Carg03220 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03220
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SNF1-related protein kinase regulatory subunit beta
Location	Cucurbita_argyrosperma_scaffold_005 : 670934 .. 671451 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCTGTGTTCTTTTCAGGTTTCCAGTTTTTTAATTTTCCACAATTGATGAGTTTTTGCTGTTAGATTGAAGCTTTCACTTCAACATGAACCCTTACTCTGAAGATAGTGTAAGCTGCTAAAGTTCTACACCTTGGTGTTTTCATCAACCAATAATATGAAATGGGGATTTAAAGATGTATCCTTTCTACAGGATCGGACCACCGTAGTTGGTTTCGAAGTCCCGAAGTCCCCCGATTCAACCTATAACAATGAATACCGTGGGACCGAAGACGAGGCACGTGATCCACCATTTGTCCCACCTCATTTGCAGCACACCTTACTCAGCCACCCAGCAAGTAGAGATACCAGTGGAACTCTTCCATTGCCTCAGAATGTAATTCTCAACCATCTTTTTATCGAAAACCGAGACACCCCACGTTCCGTTGTAGCTCTTGGATTCACACACCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCAGTTCACAGAACAGGAACTAGCCGAGCT

mRNA sequence

AAAACCTGTGTTCTTTTCAGGTTTCCAGTTTTTTAATTTTCCACAATTGATGAGTTTTTGCTGTTAGATTGAAGCTTTCACTTCAACATGAACCCTTACTCTGAAGATAGTGATCGGACCACCGTAGTTGGTTTCGAAGTCCCGAAGTCCCCCGATTCAACCTATAACAATGAATACCGTGGGACCGAAGACGAGGCACGTGATCCACCATTTGTCCCACCTCATTTGCAGCACACCTTACTCAGCCACCCAGCAAGTAGAGATACCAGTGGAACTCTTCCATTGCCTCAGAATGTAATTCTCAACCATCTTTTTATCGAAAACCGAGACACCCCACGTTCCGTTGTAGCTCTTGGATTCACACACCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCAGTTCACAGAACAGGAACTAGCCGAGCT

Coding sequence (CDS)

ATGAACCCTTACTCTGAAGATAGTGATCGGACCACCGTAGTTGGTTTCGAAGTCCCGAAGTCCCCCGATTCAACCTATAACAATGAATACCGTGGGACCGAAGACGAGGCACGTGATCCACCATTTGTCCCACCTCATTTGCAGCACACCTTACTCAGCCACCCAGCAAGTAGAGATACCAGTGGAACTCTTCCATTGCCTCAGAATGTAATTCTCAACCATCTTTTTATCGAAAACCGAGACACCCCACGTTCCGTTGTAGCTCTTGGATTCACACACCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCAGTTCACAGAACAGGAACTAGCCGAGCT

Protein sequence

MNPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTSGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA

Homology

[Close]

BLAST of Carg03220 vs. NCBI nr
Match: XP_022944084.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata])

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDT 60
           MNPYSEDSDRTTVVGFEVPKSPDSTYNNEY GTEDEA DPPFVPPHLQHTLLSHPASRDT
Sbjct: 1   MNPYSEDSDRTTVVGFEVPKSPDSTYNNEYHGTEDEAHDPPFVPPHLQHTLLSHPASRDT 60

Query: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
           SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA
Sbjct: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 116

[Close]

BLAST of Carg03220 vs. NCBI nr
Match: XP_023512097.1 (SNF1-related protein kinase regulatory subunit beta-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 7.0e-60
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDT 60
           MNPYS DSD+TTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDT
Sbjct: 1   MNPYSGDSDQTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDT 60

Query: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
           SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA
Sbjct: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 116

[Close]

BLAST of Carg03220 vs. NCBI nr
Match: XP_022986207.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 4.6e-59
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDT 60
           MNPYSEDSD+TTVVGFEVPKSPDSTYNNEY  TEDEARDPPFVPPHLQHTLLSHPASRDT
Sbjct: 1   MNPYSEDSDQTTVVGFEVPKSPDSTYNNEYHVTEDEARDPPFVPPHLQHTLLSHPASRDT 60

Query: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
           SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA
Sbjct: 61  SGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 116

[Close]

BLAST of Carg03220 vs. NCBI nr
Match: XP_022140750.1 (SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_022140751.1 SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 9.2e-52
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           NPYSEDSD+TTVVGFEVP SPDSTYNN Y G+EDEARDPPF PPHLQHTLLSHPASRD  
Sbjct: 3   NPYSEDSDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAG 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
           GTLPLP NVILNHL+IENR+TPRSVVALGFTHRF SK+VTVVLYKPVHR G+SRA
Sbjct: 63  GTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Carg03220 vs. NCBI nr
Match: XP_022958406.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958407.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958408.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 1.6e-51
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           NP+ EDSD+TTVVGFEVPKSPDSTYNN Y G+ED+ARDPP VPPHLQHTLLSHPASRD  
Sbjct: 3   NPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRDAG 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTS 115
           GTLPLPQNV+LNHLFIENR+TPRSVVALGFTHRFHSKYVTVVLYKPVHR G+S
Sbjct: 63  GTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of Carg03220 vs. TAIR10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 147.9 bits (372), Expect = 3.9e-36
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 6   EDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTSGTLP 65
           +D + TTVVGFEVP SP S+YNN Y  TEDE RDPP VPPHLQH+LL +  S + +    
Sbjct: 7   DDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSMELAYA-- 66

Query: 66  LPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTS 115
            PQNV+LNHL+IENRD PRSVVALGF+HRF +K+VTVV+YKPV R G++
Sbjct: 67  -PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of Carg03220 vs. TAIR10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-25
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 9   DRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASR-DTSGTLPLP 68
           D  ++ GFE P+SP+++Y+N   G ED +++PP VPPHLQ TLL+ PA+  D    LP P
Sbjct: 159 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 218

Query: 69  QNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHR 111
           Q+VILNHL+++   +  SVVALG THRF +KYVTVVLYK + R
Sbjct: 219 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]

BLAST of Carg03220 vs. TAIR10
Match: AT5G21170.2 (5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 12  TVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTSGTLPLPQNVI 71
           ++V FE P SPD +Y       ED A++P  VPP L  TLL    + + +     PQ+V+
Sbjct: 225 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVV 284

Query: 72  LNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHR 111
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 285 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320

[Close]

BLAST of Carg03220 vs. Swiss-Prot
Match: sp|Q9ZUU8|KINB3_ARATH (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-35
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 6   EDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTSGTLP 65
           +D + TTVVGFEVP SP S+YNN Y  TEDE RDPP VPPHLQH+LL +  S + +    
Sbjct: 7   DDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSMELAYA-- 66

Query: 66  LPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTS 115
            PQNV+LNHL+IENRD PRSVVALGF+HRF +K+VTVV+YKPV R G++
Sbjct: 67  -PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of Carg03220 vs. Swiss-Prot
Match: sp|Q9SCY5|KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-24
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 9   DRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASR-DTSGTLPLP 68
           D  ++ GFE P+SP+++Y+N   G ED +++PP VPPHLQ TLL+ PA+  D    LP P
Sbjct: 187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 246

Query: 69  QNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHR 111
           Q+VILNHL+++   +  SVVALG THRF +KYVTVVLYK + R
Sbjct: 247 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]

BLAST of Carg03220 vs. Swiss-Prot
Match: sp|Q84VQ1|KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-20
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 12  TVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTSGTLPLPQNVI 71
           ++V FE P SPD +Y       ED A++P  VPP L  TLL    + + +     PQ+V+
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVV 247

Query: 72  LNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHR 111
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 248 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]

BLAST of Carg03220 vs. Swiss-Prot
Match: sp|Q9QZH4|AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-09
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 17  EVPKSPDSTYNNEYR--GTEDEARDPPFVPPHLQHTLLSHPASRDTS-GTLPLPQNVILN 76
           ++  SP   Y  E     +E+  + PP +PPHL   +L+   +       LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 77  HLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPV 109
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of Carg03220 vs. Swiss-Prot
Match: sp|O43741|AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 17  EVPKSPDSTYNNEYRG--TEDEARDPPFVPPHLQHTLLSHPASRDTS-GTLPLPQNVILN 76
           ++  SP   Y  E     +E+  + PP +PPHL   +L+   +       LP P +V+LN
Sbjct: 180 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 239

Query: 77  HLF-IENRDTPRSVVALGFTHRFHSKYVTVVLYKPV 109
           HL+ +  +D   SV+ L  THR+  KYVT +LYKP+
Sbjct: 240 HLYALSIKD---SVMVLSATHRYKKKYVTTLLYKPI 272

[Close]

BLAST of Carg03220 vs. TrEMBL
Match: tr|A0A1S3CP39|A0A1S3CP39_CUCME (SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN=LOC103502997 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           N YSEDSD+TTVVGFEVPKSPDSTYNN Y G+EDEARDPP VPPHLQHTLLS PASRD  
Sbjct: 3   NLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRDAG 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
            TLPLPQNVILNHLFIENR+TPRSVVALGFTHRFHSKYVTVVLYKPVHR G+SRA
Sbjct: 63  ETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Carg03220 vs. TrEMBL
Match: tr|A0A0A0KBG3|A0A0A0KBG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           N YSEDSD+TTVVGFEVPKSPDSTYNN Y G+EDEARDPP VPPHLQHTLLS PASRD  
Sbjct: 3   NLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRDAG 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
            TLPLPQNVILNHLFIENR+TPRSVVALGFTHRFHSKYVTVVLYKPVHR G+SRA
Sbjct: 63  ETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Carg03220 vs. TrEMBL
Match: tr|D7SNE5|D7SNE5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00300 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.9e-45
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           NPY ED D TTVVGFEVPKSPDS+YNN Y G EDEA+DPP VPPHL H LLSHP+SRDTS
Sbjct: 3   NPYGEDQDDTTVVGFEVPKSPDSSYNNVYPGHEDEAKDPPPVPPHLLHPLLSHPSSRDTS 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTS 115
           GTLP+PQNVILNHL+IENR+TPRSVVALG THRF SK+VTVVLYKPV R+ ++
Sbjct: 63  GTLPVPQNVILNHLYIENRETPRSVVALGITHRFRSKFVTVVLYKPVQRSAST 115

[Close]

BLAST of Carg03220 vs. TrEMBL
Match: tr|V4SB90|V4SB90_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029607mg PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.2e-45
Identity = 93/117 (79.49%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MNPY-SEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRD 60
           MN Y  E+ D+ TVVGFEVPKSPDS+YNN Y G EDEARDPP VPPHLQHTLLS+PASRD
Sbjct: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60

Query: 61  TSGTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTSRA 117
            SG LP PQNVILNHL+IENRD PRSVVALGFTHRF SKYVTVVLYKPV R G++ A
Sbjct: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTSA 117

[Close]

BLAST of Carg03220 vs. TrEMBL
Match: tr|K7LQC9|K7LQC9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100785077 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.2e-45
Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 2   NPYSEDSDRTTVVGFEVPKSPDSTYNNEYRGTEDEARDPPFVPPHLQHTLLSHPASRDTS 61
           N +SE+ D  TV GFEVPKSPDS+YNN Y G EDEARDPP VP HLQHTLL++PA+RDT+
Sbjct: 3   NSHSENHDEVTVAGFEVPKSPDSSYNNVYPGNEDEARDPPMVPSHLQHTLLNYPANRDTA 62

Query: 62  GTLPLPQNVILNHLFIENRDTPRSVVALGFTHRFHSKYVTVVLYKPVHRTGTS 115
           GT+PLPQNVILNHL+IENR++PRSVVALGFTHRFHSKYVTVVLYKPV R G +
Sbjct: 63  GTVPLPQNVILNHLYIENRESPRSVVALGFTHRFHSKYVTVVLYKPVQRRGNT 115

The following BLAST results are available for this feature:

BLAST of Carg03220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944084.1	5.4e-60	98.28	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata]	[more]
XP_023512097.1	7.0e-60	98.28	SNF1-related protein kinase regulatory subunit beta-3 [Cucurbita pepo subsp. pep...	[more]
XP_022986207.1	4.6e-59	97.41	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima]	[more]
XP_022140750.1	9.2e-52	86.96	SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_...	[more]
XP_022958406.1	1.6e-51	87.61	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] ...	[more]

BLAST of Carg03220 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28060.1	3.9e-36	65.14	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.3	5.2e-25	54.37	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.2	2.1e-21	50.51	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

BLAST of Carg03220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUU8\|KINB3_ARATH	7.0e-35	65.14	SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SCY5\|KINB2_ARATH	9.4e-24	54.37	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
sp\|Q84VQ1\|KINB1_ARATH	3.7e-20	50.51	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9QZH4\|AAKB2_RAT	5.0e-09	36.84	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=...	[more]
sp\|O43741\|AAKB2_HUMAN	1.1e-08	36.46	5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2...	[more]

BLAST of Carg03220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CP39\|A0A1S3CP39_CUCME	1.8e-51	88.70	SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KBG3\|A0A0A0KBG3_CUCSA	1.8e-51	88.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=4 SV=1	[more]
tr\|D7SNE5\|D7SNE5_VITVI	1.9e-45	79.65	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00300 PE=4 SV=...	[more]
tr\|V4SB90\|V4SB90_9ROSI	3.2e-45	79.49	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029607mg PE=4 ...	[more]
tr\|K7LQC9\|K7LQC9_SOYBN	4.2e-45	77.88	Uncharacterized protein OS=Glycine max OX=3847 GN=100785077 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0043562	cellular response to nitrogen levels
GO:0009744	response to sucrose

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR037256	ASC_dom_sf
IPR030067	KINB3
IPR006828	ASC_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043562	cellular response to nitrogen levels
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03220-RA	Carg03220-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006828	Association with the SNF1 complex (ASC) domain	SMART	SM01010	AMPKBI_2	coord: 19..108 e-value: 9.5E-31 score: 118.1
IPR006828	Association with the SNF1 complex (ASC) domain	PFAM	PF04739	AMPKBI	coord: 37..107 e-value: 1.5E-21 score: 76.3
None	No IPR available	GENE3D	G3DSA:3.30.160.760		coord: 23..108 e-value: 9.1E-24 score: 85.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
IPR030067	SNF1-related protein kinase regulatory subunit beta-3	PANTHER	PTHR45503	FAMILY NOT NAMED	coord: 2..114
IPR037256	ASC domain superfamily	SUPERFAMILY	SSF160219	AMPKBI-like	coord: 11..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03220	Cla008717	Watermelon (97103) v1	carwmB0330
Carg03220	Csa6G147560	Cucumber (Chinese Long) v2	carcuB0371
Carg03220	MELO3C026917	Melon (DHL92) v3.5.1	carmeB0336
Carg03220	ClCG02G021380	Watermelon (Charleston Gray)	carwcgB0327
Carg03220	CSPI06G11740	Wild cucumber (PI 183967)	carcpiB0374
Carg03220	Cucsa.385880	Cucumber (Gy14) v1	carcgyB0403
Carg03220	CmaCh02G013910	Cucurbita maxima (Rimu)	carcmaB0474
Carg03220	CmaCh20G005070	Cucurbita maxima (Rimu)	carcmaB0473
Carg03220	CmoCh02G014270	Cucurbita moschata (Rifu)	carcmoB0465
Carg03220	CmoCh20G005390	Cucurbita moschata (Rifu)	carcmoB0464
Carg03220	Lsi10G012430	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03220	Cp4.1LG16g05220	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03220	Cp4.1LG05g02850	Cucurbita pepo (Zucchini)	carcpeB0480
Carg03220	CsGy6G011850	Cucumber (Gy14) v2	carcgybB0351
Carg03220	MELO3C026917.2	Melon (DHL92) v3.6.1	carmedB0346
Carg03220	CsaV3_6G014170	Cucumber (Chinese Long) v3	carcucB0375
Carg03220	Cla97C02G047480	Watermelon (97103) v2	carwmbB0346
Carg03220	Bhi10G000126	Wax gourd	carwgoB0421

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03220	Carg02576	Silver-seed gourd	carcarB366

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03220	Cucumber (Chinese Long) v3	carcucB0363
Carg03220	Bottle gourd (USVL1VR-Ls)	carlsiB310
Carg03220	Melon (DHL92) v3.5.1	carmeB0340
Carg03220	Watermelon (97103) v2	carwmbB0340
Carg03220	Watermelon (97103) v2	carwmbB0353
Carg03220	Wax gourd	carwgoB0415
Carg03220	Wax gourd	carwgoB0423
Carg03220	Wax gourd	carwgoB0427
Carg03220	Silver-seed gourd	carcarB187
Carg03220	Silver-seed gourd	carcarB287
Carg03220	Cucumber (Gy14) v2	carcgybB0342
Carg03220	Cucurbita maxima (Rimu)	carcmaB0467
Carg03220	Cucurbita maxima (Rimu)	carcmaB0482
Carg03220	Cucurbita moschata (Rifu)	carcmoB0458
Carg03220	Cucurbita moschata (Rifu)	carcmoB0460
Carg03220	Cucurbita moschata (Rifu)	carcmoB0469
Carg03220	Cucurbita pepo (Zucchini)	carcpeB0470
Carg03220	Cucumber (Chinese Long) v2	carcuB0360