Carg02939 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02939
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Stress response NST1-like protein
Location	Cucurbita_argyrosperma_scaffold_008 : 897219 .. 897636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGCAGAAGAGGATTATCGAGCCATTTCTCGGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGGTGATTCAAGTGAAAGATTTAGAGAAGCCGGAGAATCCTTTCAACAAGAGGAAGAGGATTTTAATGGCGTCGAAATGGTCGAGAAAAGCTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCCCTGGACGAAGACGAAGAAGAAAAGTATCACAAAGAAGCAGCTGCAGGTTCCGATTCAGAGGACAGAGATCGAGGAAGCGATGAAGAAGATGAAGAGAATGAACGAAGAGGACGAACCCTAGGGCACAGGTTCCATGATCGGAAGCTCGTTAATGGCTTCAAATCCAAGAGCTGCTTTGATCTGCAGAATATGAACAGCGATAACTCGCTATGA

mRNA sequence

ATGAAATTGCAGAAGAGGATTATCGAGCCATTTCTCGGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGATTTAGAGAAGCCGGAGAATCCTTTCAACAAGAGGAAGAGGATTTTAATGGCGTCGAAATGGTCGAGAAAAGCTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCCCTGGACGAAGACGAAGAAGAAAAGTATCACAAAGAAGCAGCTGCAGGTTCCGATTCAGAGGACAGAGATCGAGGAAGCGATGAAGAAGATGAAGAGAATGAACGAAGAGGACGAACCCTAGGGCACAGGTTCCATGATCGGAAGCTCGTTAATGGCTTCAAATCCAAGAGCTGCTTTGATCTGCAGAATATGAACAGCGATAACTCGCTATGA

Coding sequence (CDS)

ATGAAATTGCAGAAGAGGATTATCGAGCCATTTCTCGGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGATTTAGAGAAGCCGGAGAATCCTTTCAACAAGAGGAAGAGGATTTTAATGGCGTCGAAATGGTCGAGAAAAGCTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCCCTGGACGAAGACGAAGAAGAAAAGTATCACAAAGAAGCAGCTGCAGGTTCCGATTCAGAGGACAGAGATCGAGGAAGCGATGAAGAAGATGAAGAGAATGAACGAAGAGGACGAACCCTAGGGCACAGGTTCCATGATCGGAAGCTCGTTAATGGCTTCAAATCCAAGAGCTGCTTTGATCTGCAGAATATGAACAGCGATAACTCGCTATGA

Protein sequence

MKLQKRIIEPFLGEIEVVCESIRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLALDEDEEEKYHKEAAAGSDSEDRDRGSDEEDEENERRGRTLGHRFHDRKLVNGFKSKSCFDLQNMNSDNSL

Homology

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BLAST of Carg02939 vs. NCBI nr
Match: XP_022937406.1 (uncharacterized protein LOC111443706 [Cucurbita moschata] >XP_023535797.1 uncharacterized protein LOC111797124 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.7 bits (343), Expect = 5.6e-29
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL---XXXXXXXXXXXXXXXX 81
           ++DLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL   XXXXXXXXXXXXXXXX
Sbjct: 125 VKDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLAXXXXXXXXXXXXXXXXXX 184

Query: 82  XXXXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQNMNSDNSL 134
           XXXXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQNMNSDNSL
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQNMNSDNSL 239

[Close]

BLAST of Carg02939 vs. NCBI nr
Match: XP_022975769.1 (uncharacterized protein LOC111476326 [Cucurbita maxima])

HSP 1 Score: 129.4 bits (324), Expect = 9.0e-27
Identity = 107/118 (90.68%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL------XXXXXXXXXXXXX 81
           ++DLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL      XXXXXXXXXXXXX
Sbjct: 125 VKDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLAXXXXXXXXXXXXXXXXXX 184

Query: 82  XXXXXXXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQNMNSDNSL 134
           XXXXXXXXXXXXXXXXXXXXXXXXX  LGHRFHD+KLVNGFKSKSCFDLQNMNSDNSL
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXLGHRFHDQKLVNGFKSKSCFDLQNMNSDNSL 242

[Close]

BLAST of Carg02939 vs. NCBI nr
Match: XP_008466301.1 (PREDICTED: uncharacterized protein LOC103503753 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 83/105 (79.05%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSR-KASFYNWPNPKSMPLLXXXXXXXXXXXXXXXXXX 81
           ++DLEKPENPFNKR+RILMASKWSR KASFYNWPNPKSMPLL            XXXXXX
Sbjct: 124 VKDLEKPENPFNKRRRILMASKWSRKKASFYNWPNPKSMPLL------ALNENDXXXXXX 183

Query: 82  XXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQ 126
           XXXXXXXXXXXXXXXXXX  R LG RFHD KLVNGFK KSCFDLQ
Sbjct: 184 XXXXXXXXXXXXXXXXXXRRRNLGQRFHDGKLVNGFKFKSCFDLQ 222

[Close]

BLAST of Carg02939 vs. NCBI nr
Match: XP_022137206.1 (transcription initiation factor TFIID subunit 7-like [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLXXXXXXXXXXXXXXXXXXX 81
           ++DLEKPENPFNKR+RILMASKWSRK SFYNWPNPKSMPLL      XXXXXXXXXXXXX
Sbjct: 131 VKDLEKPENPFNKRRRILMASKWSRKGSFYNWPNPKSMPLL--ALNEXXXXXXXXXXXXX 190

Query: 82  XXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQ 126
           XXXXXXXXXXXXXXXXXXX  L  +FHDRKLVNG KSKSCFDLQ
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXLASKFHDRKLVNGIKSKSCFDLQ 232

[Close]

BLAST of Carg02939 vs. NCBI nr
Match: XP_022940912.1 (uncharacterized protein LOC111446357 [Cucurbita moschata])

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLXXXXXXXXXXXXXXXXXXX 81
           ++DLEKP+NPFNKR+RILMASKWSRKASFY+W NPKSMPLL      XXXXXXXXXXXXX
Sbjct: 109 VKDLEKPDNPFNKRRRILMASKWSRKASFYSWRNPKSMPLL---ALNXXXXXXXXXXXXX 168

Query: 82  XXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQ 126
           XXXXXXXXXXXXXXXXXXX TLG R+HDRKLVNGFKS SCFDLQ
Sbjct: 169 XXXXXXXXXXXXXXXXXXXXTLGQRYHDRKLVNGFKSMSCFDLQ 209

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BLAST of Carg02939 vs. TAIR10
Match: AT2G24550.1 (unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 13  GEIEVVCESIRDLEKPENPFNKRKRILMASKWSRK------ASFYNWPNPKSMPLL 63
           G +       +DLEK ENPFNKR+R+++A+K  R+      ++FY+W NP SMPLL
Sbjct: 123 GNLMEAASKAKDLEKVENPFNKRRRLVIANKLRRRGRSMSASNFYSWQNPNSMPLL 178

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BLAST of Carg02939 vs. TAIR10
Match: AT5G24890.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 12  LGEIEVVCESIRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL 63
           LGEI     S++++ K ENP NKR+R+ + +K +RK SFY+W NPKSMPLL
Sbjct: 125 LGEI----GSVKEVAKQENPLNKRRRLQICNKLARK-SFYSWQNPKSMPLL 170

[Close]

BLAST of Carg02939 vs. TAIR10
Match: AT4G31510.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 5.8e-04
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 24  DLEKPENPFNKRKRILMASKWSRKA-----SFYNWPNPKSMPLL 63
           DL K E+P NKR+R+L+A+K  R++     S Y   NP SMPLL
Sbjct: 108 DLVKVESPLNKRRRLLIANKLRRRSSLSSFSIYTKINPNSMPLL 151

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BLAST of Carg02939 vs. TrEMBL
Match: tr|A0A1S3CQX1|A0A1S3CQX1_CUCME (uncharacterized protein LOC103503753 OS=Cucumis melo OX=3656 GN=LOC103503753 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 83/105 (79.05%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSR-KASFYNWPNPKSMPLLXXXXXXXXXXXXXXXXXX 81
           ++DLEKPENPFNKR+RILMASKWSR KASFYNWPNPKSMPLL            XXXXXX
Sbjct: 124 VKDLEKPENPFNKRRRILMASKWSRKKASFYNWPNPKSMPLL------ALNENDXXXXXX 183

Query: 82  XXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQ 126
           XXXXXXXXXXXXXXXXXX  R LG RFHD KLVNGFK KSCFDLQ
Sbjct: 184 XXXXXXXXXXXXXXXXXXRRRNLGQRFHDGKLVNGFKFKSCFDLQ 222

[Close]

BLAST of Carg02939 vs. TrEMBL
Match: tr|A0A0A0LEH9|A0A0A0LEH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881860 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSR-KASFYNWPNPKSMPLLXXXXXXXXXXXXXXXXXX 81
           ++DLEK ENPFNKR+RILMASKWSR K SFYNWPNPKSMPLL          XXXXXXXX
Sbjct: 125 VKDLEKAENPFNKRRRILMASKWSRKKGSFYNWPNPKSMPLL-------ALNXXXXXXXX 184

Query: 82  XXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQ 126
           XXXXXXXXXXXXXXXXXXX R+LG RFHD KLVNG K KSCFDLQ
Sbjct: 185 XXXXXXXXXXXXXXXXXXXRRSLGQRFHDGKLVNGLKFKSCFDLQ 222

[Close]

BLAST of Carg02939 vs. TrEMBL
Match: tr|A0A067KMD7|A0A067KMD7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07026 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.3e-13
Identity = 72/113 (63.72%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 18  VCESIRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLLXXXXXXXXXXXXXXX 77
           +  +++DLEKPENPFNKR+RILMA+KWSRK+SFY+W NPKSMPLL   XXXXXXXXXXXX
Sbjct: 134 IVSTVKDLEKPENPFNKRRRILMATKWSRKSSFYSWRNPKSMPLLALNXXXXXXXXXXXX 193

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXRTLGHRFHDRKLVNGFKSKSCFDLQNMNSD 131
           XXXXXXXXXXXXXXXX            +  DRK  N FK  SCF L ++  +
Sbjct: 194 XXXXXXXXXXXXXXXXPKL--------SKLQDRKFKNSFKCHSCFSLADLQQE 238

[Close]

BLAST of Carg02939 vs. TrEMBL
Match: tr|A0A2C9W3C2|A0A2C9W3C2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G004500 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 33/41 (80.49%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL 63
           ++DLEKP NPFNKR+R++MA+KWSRK+SFYNWPNPKSMPLL
Sbjct: 141 VKDLEKPVNPFNKRRRLIMANKWSRKSSFYNWPNPKSMPLL 181

[Close]

BLAST of Carg02939 vs. TrEMBL
Match: tr|A0A2C9UB94|A0A2C9UB94_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135100 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 32/41 (78.05%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 22  IRDLEKPENPFNKRKRILMASKWSRKASFYNWPNPKSMPLL 63
           ++DLEKPENPFNKR+R++MA+KW+RK+S YNWPNPKSMPLL
Sbjct: 140 VKDLEKPENPFNKRRRLIMANKWARKSSLYNWPNPKSMPLL 180

The following BLAST results are available for this feature:

BLAST of Carg02939 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937406.1	5.6e-29	95.65	uncharacterized protein LOC111443706 [Cucurbita moschata] >XP_023535797.1 unchar...	[more]
XP_022975769.1	9.0e-27	90.68	uncharacterized protein LOC111476326 [Cucurbita maxima]	[more]
XP_008466301.1	3.7e-20	79.05	PREDICTED: uncharacterized protein LOC103503753 [Cucumis melo]	[more]
XP_022137206.1	6.2e-20	84.62	transcription initiation factor TFIID subunit 7-like [Momordica charantia]	[more]
XP_022940912.1	6.2e-20	84.62	uncharacterized protein LOC111446357 [Cucurbita moschata]	[more]

BLAST of Carg02939 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24550.1	1.8e-08	46.43	unknown protein	[more]
AT5G24890.1	3.0e-08	54.90	unknown protein	[more]
AT4G31510.1	5.8e-04	50.00	unknown protein	[more]

BLAST of Carg02939 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02939 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQX1\|A0A1S3CQX1_CUCME	2.4e-20	79.05	uncharacterized protein LOC103503753 OS=Cucumis melo OX=3656 GN=LOC103503753 PE=...	[more]
tr\|A0A0A0LEH9\|A0A0A0LEH9_CUCSA	2.3e-18	79.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881860 PE=4 SV=1	[more]
tr\|A0A067KMD7\|A0A067KMD7_JATCU	8.3e-13	63.72	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07026 PE=4 SV=1	[more]
tr\|A0A2C9W3C2\|A0A2C9W3C2_MANES	1.4e-12	80.49	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G004500 PE=4 SV=...	[more]
tr\|A0A2C9UB94\|A0A2C9UB94_MANES	2.4e-12	78.05	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135100 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02939-RA	Carg02939-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..104
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 17..130
None	No IPR available	PANTHER	PTHR33172:SF15	SUBFAMILY NOT NAMED	coord: 17..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02939	Cla009968	Watermelon (97103) v1	carwmB0632
Carg02939	Cla022252	Watermelon (97103) v1	carwmB0628
Carg02939	Csa2G377970	Cucumber (Chinese Long) v2	carcuB0653
Carg02939	Csa3G881860	Cucumber (Chinese Long) v2	carcuB0655
Carg02939	MELO3C003623	Melon (DHL92) v3.5.1	carmeB0631
Carg02939	MELO3C011183	Melon (DHL92) v3.5.1	carmeB0628
Carg02939	ClCG08G012630	Watermelon (Charleston Gray)	carwcgB0619
Carg02939	ClCG05G026470	Watermelon (Charleston Gray)	carwcgB0615
Carg02939	CSPI02G22710	Wild cucumber (PI 183967)	carcpiB0664
Carg02939	CSPI03G44680	Wild cucumber (PI 183967)	carcpiB0665
Carg02939	Cucsa.311050	Cucumber (Gy14) v1	carcgyB0712
Carg02939	Cucsa.161710	Cucumber (Gy14) v1	carcgyB0708
Carg02939	CmaCh01G015740	Cucurbita maxima (Rimu)	carcmaB0894
Carg02939	CmaCh09G005290	Cucurbita maxima (Rimu)	carcmaB0889
Carg02939	CmaCh05G006240	Cucurbita maxima (Rimu)	carcmaB0902
Carg02939	CmoCh01G016190	Cucurbita moschata (Rifu)	carcmoB0870
Carg02939	CmoCh09G005190	Cucurbita moschata (Rifu)	carcmoB0865
Carg02939	CmoCh05G006510	Cucurbita moschata (Rifu)	carcmoB0879
Carg02939	Lsi08G011210	Bottle gourd (USVL1VR-Ls)	carlsiB581
Carg02939	Lsi04G021970	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02939	Cp4.1LG11g05350	Cucurbita pepo (Zucchini)	carcpeB0896
Carg02939	Cp4.1LG06g04580	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02939	Cp4.1LG02g04670	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02939	CsGy3G042120	Cucumber (Gy14) v2	carcgybB0632
Carg02939	MELO3C003623.2	Melon (DHL92) v3.6.1	carmedB0640
Carg02939	MELO3C011183.2	Melon (DHL92) v3.6.1	carmedB0638
Carg02939	CsaV3_2G031340	Cucumber (Chinese Long) v3	carcucB0664
Carg02939	CsaV3_3G047130	Cucumber (Chinese Long) v3	carcucB0666
Carg02939	Cla97C05G108720	Watermelon (97103) v2	carwmbB0661
Carg02939	Cla97C08G155860	Watermelon (97103) v2	carwmbB0666
Carg02939	Bhi04G000878	Wax gourd	carwgoB0748
Carg02939	Bhi09G002013	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02939	Carg08308	Silver-seed gourd	carcarB067
Carg02939	Carg21174	Silver-seed gourd	carcarB511

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02939	Silver-seed gourd	carcarB558
Carg02939	Cucumber (Gy14) v2	carcgybB0630
Carg02939	Cucurbita maxima (Rimu)	carcmaB0893
Carg02939	Cucurbita moschata (Rifu)	carcmoB0869
Carg02939	Cucurbita pepo (Zucchini)	carcpeB0908