Carg03016 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03016
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_008 : 1366676 .. 1366930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGACGTCGATTTGGAAGTGTTTAAAGTCGAAGATTTCGTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGCGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCTCCACCTAAAAAGAAATAA

mRNA sequence

ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGACGTCGATTTGGAAGTGTTTAAAGTCGAAGATTTCGTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGCGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCTCCACCTAAAAAGAAATAA

Coding sequence (CDS)

ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGACGTCGATTTGGAAGTGTTTAAAGTCGAAGATTTCGTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGCGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCTCCACCTAAAAAGAAATAA

Protein sequence

MEIEGPEKKKSKETTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARYAVASKPPPKKK

Homology

[Close]

BLAST of Carg03016 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_3G893310 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 7   EKKKSK-ETTSIWKCLKSKISSGKKEGT-TSKNE-----------------HGKFSYDAV 66
           EK+K+K ET S W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64

Query: 67  SYAQNFDDGLANADDEGSSRSFSARYAVASKPPPKK 84
           SYA+NFD+GLANAD EGS RSFSARYAV SKPP KK
Sbjct: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 100

[Close]

BLAST of Carg03016 vs. NCBI nr
Match: KOM41812.1 (hypothetical protein LR48_Vigan04g201000 [Vigna angularis] >BAT78419.1 hypothetical protein VIGAN_02109300 [Vigna angularis var. angularis])

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 16 SIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARYAV 75
          S W CLK K+   K+  T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 17 SCWGCLKIKLPWTKR--TSSCKPVGGFKYDPLSYAQNFDDGLVEDDEESLHRGFSARYAA 76

Query: 76 AS 78
           S
Sbjct: 77 PS 76

[Close]

BLAST of Carg03016 vs. NCBI nr
Match: AES98323.1 (hypothetical protein MTR_5g067050 [Medicago truncatula])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 14 TTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARY 73
          T S W C K K+   K++ T +K+  G F YD +SY+QNFD+GL   DDE S R FSARY
Sbjct: 12 TLSCWGCFKLKLPWTKRKNTCNKST-GGFGYDPLSYSQNFDEGLME-DDEESCRRFSARY 71

Query: 74 AVAS 78
          A  S
Sbjct: 72 AAPS 73

[Close]

BLAST of Carg03016 vs. NCBI nr
Match: XP_007137662.1 (hypothetical protein PHAVU_009G145200g [Phaseolus vulgaris] >ESW09656.1 hypothetical protein PHAVU_009G145200g [Phaseolus vulgaris])

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 36/77 (46.75%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 1  MEIEGPEKKKSKETTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANA 60
          ME     + K     S W CLK K+   K+  T+S    G F YD +SYAQNFD+GL   
Sbjct: 1  MEKSSSSRSKLNGWLSCWGCLKMKLPWAKR--TSSNKPVGGFKYDPLSYAQNFDEGLVE- 60

Query: 61 DDEGSSRSFSARYAVAS 78
          DDE   R FSARYA  S
Sbjct: 61 DDEELHRGFSARYAAPS 74

[Close]

BLAST of Carg03016 vs. TrEMBL
Match: tr|A0A0A0LJR5|A0A0A0LJR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 7   EKKKSK-ETTSIWKCLKSKISSGKKEGT-TSKNE-----------------HGKFSYDAV 66
           EK+K+K ET S W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64

Query: 67  SYAQNFDDGLANADDEGSSRSFSARYAVASKPPPKK 84
           SYA+NFD+GLANAD EGS RSFSARYAV SKPP KK
Sbjct: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 100

[Close]

BLAST of Carg03016 vs. TrEMBL
Match: tr|A0A0L9UGW4|A0A0L9UGW4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g201000 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-05
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 16 SIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARYAV 75
          S W CLK K+   K+  T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 17 SCWGCLKIKLPWTKR--TSSCKPVGGFKYDPLSYAQNFDDGLVEDDEESLHRGFSARYAA 76

Query: 76 AS 78
           S
Sbjct: 77 PS 76

[Close]

BLAST of Carg03016 vs. TrEMBL
Match: tr|A0A0S3RCU8|A0A0S3RCU8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G109300 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-05
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 16 SIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARYAV 75
          S W CLK K+   K+  T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 17 SCWGCLKIKLPWTKR--TSSCKPVGGFKYDPLSYAQNFDDGLVEDDEESLHRGFSARYAA 76

Query: 76 AS 78
           S
Sbjct: 77 PS 76

[Close]

BLAST of Carg03016 vs. TrEMBL
Match: tr|G7K5Z3|G7K5Z3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11428457 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-05
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 14 TTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANADDEGSSRSFSARY 73
          T S W C K K+   K++ T +K+  G F YD +SY+QNFD+GL   DDE S R FSARY
Sbjct: 12 TLSCWGCFKLKLPWTKRKNTCNKST-GGFGYDPLSYSQNFDEGLME-DDEESCRRFSARY 71

Query: 74 AVAS 78
          A  S
Sbjct: 72 AAPS 73

[Close]

BLAST of Carg03016 vs. TrEMBL
Match: tr|V7AZM1|V7AZM1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G145200g PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 36/77 (46.75%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 1  MEIEGPEKKKSKETTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANA 60
          ME     + K     S W CLK K+   K+  T+S    G F YD +SYAQNFD+GL   
Sbjct: 1  MEKSSSSRSKLNGWLSCWGCLKMKLPWAKR--TSSNKPVGGFKYDPLSYAQNFDEGLVE- 60

Query: 61 DDEGSSRSFSARYAVAS 78
          DDE   R FSARYA  S
Sbjct: 61 DDEELHRGFSARYAAPS 74

The following BLAST results are available for this feature:

BLAST of Carg03016 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60281.1	8.8e-12	55.21	hypothetical protein Csa_3G893310 [Cucumis sativus]	[more]
KOM41812.1	3.6e-05	53.23	hypothetical protein LR48_Vigan04g201000 [Vigna angularis] >BAT78419.1 hypotheti...	[more]
AES98323.1	8.0e-05	51.56	hypothetical protein MTR_5g067050 [Medicago truncatula]	[more]
XP_007137662.1	1.8e-04	46.75	hypothetical protein PHAVU_009G145200g [Phaseolus vulgaris] >ESW09656.1 hypothet...	[more]

BLAST of Carg03016 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03016 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03016 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJR5\|A0A0A0LJR5_CUCSA	5.8e-12	55.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1	[more]
tr\|A0A0L9UGW4\|A0A0L9UGW4_PHAAN	2.4e-05	53.23	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g201000 PE...	[more]
tr\|A0A0S3RCU8\|A0A0S3RCU8_PHAAN	2.4e-05	53.23	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G...	[more]
tr\|G7K5Z3\|G7K5Z3_MEDTR	5.3e-05	51.56	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11428457 PE=4 SV=1	[more]
tr\|V7AZM1\|V7AZM1_PHAVU	1.2e-04	46.75	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G145200g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03016-RA	Carg03016-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..84
None	No IPR available	PANTHER	PTHR33168:SF6	SUBFAMILY NOT NAMED	coord: 12..79
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 12..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03016	Csa3G893310	Cucumber (Chinese Long) v2	carcuB0655
Carg03016	ClCG11G014780	Watermelon (Charleston Gray)	carwcgB0610
Carg03016	CSPI03G45720	Wild cucumber (PI 183967)	carcpiB0665
Carg03016	CmaCh09G006030	Cucurbita maxima (Rimu)	carcmaB0889
Carg03016	Cp4.1LG06g03940	Cucurbita pepo (Zucchini)	carcpeB0906
Carg03016	CsaV3_3G048170	Cucumber (Chinese Long) v3	carcucB0666

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03016	Silver-seed gourd	carcarB066
Carg03016	Silver-seed gourd	carcarB424
Carg03016	Silver-seed gourd	carcarB554
Carg03016	Silver-seed gourd	carcarB557
Carg03016	Cucumber (Gy14) v2	carcgybB0632
Carg03016	Cucumber (Gy14) v1	carcgyB0706
Carg03016	Cucumber (Gy14) v1	carcgyB0712
Carg03016	Cucurbita maxima (Rimu)	carcmaB0892
Carg03016	Cucurbita maxima (Rimu)	carcmaB0897
Carg03016	Cucurbita maxima (Rimu)	carcmaB0900
Carg03016	Cucurbita moschata (Rifu)	carcmoB0873
Carg03016	Cucurbita moschata (Rifu)	carcmoB0865
Carg03016	Cucurbita moschata (Rifu)	carcmoB0868
Carg03016	Cucurbita moschata (Rifu)	carcmoB0877
Carg03016	Cucurbita pepo (Zucchini)	carcpeB0894
Carg03016	Cucurbita pepo (Zucchini)	carcpeB0899
Carg03016	Cucurbita pepo (Zucchini)	carcpeB0907
Carg03016	Cucumber (Chinese Long) v2	carcuB0659
Carg03016	Cucumber (Chinese Long) v3	carcucB0670
Carg03016	Bottle gourd (USVL1VR-Ls)	carlsiB574
Carg03016	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg03016	Melon (DHL92) v3.5.1	carmeB0631
Carg03016	Melon (DHL92) v3.5.1	carmeB0636
Carg03016	Melon (DHL92) v3.6.1	carmedB0640
Carg03016	Melon (DHL92) v3.6.1	carmedB0645
Carg03016	Watermelon (97103) v1	carwmB0633
Carg03016	Watermelon (97103) v1	carwmB0634
Carg03016	Watermelon (97103) v2	carwmbB0655
Carg03016	Watermelon (97103) v2	carwmbB0656
Carg03016	Wax gourd	carwgoB0751
Carg03016	Wax gourd	carwgoB0752