Carg03216 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03216
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ABC transporter F family member 1
Location	Cucurbita_argyrosperma_scaffold_005 : 659242 .. 660134 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCGGAAGACGAGAATCAACAAAACCAGAGATGCTCCAGAAGGGAAGAAATTGGGAGAAGACCGTGATCAATGTGACGAAGTGGGCCTTTCCGTTTGGTTGCAACTTTTAAAGTGCAGGCCCATGGGCTTCCGAATTGTAATTGGGCCAACTTTTAAAGTGCAGCCCAATATCAATACAAAGTAAATTGTCTTATATGCCCTCACGAGGGCGTTAGAATAACTAATTCAGTCGGCTACGCAACCAGAAGAAATTGTTCGTGAAAGACACGTGGAGACATCAGCACGCCTATAAAAAGGAAGCCTCAGCCTCCTGATCGGCAGTATCTCGAACCCTCCATCTGCATCGCATTACGCGTCGCAGGTTCGATAAAAAGCGCAGAACAAAAGCGCCGTGGGAGACGAAGACCGATTTCTTCCTCTTCTCGCTCGCTCTGTCGGTGTCACTTTTGCGTGGTTGTTCTTTATCAATTTCCCCAGGTATGTATATGTGTTCGGGATTCTTCACGATGTCTCTTATTTTGTTTCTATTGTTTTTAGGGTTTCTGTTTGGTGATTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCTTTTAGGTTAAGGATGGTTTCCGACGCGAGCAAGAAGAAAGCTGCTCAGAAGAAGGCGGCTGCGGCGGCCAAGCGTGGAGGAAAAGCAGCGGCGGCTGCCGCTTCTTCCAAGGCTGCAGCGGCCAATTCGCAGAATGGAGTTGATAAGTTGGCTAATGGAGTGGACGCTCTTCAATTATCTGATCGGACTTGTACTGGTGTGCTTTGCTCACATCCTCTCTCCAGAGACATCCGAGTAAGCCCTAATTTTATTCTAGAATCAAATTCTTGTAAATCTATTGAGTGCTTCTTTTAA

mRNA sequence

ATGGAGGATCGGAAGACGAGAATCAACAAAACCAGAGATGCTCCAGAAGGGAAGAAATTGGGAGAAGACCGTGATCAATCGCAGAACAAAAGCGCCGTGGGAGACGAAGACCGATTTCTTCCTCTTCTCGCTCGCTCTGTCGGTGTCACTTTTGCGTGGTTGTTCTTTATCAATTTCCCCAGGTTAAGGATGGTTTCCGACGCGAGCAAGAAGAAAGCTGCTCAGAAGAAGGCGGCTGCGGCGGCCAAGCGTGGAGGAAAAGCAGCGGCGGCTGCCGCTTCTTCCAAGGCTGCAGCGGCCAATTCGCAGAATGGAGTTGATAAGTTGGCTAATGGAGTGGACGCTCTTCAATTATCTGATCGGACTTGTACTGGTGTGCTTTGCTCACATCCTCTCTCCAGAGACATCCGAGTAAGCCCTAATTTTATTCTAGAATCAAATTCTTGTAAATCTATTGAGTGCTTCTTTTAA

Coding sequence (CDS)

ATGGAGGATCGGAAGACGAGAATCAACAAAACCAGAGATGCTCCAGAAGGGAAGAAATTGGGAGAAGACCGTGATCAATCGCAGAACAAAAGCGCCGTGGGAGACGAAGACCGATTTCTTCCTCTTCTCGCTCGCTCTGTCGGTGTCACTTTTGCGTGGTTGTTCTTTATCAATTTCCCCAGGTTAAGGATGGTTTCCGACGCGAGCAAGAAGAAAGCTGCTCAGAAGAAGGCGGCTGCGGCGGCCAAGCGTGGAGGAAAAGCAGCGGCGGCTGCCGCTTCTTCCAAGGCTGCAGCGGCCAATTCGCAGAATGGAGTTGATAAGTTGGCTAATGGAGTGGACGCTCTTCAATTATCTGATCGGACTTGTACTGGTGTGCTTTGCTCACATCCTCTCTCCAGAGACATCCGAGTAAGCCCTAATTTTATTCTAGAATCAAATTCTTGTAAATCTATTGAGTGCTTCTTTTAA

Protein sequence

MEDRKTRINKTRDAPEGKKLGEDRDQSQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRVSPNFILESNSCKSIECFF

Homology

[Close]

BLAST of Carg03216 vs. NCBI nr
Match: KGN46867.1 (hypothetical protein Csa_6G147600 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 9.9e-17
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 24  RDQSQNKSAVGDEDRF------LPLLARSVGVTFAWLFFINFPRLRMVSDA--XXXXXXX 83
           R +  NKSAV DE+RF      LPLL RSVG+    +FF +  RL MVSDA  XXXXXXX
Sbjct: 71  RSKEHNKSAVRDEERFLQALDLLPLLTRSVGLASPSIFFRHL-RLSMVSDAXXXXXXXXX 130

Query: 84  XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD
Sbjct: 131 XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD 190

[Close]

BLAST of Carg03216 vs. NCBI nr
Match: XP_004145757.1 (PREDICTED: ABC transporter F family member 1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Sbjct: 42  QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRI 77

[Close]

BLAST of Carg03216 vs. NCBI nr
Match: XP_008465357.2 (PREDICTED: ABC transporter F family member 1 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Sbjct: 42  QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRI 77

[Close]

BLAST of Carg03216 vs. NCBI nr
Match: XP_022943851.1 (ABC transporter F family member 1 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Sbjct: 40  QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRI 75

[Close]

BLAST of Carg03216 vs. NCBI nr
Match: XP_022958179.1 (ABC transporter F family member 1-like [Cucurbita moschata] >XP_022996162.1 ABC transporter F family member 1-like [Cucurbita maxima] >XP_023521418.1 ABC transporter F family member 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Sbjct: 39  QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRI 74

[Close]

BLAST of Carg03216 vs. TAIR10
Match: AT5G60790.1 (ABC transporter family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 106 VDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           VD L++GVDALQ+SDRTCTGVLCSHP SRDIR+
Sbjct: 39  VDSLSSGVDALQISDRTCTGVLCSHPQSRDIRI 71

[Close]

BLAST of Carg03216 vs. Swiss-Prot
Match: sp|Q9FJH6|AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-09
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 106 VDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           VD L++GVDALQ+SDRTCTGVLCSHP SRDIR+
Sbjct: 39  VDSLSSGVDALQISDRTCTGVLCSHPQSRDIRI 71

[Close]

BLAST of Carg03216 vs. TrEMBL
Match: tr|A0A0A0KEN0|A0A0A0KEN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147600 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 24  RDQSQNKSAVGDEDRF------LPLLARSVGVTFAWLFFINFPRLRMVSDA--XXXXXXX 83
           R +  NKSAV DE+RF      LPLL RSVG+    +FF +  RL MVSDA  XXXXXXX
Sbjct: 71  RSKEHNKSAVRDEERFLQALDLLPLLTRSVGLASPSIFFRHL-RLSMVSDAXXXXXXXXX 130

Query: 84  XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD
Sbjct: 131 XXXXXXXXXXXXXXXXXXXXXXXXXXXQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRD 190

[Close]

BLAST of Carg03216 vs. TrEMBL
Match: tr|A0A1S3CNP6|A0A1S3CNP6_CUCME (ABC transporter F family member 1 OS=Cucumis melo OX=3656 GN=LOC103502994 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Sbjct: 42  QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRI 77

[Close]

BLAST of Carg03216 vs. TrEMBL
Match: tr|A0A2P5CZM9|A0A2P5CZM9_PARAD (Phosphonate C-P lyase system OS=Parasponia andersonii OX=3476 GN=PanWU01x14_109180 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLA+GV A+Q+SDRTCTGVLCSHPLSRDIR+
Sbjct: 38  QNGVDKLADGVGAIQISDRTCTGVLCSHPLSRDIRI 73

[Close]

BLAST of Carg03216 vs. TrEMBL
Match: tr|A0A2P6QH12|A0A2P6QH12_ROSCH (Putative adenosinetriphosphatase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0057741 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVD+LANGV+A+ +SDRTCTGVLCSHPLSRDIR+
Sbjct: 38  QNGVDQLANGVNAMHISDRTCTGVLCSHPLSRDIRI 73

[Close]

BLAST of Carg03216 vs. TrEMBL
Match: tr|A0A218W7R0|A0A218W7R0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025104 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 103 QNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV 139
           QNGVDKLA+GV ++Q+SDRTCTGVLCSHPLSRDIR+
Sbjct: 41  QNGVDKLADGVGSMQISDRTCTGVLCSHPLSRDIRI 76

The following BLAST results are available for this feature:

BLAST of Carg03216 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46867.1	9.9e-17	78.05	hypothetical protein Csa_6G147600 [Cucumis sativus]	[more]
XP_004145757.1	6.2e-11	97.22	PREDICTED: ABC transporter F family member 1 [Cucumis sativus]	[more]
XP_008465357.2	6.2e-11	97.22	PREDICTED: ABC transporter F family member 1 [Cucumis melo]	[more]
XP_022943851.1	6.2e-11	97.22	ABC transporter F family member 1 [Cucurbita moschata]	[more]
XP_022958179.1	6.2e-11	97.22	ABC transporter F family member 1-like [Cucurbita moschata] >XP_022996162.1 ABC ...	[more]

BLAST of Carg03216 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60790.1	2.9e-10	81.82	ABC transporter family protein	[more]

BLAST of Carg03216 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJH6\|AB1F_ARATH	5.2e-09	81.82	ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 ...	[more]

BLAST of Carg03216 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEN0\|A0A0A0KEN0_CUCSA	6.5e-17	78.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147600 PE=4 SV=1	[more]
tr\|A0A1S3CNP6\|A0A1S3CNP6_CUCME	4.1e-11	97.22	ABC transporter F family member 1 OS=Cucumis melo OX=3656 GN=LOC103502994 PE=4 S...	[more]
tr\|A0A2P5CZM9\|A0A2P5CZM9_PARAD	2.9e-09	86.11	Phosphonate C-P lyase system OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1091...	[more]
tr\|A0A2P6QH12\|A0A2P6QH12_ROSCH	5.0e-09	83.33	Putative adenosinetriphosphatase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g005...	[more]
tr\|A0A218W7R0\|A0A218W7R0_PUNGR	6.6e-09	83.33	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025104 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03216-RA	Carg03216-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR19211:SF52	ABC TRANSPORTER F FAMILY MEMBER 1	coord: 64..139
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 64..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03216	Cla97C02G047520	Watermelon (97103) v2	carwmbB0346
Carg03216	Bhi10G000122	Wax gourd	carwgoB0421

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03216	Carg02579	Silver-seed gourd	carcarB366

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03216	Watermelon (97103) v2	carwmbB0340
Carg03216	Watermelon (97103) v2	carwmbB0353
Carg03216	Wax gourd	carwgoB0415
Carg03216	Wax gourd	carwgoB0423
Carg03216	Wax gourd	carwgoB0427
Carg03216	Silver-seed gourd	carcarB187
Carg03216	Silver-seed gourd	carcarB287
Carg03216	Cucumber (Gy14) v2	carcgybB0342
Carg03216	Cucumber (Gy14) v2	carcgybB0351
Carg03216	Cucumber (Gy14) v1	carcgyB0403
Carg03216	Cucurbita maxima (Rimu)	carcmaB0467
Carg03216	Cucurbita maxima (Rimu)	carcmaB0473
Carg03216	Cucurbita maxima (Rimu)	carcmaB0474
Carg03216	Cucurbita maxima (Rimu)	carcmaB0482
Carg03216	Cucurbita moschata (Rifu)	carcmoB0458
Carg03216	Cucurbita moschata (Rifu)	carcmoB0460
Carg03216	Cucurbita moschata (Rifu)	carcmoB0464
Carg03216	Cucurbita moschata (Rifu)	carcmoB0465
Carg03216	Cucurbita moschata (Rifu)	carcmoB0469
Carg03216	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03216	Cucurbita pepo (Zucchini)	carcpeB0470
Carg03216	Cucurbita pepo (Zucchini)	carcpeB0480
Carg03216	Wild cucumber (PI 183967)	carcpiB0374
Carg03216	Cucumber (Chinese Long) v2	carcuB0360
Carg03216	Cucumber (Chinese Long) v2	carcuB0371
Carg03216	Cucumber (Chinese Long) v3	carcucB0363
Carg03216	Cucumber (Chinese Long) v3	carcucB0375
Carg03216	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03216	Bottle gourd (USVL1VR-Ls)	carlsiB310
Carg03216	Melon (DHL92) v3.5.1	carmeB0336
Carg03216	Melon (DHL92) v3.5.1	carmeB0340
Carg03216	Melon (DHL92) v3.6.1	carmedB0346
Carg03216	Watermelon (Charleston Gray)	carwcgB0327
Carg03216	Watermelon (97103) v1	carwmB0330