Carg03234 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03234
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin response factor
Location	Cucurbita_argyrosperma_scaffold_005 : 761701 .. 764596 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTCCTTCCTCCTTCCTCTGTTTTCTTTCACATTGTTTGTTTGGTTATTTTGTTGGTTTCCTCCAACCCTGAGAGACCCCTCACTATTTGGGATCTAAACTCATTTCCACAGATCGCCGCCGGATCATCGTCCTTCATTCAATCTTTACCCATTCAGTTTCTTTTCTTTTTCACGAACCAACGCTTCCGCCGCCCTCGGTTTCACTGTGGATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGTCTGTTTTGAAATTTCATTTTCTGGGTTGTACTTCGATTATGCGGTAGAACACGCTGAATCTGAGCGTTTTGGGCTTGATTATCGCATTCAGACTCTGAGCTCTTCCCCTGTTCTTCTTTTTCTTCTGCTACTCTTCGAATAGGCGAATCTGTTCGTTCTTTTCAATCGAGGAAGCTGTATTTTCGGCGATTTTAAGGTAACATTGAATCCCGATTCTGTTCCTTCTCTGTTGTGTTCATTAACTTTAATTCCTTTAGGCTCTTTCGCCTGCTCGGAAATTAAAACACCCAGAATGTATAATGTCGTTCTGCTTTGAAAAGCTCTGTTTCTCATTTGTTTTCTCTGTTTTTCCCCTTTCTCAGGCATTCAAATGAAAGAAGCAGAGAAAATCTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCAGAATCCCGCCTCTTATTCTTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCCTGAAACGGATGAAGTTTTTGCTAATGTAAGTTTGGTTCCACTGGCGAACAACGACCTTAATTTTGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCGGATAATAACATGGAGAAGCCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGACTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTTCACGGTGAGGTTTGGAAGTTCCGGCATATTTACAGGGGAACACCTCGCCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTGAATCAGAAAAAGCTCGTCGCCGGCGATTCTATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGCGTCGGAATCCGGCGAGCCAAACGGGCAATAGGGTGTGCCGCCGATCACCCATATGGCTGGAATCCCGGCGGTGGAACTTGTTTCCCCCCATGTGGTGGATTGACGATGTTTCTGAGAGACGAAGACAACAACAAGTTGAGTAGAAAAGGGTCTGTAAGTTCCACTGGCGGCGGTGGGAATTTGAGGGGAAAAAGCAAAATAAGGCCGGAATCAGTGATCGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCTCGTGCCAGCACGCCGGAGTTCTGTGTCAAGGCCTCATCGGTGCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGATTCAAAATGCCATTTGAAACAGAGGATTCTTCTCGGATCAGTTGGTTCATGGGAACCACTTCCTCTGTTCAAGTAGCTGACCCAATCCGTTGGCCTAATTCTCCATGGCGGCTCCTCCAGGTCTCCTTGAAGTTCATTTCTTCATCTTGAAAACATCGGTTTATGATTGTTCTTGAATTTTTGGTTTATGATTCTTCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGGGTTAGCCCGTGGTTAGTCGAGCTCGTATCGAACATGCCCGTCATTCAATTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACACCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCGTCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTTCATTTTCACTCTAGAATTTCCAATACAGACCATACTCGGAGCTCATTGGCGTTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGATTCGGTGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATTGGCTCGTACGAAGAACTATACAGGAGGCTCGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGGTATCAACAATTCTGGTAGTTTGATACCATCTTCACTTGCATTGCTATCAACTTATATCAACTGTTCTTCCTTGTGGCTTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCAACAAGATGGGAAGAAGGTATGGATGAACTTCCCATGCATTTCTTGCTGCCATTTGTGTGTTGGAGAAAATAATGGATGAACGTTGAACATGATTTTGTAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGGACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG

mRNA sequence

ATTCCTCCTTCCTCCTTCCTCTGTTTTCTTTCACATTGTTTGTTTGGTTATTTTGTTGGTTTCCTCCAACCCTGAGAGACCCCTCACTATTTGGGATCTAAACTCATTTCCACAGATCGCCGCCGGATCATCGTCCTTCATTCAATCTTTACCCATTCAGTTTCTTTTCTTTTTCACGAACCAACGCTTCCGCCGCCCTCGGTTTCACTGTGGATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGTCTGTTTTGAAATTTCATTTTCTGGGTTGTACTTCGATTATGCGGTAGAACACGCTGAATCTGAGCGTTTTGGGCTTGATTATCGCATTCAGACTCTGAGCTCTTCCCCTGTTCTTCTTTTTCTTCTGCTACTCTTCGAATAGGCGAATCTGTTCGTTCTTTTCAATCGAGGAAGCTGTATTTTCGGCGATTTTAAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGGGTTAGCCCGTGGTTAGTCGAGCTCGTATCGAACATGCCCGTCATTCAATTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACACCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCGTCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTTCATTTTCACTCTAGAATTTCCAATACAGACCATACTCGGAGCTCATTGGCGTTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGATTCGGTGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATTGGCTCGTACGAAGAACTATACAGGAGGCTCGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCAACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGGACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG

Coding sequence (CDS)

ATGCCCGTCATTCAATTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACACCACCCAGACGTTCCTCTCGACAGCCAATTCCCGCTGTCGTCGTCGTCGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTTCATTTTCACTCTAGAATTTCCAATACAGACCATACTCGGAGCTCATTGGCGTTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGATTCGGTGAAGAAGAAGCATCAGTTTGTACTCTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATTGGCTCGTACGAAGAACTATACAGGAGGCTCGCCAACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGACTAACGATTTTAACAGACGAATCGGGTTCCAACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTAAGTGGTGAGAATGGACGACTAGATGCCTCAAACAAGACTGGTCCCTTGAGCATATTGGCCTAG

Protein sequence

MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSLALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNKMGRRTLMDGVLSGENGRLDASNKTGPLSILA

Homology

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BLAST of Carg03234 vs. NCBI nr
Match: XP_023512450.1 (auxin response factor 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 562.0 bits (1447), Expect = 1.2e-156
Identity = 282/286 (98.60%), Postives = 283/286 (98.95%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFSSPRKKFRLP HPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 391 MPVIQLSPFSSPRKKFRLPQHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 450

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSLALLNGEKTGP 120
           IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSS ALLNGEKTGP
Sbjct: 451 IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSSALLNGEKTGP 510

Query: 121 KLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES 180
           KLERSDS KKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES
Sbjct: 511 KLERSDSAKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES 570

Query: 181 EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 240
           EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT
Sbjct: 571 EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 630

Query: 241 ARRLTILTDESGSNKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 287
           ARRLTILTDESGS+KMGRRTLMDGVLSGENGRLDASNKTGPLSILA
Sbjct: 631 ARRLTILTDESGSDKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 676

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BLAST of Carg03234 vs. NCBI nr
Match: XP_022943597.1 (auxin response factor 10 [Cucurbita moschata])

HSP 1 Score: 560.1 bits (1442), Expect = 4.4e-156
Identity = 281/286 (98.25%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFSSPRKKFRLP HPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 391 MPVIQLSPFSSPRKKFRLPQHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 450

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSLALLNGEKTGP 120
           IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSR SNTDHTRSS ALLNGEKTGP
Sbjct: 451 IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRFSNTDHTRSSSALLNGEKTGP 510

Query: 121 KLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES 180
           KLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDT+LGLDIGHCKVFMES
Sbjct: 511 KLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTKLGLDIGHCKVFMES 570

Query: 181 EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 240
           EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT
Sbjct: 571 EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 630

Query: 241 ARRLTILTDESGSNKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 287
           ARRLTILTDESGSNKMGRRTLMDGVLSGEN RLDASNKTGPLSILA
Sbjct: 631 ARRLTILTDESGSNKMGRRTLMDGVLSGENARLDASNKTGPLSILA 676

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BLAST of Carg03234 vs. NCBI nr
Match: XP_022985548.1 (auxin response factor 18 [Cucurbita maxima])

HSP 1 Score: 552.4 bits (1422), Expect = 9.2e-154
Identity = 278/286 (97.20%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFSSPRKKFRLP  PD+PLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 391 MPVIQLSPFSSPRKKFRLPQIPDIPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 450

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSLALLNGEKTGP 120
           IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSS ALLNGEKTGP
Sbjct: 451 IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSSALLNGEKTGP 510

Query: 121 KLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES 180
           KLERSDSVKKKHQF+LFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES
Sbjct: 511 KLERSDSVKKKHQFLLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMES 570

Query: 181 EDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 240
           EDVGRTLNLSVI SYEELYRRLA MFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT
Sbjct: 571 EDVGRTLNLSVISSYEELYRRLAYMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKT 630

Query: 241 ARRLTILTDESGSNKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 287
           ARRLTILTDESGS+KMGRRTLMDGVLSGENGRLDASNKTGPLSILA
Sbjct: 631 ARRLTILTDESGSDKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 676

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BLAST of Carg03234 vs. NCBI nr
Match: XP_008463952.1 (PREDICTED: auxin response factor 18 [Cucumis melo])

HSP 1 Score: 458.8 bits (1179), Expect = 1.4e-125
Identity = 258/334 (77.25%), Postives = 266/334 (79.64%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFS PRKKFRLP HPD PLDSQFPL   SSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 390 MPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPL---SSSFSSNTLRPSSPMCCLSDNTSVG 449

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISN---TDH----TRSSLALL 120
           IQGARHT FGISLSDFHLNNKLQLGLVPSSFQQ+ FHSRISN   TDH    + +S  LL
Sbjct: 450 IQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLL 509

Query: 121 NGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIH----------------- 180
           NGEKTGPKLERSDSV KKHQF+LFGQPILTEQQI CSSSSDIH                 
Sbjct: 510 NGEKTGPKLERSDSV-KKHQFLLFGQPILTEQQITCSSSSDIHSPRTEKSSSDVNVERVK 569

Query: 181 ------------QVSPNKSD------------TELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       Q+SPNKS             TELGLDIGHCKVFMESEDVGRTLNLSVI
Sbjct: 570 FHSDGSGSAFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVI 629

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
            SYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD SG
Sbjct: 630 SSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD-SG 689

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BLAST of Carg03234 vs. NCBI nr
Match: NP_001275525.1 (auxin response factor 18-like [Cucumis sativus] >XP_011656307.1 PREDICTED: auxin response factor 18-like isoform X1 [Cucumis sativus] >AGQ53957.1 auxin response factor 10a [Cucumis sativus] >KGN46842.1 hypothetical protein Csa_6G141390 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 4.5e-124
Identity = 257/334 (76.95%), Postives = 264/334 (79.04%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFS PRKKFRLP HPD PLDSQFPL   SSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 390 MPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPL---SSSFSSNTLRPSSPMCCLSDNTSVG 449

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISN---TDH----TRSSLALL 120
           IQGARHT FGISLSDFHLNNKLQLGLVPSSFQQ+ FHSRISN   TDH    + +S  L 
Sbjct: 450 IQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLQ 509

Query: 121 NGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDI------------------ 180
           NGEKTGPKLERSDSV KKHQF+LFGQPILTEQQI CSSSSDI                  
Sbjct: 510 NGEKTGPKLERSDSV-KKHQFLLFGQPILTEQQITCSSSSDIRSPPTEKSSSDVNLERVK 569

Query: 181 -----------HQVSPNKSD------------TELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       QVSPNKS             TELGLDIGHCKVFMESEDVGRTLNLSVI
Sbjct: 570 FLSHGSGSTFKQQVSPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVI 629

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
            SYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD SG
Sbjct: 630 SSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD-SG 689

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BLAST of Carg03234 vs. TAIR10
Match: AT2G28350.1 (auxin response factor 10)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 144/318 (45.28%), Postives = 189/318 (59.43%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPL-DSQFPLSSSSSSFSSNTLRPSSPMCCLS---DN 60
           MP I LSPF SPRKK R+P   + P   ++FP+   S  F++N       MC LS   +N
Sbjct: 386 MPTIHLSPF-SPRKKIRIPQPFEFPFHGTKFPI--FSPGFANN--GGGESMCYLSNDNNN 445

Query: 61  TSVGIQGARHTH--FG---------ISLSDFHLNNKLQL-GLVPSSFQQLHFHSRI---S 120
              GIQGAR     FG         ++LS +  NNKL    +  SSF   H H +     
Sbjct: 446 APAGIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSE 505

Query: 121 NTDHTRSSLALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPN 180
           N+++   SL + N      K +   SV K HQFVLFGQPILTEQQ+  +    + + +  
Sbjct: 506 NSNNISCSLTMGNPAMVQDKKKSVGSV-KTHQFVLFGQPILTEQQV-MNRKRFLEEEAEA 565

Query: 181 KSDTEL------------GLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGM- 240
           + +  L            GL+ GHCKVFMESEDVGRTL+LSVIGSY+ELYR+LA MF + 
Sbjct: 566 EEEKGLVARGLTWNYSLQGLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIE 625

Query: 241 EKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNKMGRRTLMDGVLSG 287
           E+ D+L+HV+Y+DA G +K+ GD+PFSDF+K  +RLTI  D  G N   R+T + G+ +G
Sbjct: 626 ERSDLLTHVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNV--RKTWITGIRTG 685

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BLAST of Carg03234 vs. TAIR10
Match: AT4G30080.1 (auxin response factor 16)

HSP 1 Score: 169.5 bits (428), Expect = 3.1e-42
Identity = 115/284 (40.49%), Postives = 153/284 (53.87%), Query Frame = 0


Query: 4   IQLSPFSSPRKKFRLPHHPDV-PLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQ 63
           I L+ FS PRKK RLP HPD   L +  P+     SF SN L  SSP+  + DN  VG+Q
Sbjct: 391 IPLTSFSPPRKKMRLPQHPDYNNLINSIPV----PSFPSNPLIRSSPLSSVLDNVPVGLQ 450

Query: 64  GARHT---HFGISLSDFHLNNKLQLGLVPSSFQ-QLHFHSRISNTDHTRSSLALLNGEKT 123
           GARH    ++G+S                     QL     + N D             T
Sbjct: 451 GARHNAHQYYGLSXXXXXXXXXXXXXXXXXXXXLQLSPSLGLRNIDTKNEKGFCFLTMGT 510

Query: 124 GPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQV-------------------- 183
            P    +D+  KK   VLFG+ IL E+Q+    S+D   +                    
Sbjct: 511 TP---CNDTKSKKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREF 570

Query: 184 ------SP--NKSDTELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEK 243
                 SP   K     GL+ GHCKVFMES+DVGRTL+LSV+GSYEEL R+L++MFG++K
Sbjct: 571 SSSDEGSPCSKKVHDASGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKK 630

Query: 244 PDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSN 255
            ++LS VLY+DA+GA+K AG++PFS+F+KTARRLTILT++   +
Sbjct: 631 SEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTEQGSES 667

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BLAST of Carg03234 vs. TAIR10
Match: AT1G59750.1 (auxin response factor 1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-06
Identity = 34/118 (28.81%), Postives = 55/118 (46.61%), Query Frame = 0


Query: 139 QPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHC-KVFMESEDVGRTLNLSVIGSYEE 198
           +P+   Q    S S D  + S           I  C KV M+   VGR ++L+    YE+
Sbjct: 509 EPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYED 568

Query: 199 LYRRLANMFGMEKPDILS-----HVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDE 251
           L+++L  MF + K ++L       V+Y D    +   GD P+++F    R++ I T E
Sbjct: 569 LFKKLEEMFDI-KGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPE 625

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BLAST of Carg03234 vs. TAIR10
Match: AT1G15050.1 (indole-3-acetic acid inducible 34)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 172 GHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILS--------HVLYQDAT 231
           G+ KV M+   VGR + +   GSY  L  +L +MFGM+    L          ++Y+D  
Sbjct: 93  GYVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLVYRDEE 152

Query: 232 GAVKQAGDKPFSDFIKTARRLTI 247
           G  + AGD P+++FI++  RL I
Sbjct: 153 GLWRNAGDVPWNEFIESVERLRI 175

[Close]

BLAST of Carg03234 vs. TAIR10
Match: AT2G46530.3 (auxin response factor 11)

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06
Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 175 KVFMESEDVGRTLNLSVIGSYEELYRRLANMFGME---KPDILSHVLYQDATGAVKQAGD 234
           KV M+   VGR ++L+++ SY+EL + L  MF +E    P     +++ D  G     GD
Sbjct: 515 KVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVFTDDEGDRMLVGD 574

Query: 235 KPFSDFIKTARRLTILTDESGSNKMGRRTLM 263
            P+++F K A++L I   +    KM  ++L+
Sbjct: 575 DPWNEFCKMAKKLFIYPSDE-VKKMRSKSLL 604

[Close]

BLAST of Carg03234 vs. Swiss-Prot
Match: sp|Q653H7|ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF18 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.5e-59
Identity = 138/302 (45.70%), Postives = 172/302 (56.95%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTL-RPSSPMCCLSDNTSV 60
           MP I L+PFS PRKK  +P +P++P+D QFP    +  F  N L R   PMC   D T  
Sbjct: 401 MPAIHLAPFSPPRKKLCVPLYPELPIDGQFP----TPMFHGNPLARGVGPMCYFPDGTPA 460

Query: 61  GIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSR-------ISNTDHTRSSLAL 120
           GIQGARH  FGISLSD HL NKLQ  L P    QL    +       I      R  ++ 
Sbjct: 461 GIQGARHAQFGISLSDLHL-NKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISC 520

Query: 121 LNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICC----------------------S 180
           L    +    ++SD  K   Q +LFG+PILTEQQI                         
Sbjct: 521 LLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNK 580

Query: 181 SSSDIHQVSPNKSDT------------------ELGLDIGHCKVFMESEDVGRTLNLSVI 240
           S+SD+     N++ T                  ++GL+ GHCKVFM+SEDVGRTL+LSV+
Sbjct: 581 SNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVV 640

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 255
           GSYEELYRRLA+MFG+EK +++SHV Y+DA GA+K  GD+PFS+F KTARRL ILTD SG
Sbjct: 641 GSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSG 697

[Close]

BLAST of Carg03234 vs. Swiss-Prot
Match: sp|Q9SKN5|ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana OX=3702 GN=ARF10 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-52
Identity = 144/318 (45.28%), Postives = 189/318 (59.43%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPL-DSQFPLSSSSSSFSSNTLRPSSPMCCLS---DN 60
           MP I LSPF SPRKK R+P   + P   ++FP+   S  F++N       MC LS   +N
Sbjct: 386 MPTIHLSPF-SPRKKIRIPQPFEFPFHGTKFPI--FSPGFANN--GGGESMCYLSNDNNN 445

Query: 61  TSVGIQGARHTH--FG---------ISLSDFHLNNKLQL-GLVPSSFQQLHFHSRI---S 120
              GIQGAR     FG         ++LS +  NNKL    +  SSF   H H +     
Sbjct: 446 APAGIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSE 505

Query: 121 NTDHTRSSLALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSPN 180
           N+++   SL + N      K +   SV K HQFVLFGQPILTEQQ+  +    + + +  
Sbjct: 506 NSNNISCSLTMGNPAMVQDKKKSVGSV-KTHQFVLFGQPILTEQQV-MNRKRFLEEEAEA 565

Query: 181 KSDTEL------------GLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGM- 240
           + +  L            GL+ GHCKVFMESEDVGRTL+LSVIGSY+ELYR+LA MF + 
Sbjct: 566 EEEKGLVARGLTWNYSLQGLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIE 625

Query: 241 EKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNKMGRRTLMDGVLSG 287
           E+ D+L+HV+Y+DA G +K+ GD+PFSDF+K  +RLTI  D  G N   R+T + G+ +G
Sbjct: 626 ERSDLLTHVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNV--RKTWITGIRTG 685

[Close]

BLAST of Carg03234 vs. Swiss-Prot
Match: sp|Q9AV47|ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF22 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.3e-52
Identity = 131/293 (44.71%), Postives = 168/293 (57.34%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPS-SPMCCLSDNTSV 60
           +P I L PFSSPRKK R+P HPD P +        +  F  N L PS SP+CC  D    
Sbjct: 397 IPPIHLGPFSSPRKKLRVPPHPDFPFEGHL----LNPIFHGNPLGPSNSPLCCYPDTAPA 456

Query: 61  GIQGARHTHFGISLSDFHLNNKLQLGLVPS-SFQQLHF---HSRIS-----NTDHTRSSL 120
           GIQGARH  FG+ L+D H  NKL LGL+ S SF +L      SRIS     ++     ++
Sbjct: 457 GIQGARHAQFGLPLTD-HQLNKLHLGLLHSGSFNRLDAITPPSRISKGFVVSSAPAHDNI 516

Query: 121 ALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQVSP---------- 180
           + L    T    E+SD  K     +LFG+ I TEQQI  S S++   +SP          
Sbjct: 517 SCLLSISTPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSSGSTE--TLSPGVTGNSSPNG 576

Query: 181 ------NKSD-----------------TELGLDIGHCKVFMESEDVGRTLNLSVIGSYEE 240
                 N SD                 ++LGL+ GHCKVFMESEDVGRT++LSV GSYEE
Sbjct: 577 NAHKTGNASDGSGSSICIGFSSQGHEASDLGLEAGHCKVFMESEDVGRTIDLSVFGSYEE 636

Query: 241 LYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDE 251
           LY RLA+MFG+EK +I++H+ ++DA G VK  G+ PFSDF+K ARRLTI+  +
Sbjct: 637 LYGRLADMFGIEKEEIINHLHFRDAAGVVKHPGEVPFSDFMKAARRLTIIAGD 682

[Close]

BLAST of Carg03234 vs. Swiss-Prot
Match: sp|Q93YR9|ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana OX=3702 GN=ARF16 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.5e-41
Identity = 115/284 (40.49%), Postives = 153/284 (53.87%), Query Frame = 0


Query: 4   IQLSPFSSPRKKFRLPHHPDV-PLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQ 63
           I L+ FS PRKK RLP HPD   L +  P+     SF SN L  SSP+  + DN  VG+Q
Sbjct: 391 IPLTSFSPPRKKMRLPQHPDYNNLINSIPV----PSFPSNPLIRSSPLSSVLDNVPVGLQ 450

Query: 64  GARHT---HFGISLSDFHLNNKLQLGLVPSSFQ-QLHFHSRISNTDHTRSSLALLNGEKT 123
           GARH    ++G+S                     QL     + N D             T
Sbjct: 451 GARHNAHQYYGLSXXXXXXXXXXXXXXXXXXXXLQLSPSLGLRNIDTKNEKGFCFLTMGT 510

Query: 124 GPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIHQV-------------------- 183
            P    +D+  KK   VLFG+ IL E+Q+    S+D   +                    
Sbjct: 511 TP---CNDTKSKKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREF 570

Query: 184 ------SP--NKSDTELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEK 243
                 SP   K     GL+ GHCKVFMES+DVGRTL+LSV+GSYEEL R+L++MFG++K
Sbjct: 571 SSSDEGSPCSKKVHDASGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKK 630

Query: 244 PDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSN 255
            ++LS VLY+DA+GA+K AG++PFS+F+KTARRLTILT++   +
Sbjct: 631 SEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTEQGSES 667

[Close]

BLAST of Carg03234 vs. Swiss-Prot
Match: sp|Q6K223|ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF8 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 115/306 (37.58%), Postives = 151/306 (49.35%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQ-----FPLSSSSSSFSSNTLRPSSPMCCLSD 60
           MP I LS FS PRKK R+  +P+ P + Q     FP +  +                   
Sbjct: 380 MPAINLSSFSPPRKKPRILAYPEFPFEGQLLNPAFPPNPLAHXXXXXXXXXXXFFPFPDV 439

Query: 61  NTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHF------HSRISNTDHTRSS 120
           +   GIQGARH  FG SLSD HL +     + P   +  H         RIS TD T  S
Sbjct: 440 SAPAGIQGARHAQFGPSLSDLHLTHLQSSLMYPGLRRPDHVGPTSIPPPRIS-TDLTMGS 499

Query: 121 LALLNGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCS------------------- 180
                    G K  + D  K     +LFGQ ILTE+Q+  S                   
Sbjct: 500 SPPARALSMGAK--KPDDAKPP-GLMLFGQRILTERQMSLSGTTSPAATGNSSLNWNTEK 559

Query: 181 -----SSSDIHQVSP--------------NKSDTELGLDIGHCKVFMESEDVGRTLNLSV 240
                S S + Q SP              N + +ELGL+ G CKVF+ES+ VGR L+LS 
Sbjct: 560 GASEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSS 619

Query: 241 IGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDES 258
           + S+E+LY RL+ MF ++  ++ S VLY+ ATG V+ AGD+PFS+FIK ARRLTILTD +
Sbjct: 620 LASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTD-A 679

[Close]

BLAST of Carg03234 vs. TrEMBL
Match: tr|A0A1S3CLX8|A0A1S3CLX8_CUCME (Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103501953 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 9.2e-126
Identity = 258/334 (77.25%), Postives = 266/334 (79.64%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFS PRKKFRLP HPD PLDSQFPL   SSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 390 MPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPL---SSSFSSNTLRPSSPMCCLSDNTSVG 449

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISN---TDH----TRSSLALL 120
           IQGARHT FGISLSDFHLNNKLQLGLVPSSFQQ+ FHSRISN   TDH    + +S  LL
Sbjct: 450 IQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLL 509

Query: 121 NGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDIH----------------- 180
           NGEKTGPKLERSDSV KKHQF+LFGQPILTEQQI CSSSSDIH                 
Sbjct: 510 NGEKTGPKLERSDSV-KKHQFLLFGQPILTEQQITCSSSSDIHSPRTEKSSSDVNVERVK 569

Query: 181 ------------QVSPNKSD------------TELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       Q+SPNKS             TELGLDIGHCKVFMESEDVGRTLNLSVI
Sbjct: 570 FHSDGSGSAFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVI 629

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
            SYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD SG
Sbjct: 630 SSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD-SG 689

[Close]

BLAST of Carg03234 vs. TrEMBL
Match: tr|S5G1J2|S5G1J2_CUCSA (Auxin response factor OS=Cucumis sativus OX=3659 GN=ARF10a PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 3.0e-124
Identity = 257/334 (76.95%), Postives = 264/334 (79.04%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVIQLSPFS PRKKFRLP HPD PLDSQFPL   SSSFSSNTLRPSSPMCCLSDNTSVG
Sbjct: 390 MPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPL---SSSFSSNTLRPSSPMCCLSDNTSVG 449

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISN---TDH----TRSSLALL 120
           IQGARHT FGISLSDFHLNNKLQLGLVPSSFQQ+ FHSRISN   TDH    + +S  L 
Sbjct: 450 IQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLQ 509

Query: 121 NGEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDI------------------ 180
           NGEKTGPKLERSDSV KKHQF+LFGQPILTEQQI CSSSSDI                  
Sbjct: 510 NGEKTGPKLERSDSV-KKHQFLLFGQPILTEQQITCSSSSDIRSPPTEKSSSDVNLERVK 569

Query: 181 -----------HQVSPNKSD------------TELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       QVSPNKS             TELGLDIGHCKVFMESEDVGRTLNLSVI
Sbjct: 570 FLSHGSGSTFKQQVSPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVI 629

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
            SYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD SG
Sbjct: 630 SSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTD-SG 689

[Close]

BLAST of Carg03234 vs. TrEMBL
Match: tr|A0A2N9HWN2|A0A2N9HWN2_FAGSY (Auxin response factor OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43991 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.4e-88
Identity = 196/334 (58.68%), Postives = 218/334 (65.27%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MPVI +SPFS PRKK RLP HPD P D QFPL     SF  NTL PSSP+CCLSDNT  G
Sbjct: 389 MPVIHISPFSPPRKKLRLPQHPDFPHDGQFPL----PSFLGNTLGPSSPLCCLSDNTPAG 448

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRI------SNTDHTRSSLALLN 120
           IQGARH  FGISL D H NNKLQ GL PS+ QQ + H R        NT+   +   LL 
Sbjct: 449 IQGARHAQFGISLPDLHFNNKLQPGLFPSNSQQYNMHPRTCNGMMKGNTNSNENLSCLLT 508

Query: 121 GEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDI------------------- 180
              +   LE+SD+V K HQF+LFGQPILTEQQI  S SSD                    
Sbjct: 509 IGNSSQNLEKSDNV-KTHQFLLFGQPILTEQQISRSCSSDTVPQVLTGKSSSNGNQDKVK 568

Query: 181 -----------HQVSPNKS------------DTELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       QVSP KS            +TEL LD GHCKVFMESEDVGRTL+LSV+
Sbjct: 569 FLSDGSGSKLEQQVSPEKSSSTGFSWHQGFQNTELALDTGHCKVFMESEDVGRTLDLSVL 628

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
           GSYEELYRRLANMFG+E+ D+LS VLYQDATGAVKQ GD+PFSDF KTA+RLTILT  SG
Sbjct: 629 GSYEELYRRLANMFGIERSDMLSRVLYQDATGAVKQTGDEPFSDFKKTAKRLTILTGSSG 688

[Close]

BLAST of Carg03234 vs. TrEMBL
Match: tr|W9QJR0|W9QJR0_9ROSA (Auxin response factor OS=Morus notabilis OX=981085 GN=L484_008052 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.2e-85
Identity = 195/331 (58.91%), Postives = 219/331 (66.16%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MP+I LS FS PRKK RLP HPD  LD QF +     SF  N L PSSPMC L DNT  G
Sbjct: 368 MPIIPLSSFSPPRKKLRLPQHPDFTLDGQFLV----PSFLGNPLGPSSPMCYLPDNTPAG 427

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRIS------NTDHTRSSLALLN 120
           IQGARH  FGISLSD HLNNKLQ GL  SSFQQL+ HSRIS      N +   S  +LL 
Sbjct: 428 IQGARHALFGISLSDLHLNNKLQSGLFHSSFQQLNQHSRISNEIITGNANRNESLSSLLT 487

Query: 121 GEKTGPKLERSDSVK-KKHQFVLFGQPILTEQQICCSSSSD-IHQVSPNKS--------- 180
              +   LE+SDSVK K+HQFVLFGQPILTEQQI  + SSD + +VS  KS         
Sbjct: 488 MGNSTQNLEKSDSVKLKRHQFVLFGQPILTEQQISNNGSSDTVSEVSNGKSLTDGNPEGA 547

Query: 181 ----------------------------DTELGLDIGHCKVFMESEDVGRTLNLSVIGSY 240
                                        TE GLD GHCKVFMESEDVGR L+LSV+GSY
Sbjct: 548 KFHSNGSGSLPEQQASSNTGISWLKGLQATEFGLDTGHCKVFMESEDVGRVLDLSVLGSY 607

Query: 241 EELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSNK 287
           EELYRRLANMFG+E+ ++LSHVLY DATGAVK+ GD+PFSDF+KTA+RLTILTD SGS  
Sbjct: 608 EELYRRLANMFGIERSEMLSHVLYHDATGAVKRTGDEPFSDFMKTAKRLTILTD-SGSKN 667

[Close]

BLAST of Carg03234 vs. TrEMBL
Match: tr|A0A2P5FTY2|A0A2P5FTY2_9ROSA (Auxin response factor OS=Trema orientalis OX=63057 GN=TorARF11 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.0e-84
Identity = 191/334 (57.19%), Postives = 217/334 (64.97%), Query Frame = 0


Query: 1   MPVIQLSPFSSPRKKFRLPHHPDVPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVG 60
           MP+I LS FS PRKK R P HPD  LDSQFP+    SSF  N L PSSP+CCL DNT  G
Sbjct: 383 MPIIHLSSFSPPRKKLRFPQHPDFTLDSQFPV----SSFLGNPLGPSSPLCCLPDNTPAG 442

Query: 61  IQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISN------TDHTRSSLALLN 120
           IQGARH  FGISLSD HLNNKLQ GL  SSF+QL+ HS I N      ++   S   LL 
Sbjct: 443 IQGARHALFGISLSDLHLNNKLQPGLFSSSFEQLNPHSGIPNGLKRGHSNSNESLSCLLT 502

Query: 121 GEKTGPKLERSDSVKKKHQFVLFGQPILTEQQICCSSSSDI------------------- 180
              + P +E+ DSV K HQFVLFGQ ILTEQQI  S SSD                    
Sbjct: 503 MGNSSPNMEKFDSV-KGHQFVLFGQRILTEQQISRSCSSDSVSQVSNGKNSADGNPDKAK 562

Query: 181 -----------HQVSPNKSD------------TELGLDIGHCKVFMESEDVGRTLNLSVI 240
                       QVSP KS              E GLD GHCKVFM+SEDVGRTL+LSV+
Sbjct: 563 FLSNGSGSTLEQQVSPEKSSNTGFSWHQGLKANEFGLDTGHCKVFMDSEDVGRTLDLSVL 622

Query: 241 GSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESG 287
           GSYEELY RLANMFG+E+ ++L+HVLY DA+GA+KQ GD+PFSDF+KTA+RLTILTD SG
Sbjct: 623 GSYEELYGRLANMFGIERSEMLTHVLYHDASGALKQTGDEPFSDFMKTAKRLTILTD-SG 682

The following BLAST results are available for this feature:

BLAST of Carg03234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512450.1	1.2e-156	98.60	auxin response factor 10 [Cucurbita pepo subsp. pepo]	[more]
XP_022943597.1	4.4e-156	98.25	auxin response factor 10 [Cucurbita moschata]	[more]
XP_022985548.1	9.2e-154	97.20	auxin response factor 18 [Cucurbita maxima]	[more]
XP_008463952.1	1.4e-125	77.25	PREDICTED: auxin response factor 18 [Cucumis melo]	[more]
NP_001275525.1	4.5e-124	76.95	auxin response factor 18-like [Cucumis sativus] >XP_011656307.1 PREDICTED: auxin...	[more]

BLAST of Carg03234 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28350.1	1.3e-53	45.28	auxin response factor 10	[more]
AT4G30080.1	3.1e-42	40.49	auxin response factor 16	[more]
AT1G59750.1	2.7e-06	28.81	auxin response factor 1	[more]
AT1G15050.1	4.6e-06	34.94	indole-3-acetic acid inducible 34	[more]
AT2G46530.3	6.0e-06	31.87	auxin response factor 11	[more]

BLAST of Carg03234 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q653H7\|ARFR_ORYSJ	4.5e-59	45.70	Auxin response factor 18 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF18 PE=2 ...	[more]
sp\|Q9SKN5\|ARFJ_ARATH	2.4e-52	45.28	Auxin response factor 10 OS=Arabidopsis thaliana OX=3702 GN=ARF10 PE=2 SV=1	[more]
sp\|Q9AV47\|ARFV_ORYSJ	5.3e-52	44.71	Auxin response factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF22 PE=2 ...	[more]
sp\|Q93YR9\|ARFP_ARATH	5.5e-41	40.49	Auxin response factor 16 OS=Arabidopsis thaliana OX=3702 GN=ARF16 PE=1 SV=1	[more]
sp\|Q6K223\|ARFH_ORYSJ	1.3e-34	37.58	Auxin response factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF8 PE=2 SV...	[more]

BLAST of Carg03234 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLX8\|A0A1S3CLX8_CUCME	9.2e-126	77.25	Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103501953 PE=3 SV=1	[more]
tr\|S5G1J2\|S5G1J2_CUCSA	3.0e-124	76.95	Auxin response factor OS=Cucumis sativus OX=3659 GN=ARF10a PE=2 SV=1	[more]
tr\|A0A2N9HWN2\|A0A2N9HWN2_FAGSY	3.4e-88	58.68	Auxin response factor OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43991 PE=3 SV=1	[more]
tr\|W9QJR0\|W9QJR0_9ROSA	1.2e-85	58.91	Auxin response factor OS=Morus notabilis OX=981085 GN=L484_008052 PE=3 SV=1	[more]
tr\|A0A2P5FTY2\|A0A2P5FTY2_9ROSA	3.0e-84	57.19	Auxin response factor OS=Trema orientalis OX=63057 GN=TorARF11 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03234-RA	Carg03234-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 172..256 e-value: 1.1E-12 score: 49.8
None	No IPR available	PANTHER	PTHR31384	FAMILY NOT NAMED	coord: 163..257
None	No IPR available	PANTHER	PTHR31384:SF27	AUXIN RESPONSE FACTOR 10	coord: 1..163
None	No IPR available	PANTHER	PTHR31384:SF27	AUXIN RESPONSE FACTOR 10	coord: 163..257
None	No IPR available	PANTHER	PTHR31384	FAMILY NOT NAMED	coord: 1..163
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 171..251 score: 19.207

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03234	Cla008736	Watermelon (97103) v1	carwmB0330
Carg03234	Csa6G141390	Cucumber (Chinese Long) v2	carcuB0371
Carg03234	MELO3C025777	Melon (DHL92) v3.5.1	carmeB0340
Carg03234	ClCG02G021210	Watermelon (Charleston Gray)	carwcgB0327
Carg03234	CSPI06G11520	Wild cucumber (PI 183967)	carcpiB0374
Carg03234	Cucsa.386060	Cucumber (Gy14) v1	carcgyB0403
Carg03234	CmaCh02G008970	Cucurbita maxima (Rimu)	carcmaB0477
Carg03234	CmaCh20G004890	Cucurbita maxima (Rimu)	carcmaB0473
Carg03234	CmoCh02G009000	Cucurbita moschata (Rifu)	carcmoB0467
Carg03234	CmoCh20G005250	Cucurbita moschata (Rifu)	carcmoB0464
Carg03234	Lsi10G012620	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03234	Cp4.1LG16g05330	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03234	Cp4.1LG05g08160	Cucurbita pepo (Zucchini)	carcpeB0477
Carg03234	CsGy6G011680	Cucumber (Gy14) v2	carcgybB0351
Carg03234	MELO3C025777.2	Melon (DHL92) v3.6.1	carmedB0346
Carg03234	CsaV3_6G013960	Cucumber (Chinese Long) v3	carcucB0375
Carg03234	Cla97C02G047260	Watermelon (97103) v2	carwmbB0346
Carg03234	Bhi10G000440	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03234	Carg08580	Silver-seed gourd	carcarB361

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03234	Silver-seed gourd	carcarB187
Carg03234	Silver-seed gourd	carcarB287
Carg03234	Cucumber (Gy14) v2	carcgybB0342
Carg03234	Cucumber (Gy14) v2	carcgybB0344
Carg03234	Cucumber (Gy14) v1	carcgyB0400
Carg03234	Cucurbita maxima (Rimu)	carcmaB0467
Carg03234	Cucurbita maxima (Rimu)	carcmaB0482
Carg03234	Cucurbita moschata (Rifu)	carcmoB0458
Carg03234	Cucurbita moschata (Rifu)	carcmoB0460
Carg03234	Cucurbita moschata (Rifu)	carcmoB0469
Carg03234	Cucurbita pepo (Zucchini)	carcpeB0469
Carg03234	Cucurbita pepo (Zucchini)	carcpeB0470
Carg03234	Wild cucumber (PI 183967)	carcpiB0366
Carg03234	Cucumber (Chinese Long) v2	carcuB0360
Carg03234	Cucumber (Chinese Long) v2	carcuB0363
Carg03234	Cucumber (Chinese Long) v3	carcucB0363
Carg03234	Cucumber (Chinese Long) v3	carcucB0367
Carg03234	Bottle gourd (USVL1VR-Ls)	carlsiB310
Carg03234	Melon (DHL92) v3.5.1	carmeB0347
Carg03234	Melon (DHL92) v3.6.1	carmedB0352
Carg03234	Watermelon (Charleston Gray)	carwcgB0324
Carg03234	Watermelon (97103) v1	carwmB0322
Carg03234	Watermelon (97103) v2	carwmbB0340
Carg03234	Watermelon (97103) v2	carwmbB0353
Carg03234	Wax gourd	carwgoB0415
Carg03234	Wax gourd	carwgoB0423
Carg03234	Wax gourd	carwgoB0427