Carg03026 (gene) Silver-seed gourd

Overview
NameCarg03026
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionamino acid permease 6
LocationCucurbita_argyrosperma_scaffold_008 : 1449865 .. 1450406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCATACTTCTTCCCCTTCACTTCCCATTCCACCCCTCGATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTGAAATCCGCCGACATGAATGCCATTTAACTCCTTAGTACTCCCATCACTTTATGTTCTAAGTTCTGTAAATGAACGCTATAACCTGCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

mRNA sequence

TATCATACTTCTTCCCCTTCACTTCCCATTCCACCCCTCGATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

Coding sequence (CDS)

ATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

Protein sequence

MAAHRLPKNSPKAALGFDKNFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLNYFPIEVYLARTKLPRFSFTCIWPEDIELELDPFKAWPKMSRHTNPSKLELISTKS
Homology
[Close]
BLAST of Carg03026 vs. NCBI nr
Match: XP_004136237.1 (PREDICTED: amino acid permease 6 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH+INLPFNGEYQLN   
Sbjct: 331 VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHTINLPFNGEYQLNYFR 390

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 391 LIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 442

[Close]
BLAST of Carg03026 vs. NCBI nr
Match: KGN60300.1 (hypothetical protein Csa_3G894480 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH+INLPFNGEYQLN   
Sbjct: 76  VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHTINLPFNGEYQLNYFR 135

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 136 LIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 187

[Close]
BLAST of Carg03026 vs. NCBI nr
Match: XP_022159715.1 (amino acid permease 6-like [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH INLPF+GEYQL+   
Sbjct: 339 VHLVGAYQVFCQPVYGFVEKWCSTKW--------PESKFITTEHLINLPFHGEYQLSYFR 398

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+ARTKLPRFSFT  W
Sbjct: 399 LIWRTAYVIVTAVIAMIFPFFNDFLGLLGAASFWPLTVYFPIEMYIARTKLPRFSFTWTW 450

[Close]
BLAST of Carg03026 vs. NCBI nr
Match: XP_008466098.1 (PREDICTED: amino acid permease 6 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-06
Identity = 42/120 (35.00%), Postives = 50/120 (41.67%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH INLPFNGEYQLN   
Sbjct: 164 VHLVGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHVINLPFNGEYQLNYFR 223

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 224 LIWRTVYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 275

[Close]
BLAST of Carg03026 vs. NCBI nr
Match: XP_022941298.1 (amino acid permease 6-like [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 41/120 (34.17%), Postives = 50/120 (41.67%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH I LPFNGEY L+   
Sbjct: 331 VHLVGAYQVFCQPVYGFVEKWCSTRW--------PESKFITTEHIIKLPFNGEYPLSYFR 390

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFSFT IW
Sbjct: 391 LIWRTAYVIVTTVIAMIFPFFNAFLALLGATSFWPLTVYFPVEMYIARTKLPRFSFTWIW 442

[Close]
BLAST of Carg03026 vs. TrEMBL
Match: tr|A0A0A0LE46|A0A0A0LE46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894480 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.0e-07
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH+INLPFNGEYQLN   
Sbjct: 76  VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHTINLPFNGEYQLNYFR 135

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 136 LIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 187

[Close]
BLAST of Carg03026 vs. TrEMBL
Match: tr|A0A1S3CQR5|A0A1S3CQR5_CUCME (amino acid permease 6 OS=Cucumis melo OX=3656 GN=LOC103503623 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 42/120 (35.00%), Postives = 50/120 (41.67%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH INLPFNGEYQLN   
Sbjct: 164 VHLVGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHVINLPFNGEYQLNYFR 223

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 224 LIWRTVYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 275

[Close]
BLAST of Carg03026 vs. TrEMBL
Match: tr|A0A118K414|A0A118K414_CYNCS (Amino acid transporter, transmembrane OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014849 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 37/120 (30.83%), Postives = 51/120 (42.50%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T+EH +N+PF+GEY +N   
Sbjct: 291 IHLIGAYQVFCQPIFGFVEMKCKQRW--------PESKFITREHVVNVPFHGEYCVNMFR 350

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+AR K+PRFSFT +W
Sbjct: 351 LVWRTLYVMLTALIAMIFPFFNSFLGLIGAGSFYPLTVYFPIEMYIARAKIPRFSFTWVW 402

[Close]
BLAST of Carg03026 vs. TrEMBL
Match: tr|M5XD49|M5XD49_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa004980mg PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 37/120 (30.83%), Postives = 49/120 (40.83%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G + + C   W         ESKF+  EH++NLPF+G Y  N   
Sbjct: 335 IHLIGAYQVFCQPIFGFVESQCAKRW--------PESKFINSEHAVNLPFHGAYCFNSFR 394

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+ARTK+PRFSFT  W
Sbjct: 395 LVWRTAYVVMTAILAMLFPFFNDFLGLLGAASFWPLTVYFPIEMYIARTKMPRFSFTWAW 446

[Close]
BLAST of Carg03026 vs. TrEMBL
Match: tr|A0A251RHV5|A0A251RHV5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G543000 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 37/120 (30.83%), Postives = 49/120 (40.83%), Query Frame = 0 

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G + + C   W         ESKF+  EH++NLPF+G Y  N   
Sbjct: 394 IHLIGAYQVFCQPIFGFVESQCAKRW--------PESKFINSEHAVNLPFHGAYCFNSFR 453

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+ARTK+PRFSFT  W
Sbjct: 454 LVWRTAYVVMTAILAMLFPFFNDFLGLLGAASFWPLTVYFPIEMYIARTKMPRFSFTWAW 505

The following BLAST results are available for this feature:
BLAST of Carg03026 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136237.11.1e-0635.00PREDICTED: amino acid permease 6 [Cucumis sativus][more]
KGN60300.11.1e-0635.00hypothetical protein Csa_3G894480 [Cucumis sativus][more]
XP_022159715.11.8e-0635.00amino acid permease 6-like [Momordica charantia][more]
XP_008466098.13.1e-0635.00PREDICTED: amino acid permease 6 [Cucumis melo][more]
XP_022941298.14.0e-0634.17amino acid permease 6-like [Cucurbita moschata][more]
BLAST of Carg03026 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg03026 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03026 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE46|A0A0A0LE46_CUCSA7.0e-0735.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894480 PE=4 SV=1[more]
tr|A0A1S3CQR5|A0A1S3CQR5_CUCME2.0e-0635.00amino acid permease 6 OS=Cucumis melo OX=3656 GN=LOC103503623 PE=4 SV=1[more]
tr|A0A118K414|A0A118K414_CYNCS1.7e-0530.83Amino acid transporter, transmembrane OS=Cynara cardunculus var. scolymus OX=598... [more]
tr|M5XD49|M5XD49_PRUPE6.5e-0530.83Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa004980mg PE=4 SV=1[more]
tr|A0A251RHV5|A0A251RHV5_PRUPE6.5e-0530.83Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G543000 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03026-RACarg03026-RAmRNA