTTAGTTGAGTCTGCGTCTACTGGAGTGTCAAGGGAGGTGGGCGGAAGTGGCAGTAGTAGTAGGCCACAATTCCCACCATCCTCACGATTCCCTTTCCCTTATTTACTCTGCGAATCTCCCTCCTCCAAAGGCTAAGGCAAAGGGTCTCCTCCTCCTCCTCCATCTCCATGTCTGTCTTTGCTTAATTTCCAGGGAACACAAACTTGTTCTGGTTTTACTCTCTACCAACACAGGACATAAGATGAGTGATGGGACAGTTCCAGATCGTCTCCATAAGGGCGGGGACTTGGCTGGGACAACAACGGAGGGAACCTCCCATGTTAACCATTGGAAGAGAAGGAATCTTGTTCTTGAGATACCTTCTCGGACACCGGATTTTGTTGCAATAAAAACAGCTCAAACATCAAGTCCTACACCTAGGAAAGTGAATTTTATGTTAACACCAACCTCTTCTTCAGATGCTATATCTTCAGGGCCATCTTCTTCATCCAGAGGCAAATCATCCATCAAGACTCTCTTTCCTAAACTTAGCTTCATATACCGAAGTTCCTCGGACGTCGATGAGGCTTCTTCGTCTGCAGGGACACAAGAGAAGGCTAAAGCTTCAAAGCCCTTGTCCATGGCCACGATCTTTACGCCTAGGTCGAAGCAGCAAGCTTCATCACTACCTGTAACTCCTATAGCTCATTATAATCCAGAATCTACACATGATGAAAACAACAAAGGGAGTGAACAGGAATCAGTAGTAAGCACACATGCTAATTTGAGTTTTATTAAGCACTGAAGCTGAATTATCATAGCATTAACACACAAAGACTGCAATTTTATTGTGCAGAGAAGAGGATCTCAGAAACGAATATCTCGCTCCCTTTCTCTTCCAACCAATAACAAGGGAAGAAGCATAAGGAGGACTGATTCATTTTTTCGTGTAATTCCTTCGACCCCACGACCGAAGGAAGGAGATTTGACATTGAATACTTCTACAACAGTAGAAATAGAAAATAAAGATTCCAATGGTGAAGACATCTCTGAAGAAGACGCTGTTTGCAGAATCTGCATGGTTGAAGCTGTTAGTGGGTG

Coding sequence (CDS)

ATGAGTGATGGGACAGTTCCAGATCGTCTCCATAAGGGCGGGGACTTGGCTGGGACAACAACGGAGGGAACCTCCCATGTTAACCATTGGAAGAGAAGGAATCTTGTTCTTGAGATACCTTCTCGGACACCGGATTTTGTTGCAATAAAAACAGCTCAAACATCAAGTCCTACACCTAGGAAAGTGAATTTTATGTTAACACCAACCTCTTCTTCAGATGCTATATCTTCAGGGCCATCTTCTTCATCCAGAGGCAAATCATCCATCAAGACTCTCTTTCCTAAACTTAGCTTCATATACCGAAGTTCCTCGGACGTCGATGAGGCTTCTTCGTCTGCAGGGACACAAGAGAAGGCTAAAGCTTCAAAGCCCTTGTCCATGGCCACGATCTTTACGCCTAGGTCGAAGCAGCAAGCTTCATCACTACCTGTAACTCCTATAGCTCATTATAATCCAGAATCTACACATGATGAAAACAACAAAGGGAGTGAACAGGAATCAGTAGTAAGCACACATGCTAATTTGAGTTTTATTAAGCACTGA

Protein sequence

MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPRKVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESVVSTHANLSFIKH

Homology

[Close]

BLAST of Carg03241 vs. NCBI nr
Match: XP_022944674.1 (uncharacterized protein LOC111449062 [Cucurbita moschata])

HSP 1 Score: 319.3 bits (817), Expect = 8.3e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60
           MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR
Sbjct: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60

Query: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120
           KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK
Sbjct: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120

Query: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV
Sbjct: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 168

[Close]

BLAST of Carg03241 vs. NCBI nr
Match: XP_023513397.1 (uncharacterized protein LOC111777897 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 2.4e-83
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60
           MSDGTVPDRLHKGG+LAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR
Sbjct: 1   MSDGTVPDRLHKGGELAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60

Query: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120
           KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK
Sbjct: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120

Query: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV
Sbjct: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 168

[Close]

BLAST of Carg03241 vs. NCBI nr
Match: XP_023513398.1 (uncharacterized protein LOC111777897 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 2.4e-83
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60
           MSDGTVPDRLHKGG+LAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR
Sbjct: 1   MSDGTVPDRLHKGGELAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60

Query: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120
           KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK
Sbjct: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVDEASSSAGTQEKAK 120

Query: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV
Sbjct: 121 ASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 168

[Close]

BLAST of Carg03241 vs. NCBI nr
Match: XP_022986134.1 (uncharacterized protein LOC111483971 isoform X3 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 4.4e-77
Identity = 162/175 (92.57%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60
           MSDGTVPD LHKGGDLAG TTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR
Sbjct: 1   MSDGTVPDSLHKGGDLAG-TTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60

Query: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVD-------EASSSA 120
           KVNFMLTPTSSSDAISSGPSSSSRGKSSIKT+FPKLSFIYRSSSDV+       EASSSA
Sbjct: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTIFPKLSFIYRSSSDVEAMSSLVSEASSSA 120

Query: 121 GTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           G QEKAKASKPLSMATIFTPR KQQASSLPVTPIAHYNPESTHDENNKGSEQESV
Sbjct: 121 GKQEKAKASKPLSMATIFTPRLKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 174

[Close]

BLAST of Carg03241 vs. NCBI nr
Match: XP_022986133.1 (uncharacterized protein LOC111483971 isoform X2 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 4.4e-77
Identity = 162/175 (92.57%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MSDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60
           MSDGTVPD LHKGGDLAG TTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR
Sbjct: 1   MSDGTVPDSLHKGGDLAG-TTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPR 60

Query: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTLFPKLSFIYRSSSDVD-------EASSSA 120
           KVNFMLTPTSSSDAISSGPSSSSRGKSSIKT+FPKLSFIYRSSSDV+       EASSSA
Sbjct: 61  KVNFMLTPTSSSDAISSGPSSSSRGKSSIKTIFPKLSFIYRSSSDVEAMSSLVSEASSSA 120

Query: 121 GTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           G QEKAKASKPLSMATIFTPR KQQASSLPVTPIAHYNPESTHDENNKGSEQESV
Sbjct: 121 GKQEKAKASKPLSMATIFTPRLKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 174

[Close]

BLAST of Carg03241 vs. TAIR10
Match: AT3G09760.1 (RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 0


Query: 32  RRNLVLEIPSRTP------DFVAIKTAQTSSPTPRKVNF--MLTPTSSSDAISSGPS--- 91
           RR LVL++PS TP      D      + TSSP  ++VNF  M +P       S  PS   
Sbjct: 47  RRGLVLDLPSTTPEDTTRDDLFRRNASLTSSPVAKRVNFSPMSSPRVGQRGASLSPSXXX 106

Query: 92  --SSSRGKSSIKTLFPKLSFIYRSSS----DVDEASS----SAGTQEKAKASKPLSMATI 151
                   +S+K L PKLSF  R+S+    D+++A+     S+ +    +     ++  I
Sbjct: 107 XXXXXNKPNSLKNLIPKLSFKNRNSNNDNVDIEKAADLGFVSSPSSGNGRDRSTWTLTNI 166

Query: 152 FTPRSKQQASSLPVTPIAHYNPESTH 157
            TPR K +  SLPVTPIAH NPESTH
Sbjct: 167 LTPRLK-KTESLPVTPIAHSNPESTH 191

[Close]

BLAST of Carg03241 vs. TAIR10
Match: AT5G60580.2 (RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-09
Identity = 53/147 (36.05%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 20  TTEGTSHVNHWKRRNLVLEIPSRT-----PDFVAIKTAQTSSPTPRKVNFMLTPTSSSDA 79
           T + +++V  W+R+NL L+IPSR       D V IK   T                    
Sbjct: 32  TEDTSANVQQWRRKNLSLQIPSRAAGLSPEDSVVIKMPPT-XXXXXXXXXXXXXXXXXXX 91

Query: 80  ISSGPSSSSRGKSSIKTLFPKLSFIYR-SSSDVDE----ASSSAGTQEKAKASKPLSMAT 139
                S   RGKSS+K L PK     + S++D+++    A S   +QEKA  S+ LS++ 
Sbjct: 92  XXXXXSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASISRSLSLSK 151

Query: 140 IFTPRSKQQASSLPVTPIAHYNPESTH 157
           +FTPR K + SSLPVTP+   N ES H
Sbjct: 152 LFTPRIK-RTSSLPVTPVILSNSESAH 176

[Close]

BLAST of Carg03241 vs. TrEMBL
Match: tr|A0A0A0KAS0|A0A0A0KAS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140830 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 128/176 (72.73%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 2   SDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPRK 61
           SDG V + LHK  D AGT        NHWK+RNL LEIPSRT DFVAIK   TSSPTPRK
Sbjct: 12  SDGAVSEHLHKAEDSAGT--------NHWKKRNLFLEIPSRTTDFVAIKMPPTSSPTPRK 71

Query: 62  VNFMLTPTSSSDAISSGPS--SSSRGKSSIKTLFPKLSFIYRSSSDVD-------EASSS 121
           VNF+LTPT SSDAI+SG S  SSSRGKSSIKTLFPKLSFIYRSSSDV+       EASSS
Sbjct: 72  VNFVLTPT-SSDAIASGSSGPSSSRGKSSIKTLFPKLSFIYRSSSDVEAVSSLVSEASSS 131

Query: 122 AGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           +GT EK++  KPLS+AT+FTPRSK QASSLPVTPIAH N ESTHDE NK SEQESV
Sbjct: 132 SGTHEKSQGLKPLSVATMFTPRSK-QASSLPVTPIAHCNSESTHDE-NKESEQESV 176

[Close]

BLAST of Carg03241 vs. TrEMBL
Match: tr|A0A1S3CLW6|A0A1S3CLW6_CUCME (uncharacterized protein LOC103501946 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501946 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 127/176 (72.16%), Postives = 137/176 (77.84%), Query Frame = 0


Query: 2   SDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPRK 61
           SDG V D LHK G  AGT        NHWK+RNL LEIPSRT DFVAIK   TSSPTPRK
Sbjct: 12  SDGAVSDHLHKAGGSAGT--------NHWKKRNLFLEIPSRTTDFVAIKMPPTSSPTPRK 71

Query: 62  VNFMLTPTSSSDAISSGPS--SSSRGKSSIKTLFPKLSFIYRSSSDVD-------EASSS 121
           VNF+LTPT SSDAI+SG S  SSSRGKSSIKTLFPKLSFIYRSS DV+       EASSS
Sbjct: 72  VNFVLTPT-SSDAIASGSSGPSSSRGKSSIKTLFPKLSFIYRSSPDVEAVSSLVSEASSS 131

Query: 122 AGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           +GT EK++  KPLS+AT+FTPRSK QASSLPVTP+AH N ESTHDE NK SEQESV
Sbjct: 132 SGTHEKSQGLKPLSVATMFTPRSK-QASSLPVTPVAHSNSESTHDE-NKESEQESV 176

[Close]

BLAST of Carg03241 vs. TrEMBL
Match: tr|A0A1S3CKV2|A0A1S3CKV2_CUCME (uncharacterized protein LOC103501946 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501946 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 127/176 (72.16%), Postives = 137/176 (77.84%), Query Frame = 0


Query: 2   SDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRTPDFVAIKTAQTSSPTPRK 61
           SDG V D LHK G  AGT        NHWK+RNL LEIPSRT DFVAIK   TSSPTPRK
Sbjct: 12  SDGAVSDHLHKAGGSAGT--------NHWKKRNLFLEIPSRTTDFVAIKMPPTSSPTPRK 71

Query: 62  VNFMLTPTSSSDAISSGPS--SSSRGKSSIKTLFPKLSFIYRSSSDVD-------EASSS 121
           VNF+LTPT SSDAI+SG S  SSSRGKSSIKTLFPKLSFIYRSS DV+       EASSS
Sbjct: 72  VNFVLTPT-SSDAIASGSSGPSSSRGKSSIKTLFPKLSFIYRSSPDVEAVSSLVSEASSS 131

Query: 122 AGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGSEQESV 169
           +GT EK++  KPLS+AT+FTPRSK QASSLPVTP+AH N ESTHDE NK SEQESV
Sbjct: 132 SGTHEKSQGLKPLSVATMFTPRSK-QASSLPVTPVAHSNSESTHDE-NKESEQESV 176

[Close]

BLAST of Carg03241 vs. TrEMBL
Match: tr|A0A2P4KTL9|A0A2P4KTL9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49741 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 3   DGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRT-----PDFVAIKTAQTSSP 62
           + T+   +HK  D  G T E T +V+HWKRRNL LEIPSRT      DFV IK + T +P
Sbjct: 20  EATIVVPVHKAEDSMGITEE-TPNVHHWKRRNLFLEIPSRTSGEPSQDFVGIKISSTPTP 79

Query: 63  TPRKVNFMLTPTSSSDAISSGPS-SSSRGKSSIKTLFPKLSFIYRSSSDVDEA------S 122
           TP+KVNF+ TP  S + I+  P  SS+RGKSSI+ L PKLSF+YR+SSDV++A      +
Sbjct: 80  TPKKVNFLPTPGYSDERITGSPGPSSTRGKSSIRNLLPKLSFMYRTSSDVEKATNLASEA 139

Query: 123 SSAGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTH 157
           SS G QEK   S+  S+  IFTPR K + SSLPVTPIAH N ES H
Sbjct: 140 SSTGAQEKPLISRSYSLTKIFTPRVK-RTSSLPVTPIAHSNLESVH 183

[Close]

BLAST of Carg03241 vs. TrEMBL
Match: tr|M5WAP9|M5WAP9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G100700 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.6e-30
Identity = 98/191 (51.31%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 2   SDGTVPDRLHKGGDLAGTTTEGTSHVNHWKRRNLVLEIPSRT-----PDFVAIKTAQTSS 61
           + GT+   +HK  D  G T E    V+ WKR+NL LEIPSRT      DFVAIK   T S
Sbjct: 24  TQGTIAVPVHKIEDSMGVTEE-APQVHPWKRQNLYLEIPSRTSEDCVEDFVAIKMPPTPS 83

Query: 62  PTPRKVNFMLTPTSSSDAISSGPS-SSSRGKSSIKTLFPKLSFIYRSSSDVDEAS----- 121
           PTPRKVNF+LTP S    +S  P  SS++GKSSIK LFPKLSF YRSSSD+++AS     
Sbjct: 84  PTPRKVNFLLTPGSIDARVSGSPGPSSAKGKSSIKALFPKLSFKYRSSSDIEKASNLASE 143

Query: 122 -SSAGTQEKAKASKPLSMATIFTPRSKQQASSLPVTPIAHYNPESTHDENNKGS----EQ 177
            SS G +EK   S+ LS+  +FTPR + + SSLPVTPIA  +PES H  +  GS     +
Sbjct: 144 GSSTGAREKPSISRSLSLTKLFTPRMR-RTSSLPVTPIALSHPESAHGGSVGGSLTSIRK 203

The following BLAST results are available for this feature:

BLAST of Carg03241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944674.1	8.3e-84	100.00	uncharacterized protein LOC111449062 [Cucurbita moschata]	[more]
XP_023513397.1	2.4e-83	99.40	uncharacterized protein LOC111777897 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023513398.1	2.4e-83	99.40	uncharacterized protein LOC111777897 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022986134.1	4.4e-77	92.57	uncharacterized protein LOC111483971 isoform X3 [Cucurbita maxima]	[more]
XP_022986133.1	4.4e-77	92.57	uncharacterized protein LOC111483971 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg03241 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09760.1	3.3e-10	37.67	RING/U-box superfamily protein	[more]
AT5G60580.2	6.2e-09	36.05	RING/U-box superfamily protein	[more]

BLAST of Carg03241 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAS0\|A0A0A0KAS0_CUCSA	1.5e-49	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140830 PE=4 SV=1	[more]
tr\|A0A1S3CLW6\|A0A1S3CLW6_CUCME	2.0e-49	72.16	uncharacterized protein LOC103501946 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CKV2\|A0A1S3CKV2_CUCME	2.0e-49	72.16	uncharacterized protein LOC103501946 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4KTL9\|A0A2P4KTL9_QUESU	2.0e-30	54.22	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49741 PE=4 SV=1	[more]
tr\|M5WAP9\|M5WAP9_PRUPE	4.6e-30	51.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G100700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03241-RA	Carg03241-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03241	Cla008744	Watermelon (97103) v1	carwmB0330
Carg03241	Cp4.1LG16g05450	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03241	Cla97C02G047170	Watermelon (97103) v2	carwmbB0346
Carg03241	Cla97C03G053200	Watermelon (97103) v2	carwmbB0350
Carg03241	Bhi10G000450	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03241	Carg22602	Silver-seed gourd	carcarB256
Carg03241	Carg12319	Silver-seed gourd	carcarB355

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03241	Silver-seed gourd	carcarB187
Carg03241	Silver-seed gourd	carcarB287
Carg03241	Cucumber (Gy14) v2	carcgybB0344
Carg03241	Cucumber (Gy14) v2	carcgybB0351
Carg03241	Cucumber (Gy14) v1	carcgyB0400
Carg03241	Cucumber (Gy14) v1	carcgyB0403
Carg03241	Cucurbita maxima (Rimu)	carcmaB0477
Carg03241	Cucurbita maxima (Rimu)	carcmaB0467
Carg03241	Cucurbita maxima (Rimu)	carcmaB0473
Carg03241	Cucurbita maxima (Rimu)	carcmaB0482
Carg03241	Cucurbita moschata (Rifu)	carcmoB0460
Carg03241	Cucurbita moschata (Rifu)	carcmoB0464
Carg03241	Cucurbita moschata (Rifu)	carcmoB0467
Carg03241	Cucurbita moschata (Rifu)	carcmoB0469
Carg03241	Cucurbita pepo (Zucchini)	carcpeB0469
Carg03241	Cucurbita pepo (Zucchini)	carcpeB0477
Carg03241	Wild cucumber (PI 183967)	carcpiB0366
Carg03241	Wild cucumber (PI 183967)	carcpiB0374
Carg03241	Cucumber (Chinese Long) v2	carcuB0363
Carg03241	Cucumber (Chinese Long) v2	carcuB0371
Carg03241	Cucumber (Chinese Long) v3	carcucB0367
Carg03241	Cucumber (Chinese Long) v3	carcucB0375
Carg03241	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03241	Melon (DHL92) v3.5.1	carmeB0340
Carg03241	Melon (DHL92) v3.5.1	carmeB0347
Carg03241	Melon (DHL92) v3.6.1	carmedB0346
Carg03241	Melon (DHL92) v3.6.1	carmedB0352
Carg03241	Watermelon (Charleston Gray)	carwcgB0324
Carg03241	Watermelon (Charleston Gray)	carwcgB0327
Carg03241	Watermelon (97103) v1	carwmB0322
Carg03241	Watermelon (97103) v1	carwmB0325
Carg03241	Watermelon (97103) v2	carwmbB0340
Carg03241	Wax gourd	carwgoB0415