Carg03218 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03218
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_005 : 663716 .. 664069 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAGCTTGTGACCGTAGCCATGAAGAAGAATGGCATTGTCAAGCTCAAGTCCGCCGTTGGGAAGCTGCAGAGAAGCCTCTCCTTAGGTCGGAGGTCTGATTCTGGTCAAGATGACTTCGATTACGACTCGACTCCGGTACCGGAGGATGTCAAAGAAGGACATTTTGCAGTTGTGGCAGTTGATGCTGAGGAGCCGAAACGGTTTGCTGTTCCGTTGAGTTGCTTGACGAATCCGACGTTTTTGAGACTGTTGGAGGCGGCGGCTGAGGAGTATGGATTTGATCATGAAGGTGCAGTGACCGTGCCATGTCGGCCGAGCGAGCTCGAGCAGATCTTGGCCGAGGAATAG

mRNA sequence

ATGACTAAGCTTGTGACCGTAGCCATGAAGAAGAATGGCATTGTCAAGCTCAAGTCCGCCGTTGGGAAGCTGCAGAGAAGCCTCTCCTTAGGTCGGAGGTCTGATTCTGGTCAAGATGACTTCGATTACGACTCGACTCCGGTACCGGAGGATGTCAAAGAAGGACATTTTGCAGTTGTGGCAGTTGATGCTGAGGAGCCGAAACGGTTTGCTGTTCCGTTGAGTTGCTTGACGAATCCGACGTTTTTGAGACTGTTGGAGGCGGCGGCTGAGGAGTATGGATTTGATCATGAAGGTGCAGTGACCGTGCCATGTCGGCCGAGCGAGCTCGAGCAGATCTTGGCCGAGGAATAG

Coding sequence (CDS)

ATGACTAAGCTTGTGACCGTAGCCATGAAGAAGAATGGCATTGTCAAGCTCAAGTCCGCCGTTGGGAAGCTGCAGAGAAGCCTCTCCTTAGGTCGGAGGTCTGATTCTGGTCAAGATGACTTCGATTACGACTCGACTCCGGTACCGGAGGATGTCAAAGAAGGACATTTTGCAGTTGTGGCAGTTGATGCTGAGGAGCCGAAACGGTTTGCTGTTCCGTTGAGTTGCTTGACGAATCCGACGTTTTTGAGACTGTTGGAGGCGGCGGCTGAGGAGTATGGATTTGATCATGAAGGTGCAGTGACCGTGCCATGTCGGCCGAGCGAGCTCGAGCAGATCTTGGCCGAGGAATAG

Protein sequence

MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE

Homology

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BLAST of Carg03218 vs. NCBI nr
Match: XP_023512258.1 (auxin-responsive protein SAUR50 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVV 60
           MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVV
Sbjct: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVV 60

Query: 61  AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE
Sbjct: 61  AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 117

[Close]

BLAST of Carg03218 vs. NCBI nr
Match: XP_022986206.1 (auxin-responsive protein SAUR50 [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 8.1e-56
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVV 60
           MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQD+FDYDSTPVPEDVKEGHFAVV
Sbjct: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDEFDYDSTPVPEDVKEGHFAVV 60

Query: 61  AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGF+HEGAVTVPCRPSELE ILAEE
Sbjct: 61  AVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFNHEGAVTVPCRPSELEHILAEE 117

[Close]

BLAST of Carg03218 vs. NCBI nr
Match: XP_022944522.1 (auxin-responsive protein SAUR50 [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 9   MKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPK 68
           MKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPK
Sbjct: 1   MKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPK 60

Query: 69  RFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           RFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE
Sbjct: 61  RFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 109

[Close]

BLAST of Carg03218 vs. NCBI nr
Match: XP_004145816.1 (PREDICTED: uncharacterized protein LOC101212725 [Cucumis sativus] >KGN46866.1 hypothetical protein Csa_6G147590 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 106/123 (86.18%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDY------DSTPVPEDVKE 60
           M K VT+A KKNGIVKLK+AVGKLQRSLSLGRRSDSGQD+ DY       STPVPEDVKE
Sbjct: 1   MAKHVTIAKKKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDYAVGDDESSTPVPEDVKE 60

Query: 61  GHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQIL 118
           GHFAVVAVDAEEPKRF VPLSCLTNPTFLRLLEAAAEEYGFDHEGA+TVPCRPSELE+IL
Sbjct: 61  GHFAVVAVDAEEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSELERIL 120

[Close]

BLAST of Carg03218 vs. NCBI nr
Match: XP_008465358.1 (PREDICTED: auxin-responsive protein SAUR32-like [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 8.1e-48
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYD------STPVPEDVKE 60
           M KLVT+A KKNGIVKLK+AVGKLQRSLSLGRRSDSGQD+ D +      ST VPEDVKE
Sbjct: 1   MAKLVTIAKKKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDDEVGDDGSSTLVPEDVKE 60

Query: 61  GHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQIL 118
           GHFAVVAVDAEEPKRF VPLSCLTNPTFLRLLEAAAEEYGF+HEGA+TVPCRPSELE+IL
Sbjct: 61  GHFAVVAVDAEEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFEHEGALTVPCRPSELERIL 120

[Close]

BLAST of Carg03218 vs. TAIR10
Match: AT2G28085.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 10  KKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDA--EEP 69
           K  GIVKLK+ V +L +            +++  D   VP+DVKEGHFAV+AVD   E  
Sbjct: 15  KMGGIVKLKNVVERLVQIKGFSSAKKPCPEEYGRDC--VPKDVKEGHFAVIAVDGYHEPT 74

Query: 70  KRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           +RF VPL  L +P F +LLE A EEYGF H+GA+ VPCRPS L  IL E+
Sbjct: 75  QRFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQ 122

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BLAST of Carg03218 vs. TAIR10
Match: AT3G09870.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-16
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 48  VPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRP 107
           +P DVKEGH AV+AV  E  KRF + L  L  P FLRLLE A EE+GF   G +T+PC+P
Sbjct: 41  IPSDVKEGHVAVIAVKGERIKRFVLELEELNKPEFLRLLEQAREEFGFQPRGPLTIPCQP 100

Query: 108 SELEQIL 115
            E+++IL
Sbjct: 101 EEVQKIL 107

[Close]

BLAST of Carg03218 vs. TAIR10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 24  LQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFL 83
           L+R  SLG+++  G     YD   +P DV +GHF V     E   R+ VP+S LT+P F 
Sbjct: 20  LKRCSSLGKKNGGG-----YDEDCLPLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQ 79

Query: 84  RLLEAAAEEYGFDHEGAVTVPC 106
            LL+ A EE+GFDH+  +T+PC
Sbjct: 80  SLLQRAEEEFGFDHDMGLTIPC 94

[Close]

BLAST of Carg03218 vs. TAIR10
Match: AT1G19830.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 24  LQRSLSLGRRSDSGQDD-FDYDSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTF 83
           L+R  SLG++  S  +D  ++D   +P DV +GHF V         R+ +P+S LT P F
Sbjct: 19  LKRCSSLGKKQSSEYNDTHEHDGDSLPLDVPKGHFVVYV--GGNRVRYVLPISFLTRPEF 78

Query: 84  LRLLEAAAEEYGFDHEGAVTVPCRPSELEQIL 115
             LL+ A EE+GFDH   +T+PC     + ++
Sbjct: 79  QLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLI 108

[Close]

BLAST of Carg03218 vs. TAIR10
Match: AT2G16580.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 24  LQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFL 83
           L+R  SLG+++  G     Y+   +P DV +GHF V         R+ VP+S LTN  F 
Sbjct: 20  LKRCSSLGKKNGGG----GYEEVDLPLDVPKGHFPVYV--GHNRSRYIVPISFLTNLDFQ 79

Query: 84  RLLEAAAEEYGFDHEGAVTVPC 106
            LL  A EE+GFDH+  +T+PC
Sbjct: 80  CLLRRAEEEFGFDHDMGLTIPC 95

[Close]

BLAST of Carg03218 vs. Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 24  LQRSLSLGRRSDSGQDDFDYDSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFL 83
           L+R  SLG+++  G     YD   +P DV +GHF V     E   R+ VP+S LT+P F 
Sbjct: 20  LKRCSSLGKKNGGG-----YDEDCLPLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQ 79

Query: 84  RLLEAAAEEYGFDHEGAVTVPC 106
            LL+ A EE+GFDH+  +T+PC
Sbjct: 80  SLLQRAEEEFGFDHDMGLTIPC 94

[Close]

BLAST of Carg03218 vs. Swiss-Prot
Match: sp|P0DKL1|SAU50_HELAN (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 44  DSTPVPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTV 103
           D + +P DV +GHF V     E   R+ VP+SCL +PTF  LL+ + EE+GF+H+  + +
Sbjct: 31  DDSGLPNDVPKGHFVVYV--GERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIII 90

Query: 104 PCR 107
           PC+
Sbjct: 91  PCQ 91

[Close]

BLAST of Carg03218 vs. Swiss-Prot
Match: sp|Q9ZUZ3|SAU32_ARATH (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 50  EDVKEGHFAV-VAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPS 109
           +DV +G  A+ V    EE +RF VP+    +P F++LL+ A +EYGFD +G +T+PC   
Sbjct: 22  KDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVE 81

Query: 110 ELEQILA 116
           E   + A
Sbjct: 82  EFRYVQA 88

[Close]

BLAST of Carg03218 vs. Swiss-Prot
Match: sp|P33079|A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-07
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 51  DVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHE-GAVTVPCRPSE 110
           DV +G+ AV   D  + +RF +P+S L  P+F  LL  A EE+G+DH  G +T+PC+  E
Sbjct: 25  DVPKGYAAVYVGD--KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 84

Query: 111 LEQILA 116
              + A
Sbjct: 85  FLNVTA 88

[Close]

BLAST of Carg03218 vs. Swiss-Prot
Match: sp|Q9SL45|SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 48  VPEDVKEGHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPC 106
           +P+DV +GHF V         R+ VP+S L +  F  LL  A EE+GFDH+  +T+PC
Sbjct: 44  LPQDVPKGHFPVYV--GPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPC 99

[Close]

BLAST of Carg03218 vs. TrEMBL
Match: tr|A0A0A0KGI2|A0A0A0KGI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147590 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.8e-50
Identity = 106/123 (86.18%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDY------DSTPVPEDVKE 60
           M K VT+A KKNGIVKLK+AVGKLQRSLSLGRRSDSGQD+ DY       STPVPEDVKE
Sbjct: 1   MAKHVTIAKKKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDYAVGDDESSTPVPEDVKE 60

Query: 61  GHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQIL 118
           GHFAVVAVDAEEPKRF VPLSCLTNPTFLRLLEAAAEEYGFDHEGA+TVPCRPSELE+IL
Sbjct: 61  GHFAVVAVDAEEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSELERIL 120

[Close]

BLAST of Carg03218 vs. TrEMBL
Match: tr|A0A1S3CNL2|A0A1S3CNL2_CUCME (auxin-responsive protein SAUR32-like OS=Cucumis melo OX=3656 GN=LOC103502995 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.4e-48
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDYD------STPVPEDVKE 60
           M KLVT+A KKNGIVKLK+AVGKLQRSLSLGRRSDSGQD+ D +      ST VPEDVKE
Sbjct: 1   MAKLVTIAKKKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDDEVGDDGSSTLVPEDVKE 60

Query: 61  GHFAVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQIL 118
           GHFAVVAVDAEEPKRF VPLSCLTNPTFLRLLEAAAEEYGF+HEGA+TVPCRPSELE+IL
Sbjct: 61  GHFAVVAVDAEEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFEHEGALTVPCRPSELERIL 120

[Close]

BLAST of Carg03218 vs. TrEMBL
Match: tr|A0A2N9EYY9|A0A2N9EYY9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7656 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.1e-36
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MTKLVTVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFDY---DSTPVPEDVKEGHF 60
           M K  T + K+N IVKLK  V KLQRSL LGR+S S +D++D    D+T VPEDVKEGHF
Sbjct: 1   MAKRKTNSKKRNSIVKLKIVVKKLQRSLLLGRKSSSYRDEYDQDVSDTTSVPEDVKEGHF 60

Query: 61  AVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           +V+AVD  EPKRF VPLS LT+PTF+RLLE AAEEYGFDHEGA+++PCRPSELE+IL E+
Sbjct: 61  SVIAVDGNEPKRFVVPLSYLTHPTFVRLLEQAAEEYGFDHEGALSIPCRPSELERILGEQ 120

[Close]

BLAST of Carg03218 vs. TrEMBL
Match: tr|F6GWA1|F6GWA1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00390 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 8   AMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFD--YDSTPVPEDVKEGHFAVVAVDAE 67
           A KKNGIV+LK  V KLQ+SLSLG++S S  DD +   DS  VP DVKEGHFAV+AVD +
Sbjct: 9   AKKKNGIVRLKIVVEKLQKSLSLGKKSASDYDDLEEVIDSAYVPPDVKEGHFAVIAVDGQ 68

Query: 68  EPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           EPKRF VPL+ LT+P FLRLLE AAEEYGFDHEGA+T+PCRPSELE++LAE+
Sbjct: 69  EPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIPCRPSELERLLAEQ 120

[Close]

BLAST of Carg03218 vs. TrEMBL
Match: tr|D7SND5|D7SND5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00400 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.2e-35
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 1   MTKLV-TVAMKKNGIVKLKSAVGKLQRSLSLGRRSDSGQDDFD--YDSTPVPEDVKEGHF 60
           MTKL  T   +KNGIVKLK  V KLQ+SL LGR+S    D+F    DST VP DVKEGHF
Sbjct: 1   MTKLKRTSGKRKNGIVKLKIVVEKLQKSLLLGRKSACENDEFKDVSDSTYVPADVKEGHF 60

Query: 61  AVVAVDAEEPKRFAVPLSCLTNPTFLRLLEAAAEEYGFDHEGAVTVPCRPSELEQILAEE 118
           AV+AVD +EPKRF VPL+ LT+PTFL+LLE AAEEYGFDHEGA+T+PCRPSELE ILAE+
Sbjct: 61  AVIAVDDDEPKRFVVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESILAEQ 120

The following BLAST results are available for this feature:

BLAST of Carg03218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512258.1	1.9e-57	100.00	auxin-responsive protein SAUR50 [Cucurbita pepo subsp. pepo]	[more]
XP_022986206.1	8.1e-56	97.44	auxin-responsive protein SAUR50 [Cucurbita maxima]	[more]
XP_022944522.1	1.3e-53	100.00	auxin-responsive protein SAUR50 [Cucurbita moschata]	[more]
XP_004145816.1	1.5e-49	86.18	PREDICTED: uncharacterized protein LOC101212725 [Cucumis sativus] >KGN46866.1 hy...	[more]
XP_008465358.1	8.1e-48	84.55	PREDICTED: auxin-responsive protein SAUR32-like [Cucumis melo]	[more]

BLAST of Carg03218 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28085.1	2.7e-21	50.00	SAUR-like auxin-responsive protein family	[more]
AT3G09870.1	2.6e-16	55.22	SAUR-like auxin-responsive protein family	[more]
AT4G34760.1	1.3e-12	43.90	SAUR-like auxin-responsive protein family	[more]
AT1G19830.1	1.9e-11	36.96	SAUR-like auxin-responsive protein family	[more]
AT2G16580.1	9.7e-11	41.46	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg03218 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65695\|SAU50_ARATH	2.4e-11	43.90	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
sp\|P0DKL1\|SAU50_HELAN	1.3e-09	42.86	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
sp\|Q9ZUZ3\|SAU32_ARATH	2.5e-08	40.30	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
sp\|P33079\|A10A5_SOYBN	6.2e-07	40.91	Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q9SL45\|SAU10_ARATH	1.4e-06	43.10	Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR1...	[more]

BLAST of Carg03218 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGI2\|A0A0A0KGI2_CUCSA	9.8e-50	86.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147590 PE=4 SV=1	[more]
tr\|A0A1S3CNL2\|A0A1S3CNL2_CUCME	5.4e-48	84.55	auxin-responsive protein SAUR32-like OS=Cucumis melo OX=3656 GN=LOC103502995 PE=...	[more]
tr\|A0A2N9EYY9\|A0A2N9EYY9_FAGSY	8.1e-36	67.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7656 PE=4 SV=1	[more]
tr\|F6GWA1\|F6GWA1_VITVI	3.1e-35	70.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00390 PE=4 SV=...	[more]
tr\|D7SND5\|D7SND5_VITVI	5.2e-35	70.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03218-RA	Carg03218-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 34..115 e-value: 7.8E-20 score: 70.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	PANTHER	PTHR31374:SF16	AUXIN-RESPONSIVE FAMILY PROTEIN	coord: 8..116
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 8..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03218	Cla008714	Watermelon (97103) v1	carwmB0330
Carg03218	Csa6G147590	Cucumber (Chinese Long) v2	carcuB0371
Carg03218	Csa1G103250	Cucumber (Chinese Long) v2	carcuB0360
Carg03218	MELO3C026914	Melon (DHL92) v3.5.1	carmeB0336
Carg03218	ClCG02G021410	Watermelon (Charleston Gray)	carwcgB0327
Carg03218	CSPI06G11770	Wild cucumber (PI 183967)	carcpiB0374
Carg03218	Cucsa.385860	Cucumber (Gy14) v1	carcgyB0403
Carg03218	CmaCh02G013890	Cucurbita maxima (Rimu)	carcmaB0474
Carg03218	CmoCh20G005420	Cucurbita moschata (Rifu)	carcmoB0464
Carg03218	CmoCh02G014250	Cucurbita moschata (Rifu)	carcmoB0465
Carg03218	Lsi10G012400	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03218	Cp4.1LG05g02880	Cucurbita pepo (Zucchini)	carcpeB0480
Carg03218	Cp4.1LG16g05230	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03218	CsGy1G013350	Cucumber (Gy14) v2	carcgybB0342
Carg03218	CsGy6G011880	Cucumber (Gy14) v2	carcgybB0351
Carg03218	MELO3C026914.2	Melon (DHL92) v3.6.1	carmedB0346
Carg03218	CsaV3_6G014200	Cucumber (Chinese Long) v3	carcucB0375
Carg03218	Cla97C02G047510	Watermelon (97103) v2	carwmbB0346
Carg03218	Bhi10G000123	Wax gourd	carwgoB0421
Carg03218	Bhi03G001207	Wax gourd	carwgoB0423
Carg03218	Bhi08G000213	Wax gourd	carwgoB0427

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03218	Carg02578	Silver-seed gourd	carcarB366

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03218	Silver-seed gourd	carcarB187
Carg03218	Silver-seed gourd	carcarB287
Carg03218	Cucurbita maxima (Rimu)	carcmaB0467
Carg03218	Cucurbita maxima (Rimu)	carcmaB0473
Carg03218	Cucurbita maxima (Rimu)	carcmaB0482
Carg03218	Cucurbita moschata (Rifu)	carcmoB0458
Carg03218	Cucurbita moschata (Rifu)	carcmoB0460
Carg03218	Cucurbita moschata (Rifu)	carcmoB0469
Carg03218	Cucurbita pepo (Zucchini)	carcpeB0470
Carg03218	Cucumber (Chinese Long) v3	carcucB0363
Carg03218	Bottle gourd (USVL1VR-Ls)	carlsiB310
Carg03218	Melon (DHL92) v3.5.1	carmeB0340
Carg03218	Watermelon (97103) v2	carwmbB0340
Carg03218	Watermelon (97103) v2	carwmbB0353
Carg03218	Wax gourd	carwgoB0415