Carg03054 (gene) Silver-seed gourd

Overview
NameCarg03054
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_008 : 1590711 .. 1591382 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTAATTTATTGAAGTTACTCCGGAAAGAGAATTCCAATTGGAGTTTGGACATGGGGTTAGTGAAAAAAACACAAGCTTTATGATTGTTGGACGATTGAGTGTGTTCGGAAGTACTGTTGAAACACTTTTGGTTGTCTAAGATTATTGTTGGTCTTAAACAAGTTACGCAGAGCAGGTAAGTGACAGCCAAGATCTGGATTGAAATATACCAACAACCTGTATTTTCATATTCGAGCAAAGTTTCAAATGAACATTTCAGTACCTCTTCTACGCCATGGCTCATGGGACACTTGGTTACTGCCTCTCCCTTCAGGTACTGCATCCATTGAAATTGAACTTATAGCTCGGACGGCCATGGGGATTGACAGAGAAATTGAGAAGGTGAGCCTTCATTGTTTTTCTCACAATTGACTTGGTCTATTACACGGTAGGGCAAACTTTACGTGTCAATATTTTTGAAACGTAAGTTTCATCTTCTCAATGCAGCTTATCTCATTGAATTGTTATCTGTGTGCTTATGCTTATGATGACCATATATATATATTTTTTGTCCATTTTGAAACGTGTAGTTCGCCGCGGATGTTTACAGGACTGAGAATGCTGCGTATGCTTTTGTTGAGATTGGGTGTGGACTTGAATGTTTCTCATCTCAGGAAACAGTTCTATGTTGA

mRNA sequence

ACTAATTTATTGAAGTTACTCCGGAAAGAGAATTCCAATTGGAGTTTGGACATGGGGTTAGTGAAAAAAACACAAGCTTTATGATTGTTGGACGATTGAGTGTGTTCGGAAGTACTGTTGAAACACTTTTGGTTGTCTAAGATTATTGTTGGTCTTAAACAAGTTACGCAGAGCAGGTAAGTGACAGCCAAGATCTGGATTGAAATATACCAACAACCTGTATTTTCATATTCGAGCAAAGTTTCAAATGAACATTTCAGTACCTCTTCTACGCCATGGCTCATGGGACACTTGGTTACTGCCTCTCCCTTCAGGTACTGCATCCATTGAAATTGAACTTATAGCTCGGACGGCCATGGGGATTGACAGAGAAATTGAGAAGTTCGCCGCGGATGTTTACAGGACTGAGAATGCTGCGTATGCTTTTGTTGAGATTGGGTGTGGACTTGAATGTTTCTCATCTCAGGAAACAGTTCTATGTTGA

Coding sequence (CDS)

ATGAACATTTCAGTACCTCTTCTACGCCATGGCTCATGGGACACTTGGTTACTGCCTCTCCCTTCAGGTACTGCATCCATTGAAATTGAACTTATAGCTCGGACGGCCATGGGGATTGACAGAGAAATTGAGAAGTTCGCCGCGGATGTTTACAGGACTGAGAATGCTGCGTATGCTTTTGTTGAGATTGGGTGTGGACTTGAATGTTTCTCATCTCAGGAAACAGTTCTATGTTGA

Protein sequence

MNISVPLLRHGSWDTWLLPLPSGTASIEIELIARTAMGIDREIEKFAADVYRTENAAYAFVEIGCGLECFSSQETVLC
Homology
[Close]
BLAST of Carg03054 vs. NCBI nr
Match: XP_023536239.1 (uncharacterized protein LOC111797469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MNISVPLLRHGSWDTWLLPLPSGTASIEIELIARTAMGIDREIEKFAADVYRTENAAYAF 60
          MNISVP+LRHGSWD+WLLPLPSGTASIEIELIAR AMGIDREIEKFA DVYRTENAAYA 
Sbjct: 1  MNISVPVLRHGSWDSWLLPLPSGTASIEIELIARMAMGIDREIEKFAVDVYRTENAAYAL 60

Query: 61 VEIGCGL 68
          + +G  L
Sbjct: 61 LRLGVDL 67

The following BLAST results are available for this feature:
BLAST of Carg03054 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023536239.12.4e-2485.07uncharacterized protein LOC111797469 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg03054 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg03054 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03054 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03054-RACarg03054-RAmRNA