Carg02904 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02904
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	stress response protein NST1-like
Location	Cucurbita_argyrosperma_scaffold_008 : 709546 .. 712972 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTACGTTATCGTCTCCTCTGTGTTGCCCTACACTACTCCTCTTCTCATCTTCGTTTAACGTATAATCCTCCGATTTCTCTTCAATTTCTATCATAAAACTTACCAAATCCTCAATTTCCATCCATCTATTACTTTTATTTGTAATCTTTCATCATCAACTTGTGCAGAACCCGAAACCCTAATTTTCTGTTGCCTCACCCTCAAATCTGTCGCAAATCTTTGATCTATCAATCCAGAAATTTGCATCTGTTTTGTTTTTTGTTGTCAAGAATTTTGTTGGCGATTTATTGATTCATATTTTCAATCAATCTTTGTCGGACCTACTTGGGCGTTGTCTGATTTCAGTTCGCTGCCCGGAGATTCGGCTTTCGCCAATAAAATTCTTGGTGGAATTCCTGAACTTCGAGGAATTTTAGTAATCTGGCTTCTGTTTTTACGATTTCATTGTTTTTGCGTCGCTTTGGTTGATCTGTTTTATTTCTGAAAATGGTCGGTGGTGGAAGCAGGAGGGACGAGGGTTCTTTGGTTATCAACAACACCAACGTTTTTGCAGCCCTTGAGACTCTCAGGAAGAAGAAGAAGTCTGACAAGGAACGCAAGAATAAAGGGTCGTCTAAGTCTCAGTCCGCCCAGCCTAAGGAACCCGAACCTCAGGTTTTTTGGGCACCAGCTCCATTAACTTCAAAATCCTGGGCTGATGTTGACGATGAAGATGATGACGATTACTATGCCACGACTGCTCCGCCACAGGCTGTGTGGGGCTCCTCGGAGGCTCATGAGAGCAAGGAGAGGCCGAACATTGTAGAGGTTGGATGACTTTATCTCGCGAACCTTACTGATATATTACTGACTTGTGTATCTGAATTTTGTTAGCTTATTCATATCCATGTTAATCTTTCGTTTTCTGGTTGGTTCTACGAGGAGGAAAGTACATTCAGACTTTTTAAACCATAAATTGGCCATGAGAACGATCCCCAGGATTATACTTTACCATTTTTATGTCTACCATTTAGATACTGCTTTTGGTGACGAGCCGTGTCAATAAGGCTCATAAGATATGCAGAGAACGATATGGAGTGGAAGGAACGAGCATAACATCCGTTACTTGAGTATTCCTTGCAGTTTGTCTCATGTTTCTGTTCATACTGAAATTGATTGAGTGGGTAGGCTGGCTAGAATGCACACTTTCCTTGATAATAGTCTAGGTAGATTATGTTGTTATGACAACTAATGGTGTAACAGTTGTTTTATCATTATTTGATAGCACTATTTATTGTGGTTGAGCCTTGAAATTTTATGCTTAGTAGTATGCATAGATGCAGAGGGCAGGCATTGAAATTCCCTACGTTCTATCTTGTTGAATAAAATATGTGAGAAATGTGCTCGTAAGCGTGTCCCAAAAATATTTTATTGTTTATTGCTGCGAAAATCCTTCTAAGTATGGGTATCTGGTTGCAGGAGAGTGAGAGTGATGATGACATCCTCGATGAAGTTGATTATGATCTTGAGGATGATCATGATCATGATCATGAGCATGAGCATGAACCAGAGGTTCTTGTGCATCCTGAGCCAGCTGTGAAGAAGGCTCCTGAAGCCTCTGTGGCACCAAAGGAGGCTGATAGGCAACTTTCCAAGAAGGAAAGGAAGAAGAAGGAACTTGCTGAACTTGATGCCCTTTTGGCTGATTTTGGAGTAAGCCAGAAAGACAGCAACAGTCAAGATGAGTCTCGTGGTAATACAATTTTTGTTGTTTCAAACCTTATGATGTCATTTTTGTTTCCCTCCTACCTGTCTTGCCTGTTAATCGCTCTAAAAGTTTAGCTGTACTCCACGTATGCTCGTGAAAGTTTTGTTTTAGTTTGCAACAAGAATGTCTTCTTTGTTCATATATCATATTCTTGGTAACTGTGAACAGATGTAGGTCTGAAGCCCTACAAATATCTCGACCGAATTGAGGCATTGTTAACACCTTGTTTGTCTACCATTGACAGCTAACTGCTGCATTTGTACCTATTGTGATGATGGATTCACGTTTGGGAGTGTGAATACCCTTCCTAGTCATTGCGTTGGATGGTTGTGAATTTGTCCTGCTTTGGTCTTCTTCAATCTTGTTATTAATTATTCATACATTGGACTTTTTTTTATGGATCTTCAATATATAGGCTAAGATATATGATTAATTGTGGGTTCTTTACAAACAAAGGAGGTTGCAGACCTTGTCTGAAGAAGGCTTTTGTTGTTTGTTTTATTTGGCATTTTCAGATGTGCAAGAAAAAAGAGATGGAGAATCCAATGGAGATGGGGAAAAGAAGGAAAATGCCCCTTCGGAGTCGAAAAGTGCCAAGAAGAAGAAAAGGAAGGAAAAGAAAGAGGTTAAAGATCAGGATCAGCGAAACAGTTCCGATGTTAACACGGGGACAGATGAACTTGCTGGCAATGACGATGCGGAGGAAGACACATCGGCAGTTGATGTGAAGGAGCGTCTCAAGAAGGTGACATCCATGAAGAAGAAGAAATCTAGCAAAGAGATGGACTCTGCTGCCAAAGCTGCTGCCGTTGAGGCTGCAGCAAGGAGCGCGAGACTTGCAGCAGCGAAAAAGAAAGATAAGAACCATTACAACCAACAGCCCGTGCGGTAAACAACGACCTTGTTTTCCTTTTTTTTCCGTCTATAACGGGACATACGTTTCTCATTGTTTGTATAAGCAATGCAGAATAATCTCTCTGGGCTCTCAAATCTGGTTTTGTGGACAGTGGCAATTAGTTGTATTAAAATGGATTGGGGGAATTTTCACCTTTTTCTTTTGTGGATCCCTTGTTGTTCATCGTTTTAGTCTCCAACTGTGTTCTTGCATGTTTGCTGTTTAAAACTTTTGGCTGTAGGTGCATCTGAAAATATGCAAAATGAAGCTACAGAAACTGTGATTGCTTCTCCCTAACTCTGCCACCTTGATGAGAAGTAAGAAATAAGAACAGAGCTCAAGAATATATTATTGTGATTGTGTTGCCATCTGAATTCATTGTTGAATACACTGTGTGATCTTATTCTGTCTCTTTAGGTACTTAGTTTACAATCTTATCCACATGAAGCAATTGTTGATTATTTAGTATCACAGGTGGGATTCATTGTGTTGTTTTTATGTTGTCAATTGCCTTATAGTATGTTCAAATCATTAGTTGCTGCTGTGTTGTTGGAGGCTAGAAGGCTGCTATGGTAAATCATTTTTAGGTAACATCCACCAACCGAGATAACCGATGACCTCTCGTGTGCTTTTAACTATAACCGGATCAAGAGATTTGAGAGATTCAGATCAATAGATCATGGTAGTAGATTACTTTCGAATCATTCATAACATTTTAGGTTCGTTACTAAATCCAACATATTAGTTGGAAACATTATACCATTTGGTAAGAATTAATTTC

mRNA sequence

TCCATTACGTTATCGTCTCCTCTGTGTTGCCCTACACTACTCCTCTTCTCATCTTCGTTTAACGTATAATCCTCCGATTTCTCTTCAATTTCTATCATAAAACTTACCAAATCCTCAATTTCCATCCATCTATTACTTTTATTTGTAATCTTTCATCATCAACTTGTGCAGAACCCGAAACCCTAATTTTCTGTTGCCTCACCCTCAAATCTGTCGCAAATCTTTGATCTATCAATCCAGAAATTTGCATCTGTTTTGTTTTTTGTTGTCAAGAATTTTGTTGGCGATTTATTGATTCATATTTTCAATCAATCTTTGTCGGACCTACTTGGGCGTTGTCTGATTTCAGTTCGCTGCCCGGAGATTCGGCTTTCGCCAATAAAATTCTTGGTGGAATTCCTGAACTTCGAGGAATTTTAGTAATCTGGCTTCTGTTTTTACGATTTCATTGTTTTTGCGTCGCTTTGGTTGATCTGTTTTATTTCTGAAAATGGTCGGTGGTGGAAGCAGGAGGGACGAGGGTTCTTTGGTTATCAACAACACCAACGTTTTTGCAGCCCTTGAGACTCTCAGGAAGAAGAAGAAGTCTGACAAGGAACGCAAGAATAAAGGGTCGTCTAAGTCTCAGTCCGCCCAGCCTAAGGAACCCGAACCTCAGGTTTTTTGGGCACCAGCTCCATTAACTTCAAAATCCTGGGCTGATGTTGACGATGAAGATGATGACGATTACTATGCCACGACTGCTCCGCCACAGGCTGTGTGGGGCTCCTCGGAGGCTCATGAGAGCAAGGAGAGGCCGAACATTGTAGAGGAGAGTGAGAGTGATGATGACATCCTCGATGAAGTTGATTATGATCTTGAGGATGATCATGATCATGATCATGAGCATGAGCATGAACCAGAGGTTCTTGTGCATCCTGAGCCAGCTGTGAAGAAGGCTCCTGAAGCCTCTGTGGCACCAAAGGAGGCTGATAGGCAACTTTCCAAGAAGGAAAGGAAGAAGAAGGAACTTGCTGAACTTGATGCCCTTTTGGCTGATTTTGGAGTAAGCCAGAAAGACAGCAACAGTCAAGATGAGTCTCGTGATGTGCAAGAAAAAAGAGATGGAGAATCCAATGGAGATGGGGAAAAGAAGGAAAATGCCCCTTCGGAGTCGAAAAGTGCCAAGAAGAAGAAAAGGAAGGAAAAGAAAGAGGTTAAAGATCAGGATCAGCGAAACAGTTCCGATGTTAACACGGGGACAGATGAACTTGCTGGCAATGACGATGCGGAGGAAGACACATCGGCAGTTGATGTGAAGGAGCGTCTCAAGAAGGTGACATCCATGAAGAAGAAGAAATCTAGCAAAGAGATGGACTCTGCTGCCAAAGCTGCTGCCGTTGAGGCTGCAGCAAGGAGCGCGAGACTTGCAGCAGCGAAAAAGAAAGATAAGAACCATTACAACCAACAGCCCGTGCGGTAAACAACGACCTTGTTTTCCTTTTTTTTCCGTCTATAACGGGACATACGTTTCTCATTGTTTGTATAAGCAATGCAGAATAATCTCTCTGGGCTCTCAAATCTGGTTTTGTGGACAGTGGCAATTAGTTGTATTAAAATGGATTGGGGGAATTTTCACCTTTTTCTTTTGTGGATCCCTTGTTGTTCATCGTTTTAGTCTCCAACTGTGTTCTTGCATGTTTGCTGTTTAAAACTTTTGGCTGTAGGTGCATCTGAAAATATGCAAAATGAAGCTACAGAAACTGTGATTGCTTCTCCCTAACTCTGCCACCTTGATGAGAAGTAAGAAATAAGAACAGAGCTCAAGAATATATTATTGTGATTGTGTTGCCATCTGAATTCATTGTTGAATACACTGTGTGATCTTATTCTGTCTCTTTAGGTACTTAGTTTACAATCTTATCCACATGAAGCAATTGTTGATTATTTAGTATCACAGGTGGGATTCATTGTGTTGTTTTTATGTTGTCAATTGCCTTATAGTATGTTCAAATCATTAGTTGCTGCTGTGTTGTTGGAGGCTAGAAGGCTGCTATGGTAAATCATTTTTAGGTAACATCCACCAACCGAGATAACCGATGACCTCTCGTGTGCTTTTAACTATAACCGGATCAAGAGATTTGAGAGATTCAGATCAATAGATCATGGTAGTAGATTACTTTCGAATCATTCATAACATTTTAGGTTCGTTACTAAATCCAACATATTAGTTGGAAACATTATACCATTTGGTAAGAATTAATTTC

Coding sequence (CDS)

ATGGTCGGTGGTGGAAGCAGGAGGGACGAGGGTTCTTTGGTTATCAACAACACCAACGTTTTTGCAGCCCTTGAGACTCTCAGGAAGAAGAAGAAGTCTGACAAGGAACGCAAGAATAAAGGGTCGTCTAAGTCTCAGTCCGCCCAGCCTAAGGAACCCGAACCTCAGGTTTTTTGGGCACCAGCTCCATTAACTTCAAAATCCTGGGCTGATGTTGACGATGAAGATGATGACGATTACTATGCCACGACTGCTCCGCCACAGGCTGTGTGGGGCTCCTCGGAGGCTCATGAGAGCAAGGAGAGGCCGAACATTGTAGAGGAGAGTGAGAGTGATGATGACATCCTCGATGAAGTTGATTATGATCTTGAGGATGATCATGATCATGATCATGAGCATGAGCATGAACCAGAGGTTCTTGTGCATCCTGAGCCAGCTGTGAAGAAGGCTCCTGAAGCCTCTGTGGCACCAAAGGAGGCTGATAGGCAACTTTCCAAGAAGGAAAGGAAGAAGAAGGAACTTGCTGAACTTGATGCCCTTTTGGCTGATTTTGGAGTAAGCCAGAAAGACAGCAACAGTCAAGATGAGTCTCGTGATGTGCAAGAAAAAAGAGATGGAGAATCCAATGGAGATGGGGAAAAGAAGGAAAATGCCCCTTCGGAGTCGAAAAGTGCCAAGAAGAAGAAAAGGAAGGAAAAGAAAGAGGTTAAAGATCAGGATCAGCGAAACAGTTCCGATGTTAACACGGGGACAGATGAACTTGCTGGCAATGACGATGCGGAGGAAGACACATCGGCAGTTGATGTGAAGGAGCGTCTCAAGAAGGTGACATCCATGAAGAAGAAGAAATCTAGCAAAGAGATGGACTCTGCTGCCAAAGCTGCTGCCGTTGAGGCTGCAGCAAGGAGCGCGAGACTTGCAGCAGCGAAAAAGAAAGATAAGAACCATTACAACCAACAGCCCGTGCGGTAA

Protein sequence

MVGGGSRRDEGSLVINNTNVFAALETLRKKKKSDKERKNKGSSKSQSAQPKEPEPQVFWAPAPLTSKSWADVDDEDDDDYYATTAPPQAVWGSSEAHESKERPNIVEESESDDDILDEVDYDLEDDHDHDHEHEHEPEVLVHPEPAVKKAPEASVAPKEADRQLSKKERKKKELAELDALLADFGVSQKDSNSQDESRDVQEKRDGESNGDGEKKENAPSESKSAKKKKRKEKKEVKDQDQRNSSDVNTGTDELAGNDDAEEDTSAVDVKERLKKVTSMKKKKSSKEMDSAAKAAAVEAAARSARLAAAKKKDKNHYNQQPVR

Homology

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BLAST of Carg02904 vs. NCBI nr
Match: XP_023535762.1 (nucleolin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESE XX ILDEVX
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESESXXDILDEVX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180

Query: 181 LADFGVSQKDSN 193
           LADFGVSQKDSN
Sbjct: 181 LADFGVSQKDSN 192

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BLAST of Carg02904 vs. NCBI nr
Match: XP_022976181.1 (nucleolin [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 5.5e-46
Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEV- 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEV 
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120

Query: 121 -XXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELD 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELD
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELD 180

Query: 181 ALLADFGVSQKDSN 193
           ALLADFGVSQKDSN
Sbjct: 181 ALLADFGVSQKDSN 194

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BLAST of Carg02904 vs. NCBI nr
Match: XP_022936745.1 (nucleolin [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRK XXXXXXXXXXXXXXXXXXXXXXXXXX FWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRK-XXXXXXXXXXXXXXXXXXXXXXXXXXVFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXX VWGSSEAHESKERPNIVEESEXXXXILDEVX
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXXVWGSSEAHESKERPNIVEESEXXXXILDEVX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180

Query: 181 LADFGVSQKDSN 193
           LADFGVSQKDSN
Sbjct: 181 LADFGVSQKDSN 191

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BLAST of Carg02904 vs. NCBI nr
Match: XP_022981176.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 170/191 (89.01%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 4   GGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWAPAP 63
           GGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXX    FWAPAP
Sbjct: 3   GGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXEPQVFWAPAP 62

Query: 64  LTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDE--VXX 123
           LTSKSWADV XXXXXXXXXXXXXX AVWGSS+AH SKE+   VEESE    ILDE   XX
Sbjct: 63  LTSKSWADVDXXXXXXXXXXXXXXQAVWGSSDAHGSKEKLGNVEESESDDDILDEXXXXX 122

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDALL 183
           XXXXXXXXXXXXXXXXXXXXXXXXAVK APEASVAPKEA+RQLSKKERKKKELAELDALL
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXAVKNAPEASVAPKEAERQLSKKERKKKELAELDALL 182

Query: 184 ADFGVSQKDSN 193
           ADFGVSQKDSN
Sbjct: 183 ADFGVSQKDSN 193

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BLAST of Carg02904 vs. NCBI nr
Match: XP_008466364.1 (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 8.0e-37
Identity = 177/194 (91.24%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPN--IVEESEXXXXILDE 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERP+        XXXX    
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPSNAXXXXXXXXXXXXXX 120

Query: 121 VXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELD 180
            XXXXXXXXXXXXXXXXXXXXXXXXXX VKK PEASVAPKEA+RQLSKKERKKKELAELD
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKVPEASVAPKEAERQLSKKERKKKELAELD 180

Query: 181 ALLADFGVSQKDSN 193
           ALLADFGVSQKDSN
Sbjct: 181 ALLADFGVSQKDSN 194

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BLAST of Carg02904 vs. TAIR10
Match: AT4G32610.1 (copper ion binding)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 123/192 (64.06%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGG+RRDEGS+ I NTN+FAAL+T RK  XXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 1   MVGGGNRRDEGSMPIQNTNLFAALDTSRKKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120
                       XXXXXXXX        ++W +SEA  S  +      +EXXXX     X
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXYATTAPPQSLWSTSEASHSDAKD---VPAEXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180
           XXXXXXXXXXXXXXXXXXXXXXXXX   KAPE    PKEA+RQLSKKE    ELAEL+AL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPEVRAPPKEAERQLSKKEXXXXELAELEAL 180

Query: 181 LADFGVSQKDSN 193
           LADFGV+ KD N
Sbjct: 181 LADFGVATKDEN 189

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BLAST of Carg02904 vs. TAIR10
Match: AT2G25670.1 (BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1))

HSP 1 Score: 42.7 bits (99), Expect = 4.9e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 1  MVGGGSRRDEGSLVINNTNVFAALET 27
          M GGG+RRDEGS+ I +TN+FAAL+T
Sbjct: 1  MAGGGNRRDEGSITIQSTNLFAALDT 26

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BLAST of Carg02904 vs. TrEMBL
Match: tr|A0A1S3CSE1|A0A1S3CSE1_CUCME (stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103503794 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 5.3e-37
Identity = 177/194 (91.24%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPN--IVEESEXXXXILDE 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERP+        XXXX    
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPSNAXXXXXXXXXXXXXX 120

Query: 121 VXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELD 180
            XXXXXXXXXXXXXXXXXXXXXXXXXX VKK PEASVAPKEA+RQLSKKERKKKELAELD
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKVPEASVAPKEAERQLSKKERKKKELAELD 180

Query: 181 ALLADFGVSQKDSN 193
           ALLADFGVSQKDSN
Sbjct: 181 ALLADFGVSQKDSN 194

[Close]

BLAST of Carg02904 vs. TrEMBL
Match: tr|A0A0A0LDR4|A0A0A0LDR4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G879480 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 169/190 (88.95%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA
Sbjct: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120
           PAPLTSKSWADVXXXXXXXXXXXXXXXX  WGSSE  ESKERP+ VEES XXX ILD  X
Sbjct: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXXXWGSSEPQESKERPSNVEESXXXXDILDXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180
           XXXXXXXXXXXXXXXXXXXXXXXXX          APKEA+RQLSKKERKKKELAELDAL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPKEAERQLSKKERKKKELAELDAL 180

Query: 181 LADFGVSQKD 191
           LADFGVSQKD
Sbjct: 181 LADFGVSQKD 190

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BLAST of Carg02904 vs. TrEMBL
Match: tr|A0A2R6QZI0|A0A2R6QZI0_ACTCH (Mitochondrial glycoprotein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12485 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 144/189 (76.19%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWA 60
           MVGGG+RRDEGSL INNTNVFAALETLRK    XXXXXXXXXXXXXXXXXXXX    FWA
Sbjct: 1   MVGGGNRRDEGSLAINNTNVFAALETLRKKKKSXXXXXXXXXXXXXXXXXXXXEPQVFWA 60

Query: 61  PAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXXILDEVX 120
           P PLT+KSWADV XXXXXXXXXXXXXXX+VW  SE+ ++KE+   VEESE    +L    
Sbjct: 61  PTPLTTKSWADVDXXXXXXXXXXXXXXXSVWHLSESDQTKEKQAPVEESESEEDLL---- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKELAELDAL 180
             XXXXXXXXXXXXXXXXXXXXXXX V+  PE S APKE +RQLSKKERKKKELAEL+AL
Sbjct: 121 --XXXXXXXXXXXXXXXXXXXXXXXVVRNVPEVSSAPKETERQLSKKERKKKELAELEAL 180

Query: 181 LADFGVSQK 190
           LADFGVS K
Sbjct: 181 LADFGVSPK 183

[Close]

BLAST of Carg02904 vs. TrEMBL
Match: tr|A0A251JEY4|A0A251JEY4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068500 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.5e-27
Identity = 158/198 (79.80%), Postives = 165/198 (83.33%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLR------KXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVGGG RRDEGSLVINN NVFAALETLR       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVGGG-RRDEGSLVINNNNVFAALETLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXFWAPAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXX 120
           XXX      L +KSWADVXXXXXXXXXXXXXXX  VWGSSEAH+S +RP+ +EESEXXXX
Sbjct: 61  XXXXXXXXXLNAKSWADVXXXXXXXXXXXXXXXQVVWGSSEAHQSDDRPSNIEESEXXXX 120

Query: 121 ILDEVXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKEL 180
           ILD    XXXXXXXXXXXXXXXXXXXXX    VKK PE S  PKE +RQLSKKERKKKEL
Sbjct: 121 ILD----XXXXXXXXXXXXXXXXXXXXXPEPGVKKVPEVSAVPKETERQLSKKERKKKEL 180

Query: 181 AELDALLADFGVSQKDSN 193
           AEL+ALLADFGVSQKDSN
Sbjct: 181 AELEALLADFGVSQKDSN 193

[Close]

BLAST of Carg02904 vs. TrEMBL
Match: tr|A0A251IZ58|A0A251IZ58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068500 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.5e-27
Identity = 158/198 (79.80%), Postives = 165/198 (83.33%), Query Frame = 0


Query: 1   MVGGGSRRDEGSLVINNTNVFAALETLR------KXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVGGG RRDEGSLVINN NVFAALETLR       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVGGG-RRDEGSLVINNNNVFAALETLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXFWAPAPLTSKSWADVXXXXXXXXXXXXXXXXAVWGSSEAHESKERPNIVEESEXXXX 120
           XXX      L +KSWADVXXXXXXXXXXXXXXX  VWGSSEAH+S +RP+ +EESEXXXX
Sbjct: 61  XXXXXXXXXLNAKSWADVXXXXXXXXXXXXXXXQVVWGSSEAHQSDDRPSNIEESEXXXX 120

Query: 121 ILDEVXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKAPEASVAPKEADRQLSKKERKKKEL 180
           ILD    XXXXXXXXXXXXXXXXXXXXX    VKK PE S  PKE +RQLSKKERKKKEL
Sbjct: 121 ILD----XXXXXXXXXXXXXXXXXXXXXPEPGVKKVPEVSAVPKETERQLSKKERKKKEL 180

Query: 181 AELDALLADFGVSQKDSN 193
           AEL+ALLADFGVSQKDSN
Sbjct: 181 AELEALLADFGVSQKDSN 193

The following BLAST results are available for this feature:

BLAST of Carg02904 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535762.1	1.7e-47	98.96	nucleolin [Cucurbita pepo subsp. pepo]	[more]
XP_022976181.1	5.5e-46	98.97	nucleolin [Cucurbita maxima]	[more]
XP_022936745.1	1.2e-45	98.44	nucleolin [Cucurbita moschata]	[more]
XP_022981176.1	1.5e-38	89.01	nucleolin-like [Cucurbita maxima]	[more]
XP_008466364.1	8.0e-37	91.24	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]

BLAST of Carg02904 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32610.1	1.3e-12	64.06	copper ion binding	[more]
AT2G25670.1	4.9e-04	69.23	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1...	[more]

BLAST of Carg02904 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02904 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSE1\|A0A1S3CSE1_CUCME	5.3e-37	91.24	stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103503794 PE=4 S...	[more]
tr\|A0A0A0LDR4\|A0A0A0LDR4_CUCSA	1.6e-33	88.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G879480 PE=4 SV=1	[more]
tr\|A0A2R6QZI0\|A0A2R6QZI0_ACTCH	1.5e-28	76.19	Mitochondrial glycoprotein OS=Actinidia chinensis var. chinensis OX=1590841 GN=C...	[more]
tr\|A0A251JEY4\|A0A251JEY4_MANES	6.5e-27	79.80	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068500 PE=4 SV=...	[more]
tr\|A0A251IZ58\|A0A251IZ58_MANES	6.5e-27	79.80	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068500 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02904-RA	Carg02904-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 160..180
None	No IPR available	COILS	Coil	Coil	coord: 222..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..323
None	No IPR available	PANTHER	PTHR31365	FAMILY NOT NAMED	coord: 1..323
None	No IPR available	PANTHER	PTHR31365:SF5	COPPER ION BINDING PROTEIN-RELATED	coord: 1..323

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02904	Cla020941	Watermelon (97103) v1	carwmB0630
Carg02904	Csa3G879480	Cucumber (Chinese Long) v2	carcuB0655
Carg02904	MELO3C003665	Melon (DHL92) v3.5.1	carmeB0631
Carg02904	ClCG05G017230	Watermelon (Charleston Gray)	carwcgB0613
Carg02904	CSPI03G44270	Wild cucumber (PI 183967)	carcpiB0665
Carg02904	Cucsa.310660	Cucumber (Gy14) v1	carcgyB0712
Carg02904	CmaCh01G015310	Cucurbita maxima (Rimu)	carcmaB0894
Carg02904	CmaCh09G004830	Cucurbita maxima (Rimu)	carcmaB0889
Carg02904	CmoCh01G015820	Cucurbita moschata (Rifu)	carcmoB0870
Carg02904	CmoCh09G004880	Cucurbita moschata (Rifu)	carcmoB0865
Carg02904	Lsi04G021600	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02904	Cp4.1LG02g04460	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02904	Cp4.1LG06g03710	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02904	CsGy3G041750	Cucumber (Gy14) v2	carcgybB0632
Carg02904	MELO3C003665.2	Melon (DHL92) v3.6.1	carmedB0640
Carg02904	CsaV3_3G046710	Cucumber (Chinese Long) v3	carcucB0666
Carg02904	Cla97C05G098400	Watermelon (97103) v2	carwmbB0659
Carg02904	Bhi09G001963	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02904	Carg00481	Silver-seed gourd	carcarB553

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02904	Cucurbita maxima (Rimu)	carcmaB0893
Carg02904	Cucurbita moschata (Rifu)	carcmoB0869
Carg02904	Cucurbita pepo (Zucchini)	carcpeB0896
Carg02904	Cucurbita pepo (Zucchini)	carcpeB0908
Carg02904	Wild cucumber (PI 183967)	carcpiB0664
Carg02904	Cucumber (Chinese Long) v2	carcuB0653
Carg02904	Cucumber (Chinese Long) v3	carcucB0664
Carg02904	Bottle gourd (USVL1VR-Ls)	carlsiB581
Carg02904	Melon (DHL92) v3.5.1	carmeB0628
Carg02904	Melon (DHL92) v3.6.1	carmedB0638
Carg02904	Watermelon (Charleston Gray)	carwcgB0619
Carg02904	Watermelon (97103) v1	carwmB0628
Carg02904	Watermelon (97103) v2	carwmbB0666
Carg02904	Wax gourd	carwgoB0748
Carg02904	Silver-seed gourd	carcarB067
Carg02904	Silver-seed gourd	carcarB558
Carg02904	Cucumber (Gy14) v2	carcgybB0630
Carg02904	Cucumber (Gy14) v1	carcgyB0708