Carg02862 (gene) Silver-seed gourd

Overview
NameCarg02862
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_008 : 457892 .. 462070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTCTCTTGTCGAATCAAACGCTTTGGAAAAACCTTTCTGGAATCCATCTTCGTCTCGAAGAAAGCGATCACTGATTCTTCATCGAAAAGACTTGCTCGGATCGTCCTCGATCAATGTTCGCTGATTCTCTCTGTTTCTCTGCGGTTTATCGATGCCTTTCGGCTTGCGGTACGATTCTTCTTCGTGTACATTGCTGGAATACGATCCTCGATCTATGTAATTACCTATTCGATGTCGTTTTACATTTAGGAATCCGTTTTTGGAATTTCTGAAATTGTTTATTGTGTTCTACTCTAAATGCTTCTTCTTCTTCTCAATATTTTTGTTTGTTTTTTTATACTTGCATTGGTTTTCTAGTTAGACATTGTTGTCATATTCAGTACAGTGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTTATCATTTGTGTTTTCTTCCTCGCTATTTATGGCGTCTATTTTCGTCTTCTTGATTCGGACTGTGTTCCGGATCGAGGAATCTGTAATACCAGAATGTGACTACCTATTCGATGTCATTTTACATTTAGGAATCCGATTTTGGAATTTCTGAAATTGTTGACTGTGTTCTACTCTCAATGCTTCTTCTTCTCTATATTTTTGTTTGTTTTTGATGCATGATGCTTGAATCAGTAGGTTTTGCTTTACTGAGGTGGAAGAATGGTTTTAGAAGTGTTAAGTGATGGATTACTACTCGCATTGCTTTTCTAGTTAGACATTGTTGTAATAAGCAGTACAGCGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTTCTCGTTTGTTTTTTCTTCCTCGCTATTTATGGCGTCCATTTTCGTCTTCTTGATTCGGACTGTGTTCCGGATCGAGGAATCTGTAATACCAGAATGTGACTACCTATTCGATGTCAATTTACATTTAGGAATCCGTTTTTGGAATTTCTGAAACTTTCGACTGTGTTCTACTCTCCATGCTTCTTCTTCTCTATGTTTGCTTTTGATGCTTGAATCGGTAGGTTTTGCTTTACTGAGGTGGAAGAATGGTTTTAGAAGTTTTAAGTGATGGATTACTACTCGCATTGCTTTTCTAGTTAGACATCGTTGTCATATGCAGTACAGTGGTGAAGGATCCTCTACGGTGTCGGAGCCGACAGTTGAAATAGGTTCGCGTTTGTTTTTTCTTCCTTGCTATTTATGGCGTCTATTTTCGTCTTCTTGATTAGGACTGTGTTCCGGATCGACGAATCTGTAATACCAGAATGTGCATGACTGAGAATGATGATTGATCGGCTCCTTCGTATTTGTCTTATGGATAATGTGTTTTCCTTTAGGTCTTGAGTAGTGTCTTGTTCGTATGACGTGTCTCCCTGTGAATTAGTTGTGGCACTGGAGCTTGGATGCCTCTATTGCCCTCTGACTGCTTTACGTTGATCTGACCCTTTTTGGTCATGCAGTTAGCTCGCCGTGTGTAAAGCTATGGAGAATCTACCGAACTATCAATATGCGTGTTTTTTTTATGGTTGGGAGCTATCATGTTTTGATGTCGTGCATTTCCAATTACAGTCCAAGCTGTTTTAATTGACTTTAGATCTCTTTGGTTCTGTTTTGATATATGTTCAATTTTCTAAACTCAGATCAATAATTAGGCTGCACGCAAGAAATATTGATCATGTCTTTGAAATATTGCGATTTGGCTTGAAGTAAAACATACAACTATTCAAATATACTACTATATGATTGGTTGAAATTTATTTTACTTAAACCACGTTTCATTTTTCAAATTTTAAATGCTTCCTAGCCTTCTCTTGCATCCTGACCAGTTTCTGTTTTGTTTTGTCCTACATTCTCTTTTTTTGTTTTTTGTTTTTCAAGAATAATACTTACCTATTACTAGTTAGTAGTATACTTACCTACTACGCGTTTACAGTAGTAGTATACTTACCTACTACGCGTTTACCTTCTGTTTCTCTGCCTTTTGCATTACTCTCCTCTAATCAAACCGTAGTTAGTGAGTATTATTCATTTTTGTGTATCCAAGTATAGGTTATGAATTAGATATCGATTATCATCTAATGATTAATGATTCAATCTACGATTCTACCATTGTTAAACTTAAAAAATAAGAAGTACTTAGGATTTATATAGGTTAAAAAGATAATTATTAGTACCTTTGCACTGTAGCATATAACCTCACGTTGGTGCACGTAAAATGCGGATTTCTTATATTACTCTCTTCTCTCTTTAATTTGGATTGCAAGGTATTCTTATGTGCCCTTTTAGATGGACGGAGGTGATACCCGCCTTCCATGCCCGTGTACCAGCGGCGGATCCACATAGAGGTACGTGCTCTCCTTCAACTTCAAGAGTGTATAATATTAGTTTACCTTAGCTGATTCTTTAACAAGTTTAATGTTTGGTTTGTTGGAAATTATCCTATTCTACACTAGAGTACCCCTTACCTGATCCTTGCTTCGATTCCAATCATCAAGACATTTCCATTCTTTTTAAGTTTTCGCCTGGCTGCAGTCCCCTCAAATTAATTGTTATTTTATATGTTATCTTTTGTTTCAGCTTAGTTTTCATTACAAGTTCTTTGTTCGGTAGAAGAGGCTTAAATTACCTCATCGAGCTTCATTTCAAAATGAGAGAATTGCAATTTTTTTATTAAATTTTAATTTTCTAATTTTGCAGCACGTTTATTTTTATATTATATTTAAAAAAATATATGAATACTCTGTAAATTTTAGTTGATTACTGTCATCTTCAAACTTCAGGTTCATACTCGCTTCATTTTTTTAAAACTCAGATCAAGATTCTTTACAAGGATATTTGGTACAAACATTGGTTCTGGTTCTTCCGAATTTTAAGAGAACGATCGTTATCTTGTGTTTTACTGTAGTCTAGAACCCAGTGCATCCACTGCCAGAACTTTTTTTTGAACATTTTAAGACACCCTTTTTCAACCTGTGGACCAGCTCCATCGGTTGAGCATTAATTTCTGATCTGACTTGGTCTTTGATAAGAGAAGAGGGCATGGCTGTCGGTTCTTGAAACAACGCAAATATTTGCTTACACAGACCAATTATGTTGGCATGCATGATCTTATATTACTAGGCCACTCAAAGTTGATCTTTCGTTCAGGCTTTTGCTCTCTGTGGTTATGGAGGTCTAGTAAAGACCAGAGCATTAATAAGCCAAACAAGTTTAAGAAATCAAGTGAAAGCTTTCGAGATGGACAGAGCTTCTGTTTCCGAACGCACAACTGTGAGATCATTAAAAATCAATTTACTTGTTTCCTTTTCGGTATAAAAGAAAAGATATTCATTGAGCAAAACGAATATGAACAATGTGTTGGATGTTGCATGCGGTTCTGTTTATGTTAATAATTTAGAACATGAACTGGCTGATTCAAGTGTGACTGGTGCAGGTCTCATATCTCTACTTTGGACTCCTCAAATACGAAGTCAGTATGAAGAGTGGCTTCTACTTCAACATTGAAGGTCTTTTGAACAGGCAAACAAAAACGTAACGTGCCTCATGAACGTTGATTCGCATTAATGTCATGAAATCGGGTAAACTTCAACTTTCAATCTTTGCCATTAGAATTTTATTGTCGGTTGTGTGCGAAGTTCTAATAGTGGCAGTTAGTCCAGTTTGATTGTTACTCGAAGAAAAGAAAAAATGAGGAAACTCAACAATGAGTGTTCAAACTGGATAAACCGTCAATATTAGAACTACGAACACAACCCAAAATTATTCTAATGCCAGAGGTCGAAAGCCGAAGTTTACTTAGACAATAGGATGCTGGATGTTTCAAATGTAGGGCTTATTACTATTTTGATGTTGCACTTTCCTGATTTGGATTTTAATTCATTTTAAACCATGTATTTTTTGTACCGCAGCTGCAGGAATTTATGGACTTTTTCTAAACCAAATTTTGATGCTACCAGATTGCTCTAGTCATTCAACATTCGTTTTTAAGGTATATTTCCTTGTGTGAAAACTTCACAACTATTATTTTTCCATAGTTTGAATTTTTGAACTTTTGTTTTTCCGTTAGTTTTATAAATTTTAAATTTTAGACTCGCAAACAAGTATTTTTATTAGACACAAAATTAAAAAAACAAAAACTTTAAAAACTTTTTTTT

mRNA sequence

CTTTTTCTCTTGTCGAATCAAACGCTTTGGAAAAACCTTTCTGGAATCCATCTTCGTCTCGAAGAAAGCGATCACTGATTCTTCATCGAAAAGACTTGCTCGGATCGTCCTCGATCAATGTTCGCTGATTCTCTCTGTTTCTCTGCGGTTTATCGATGCCTTTCGGCTTGCGTACAGTGGTGAAGGATCCTCTACGGTGTCGGAGCCGACAGTTGAAATAGGTTCGCGTTTGTTTTTTCTTCCTTGCTATTTATGGCGTCTATTTTCGTCTTCTTGATTAGGACTGTGTTCCGGATCGACGAATCTGTAATACCAGAATGTGCATGACTGAGAATGATGATTGATCGGCTCCTTCGTATTTGTCTTATGGATAATGTGTTTTCCTTTAGGTCTTGAGTAGTGTCTTGTTCGTATGACGTGTCTCCCTGTGAATTAGTTGTGGCACTGGAGCTTGGATGCCTCTATTGCCCTCTGACTGCTTTACGTTGATCTGACCCTTTTTGGTCATGCAGTTAGCTCGCCGTGTGTAAAGCTATGGAGAATCTACCGAACTATCAATATGCGTGTTTTTTTTATGGTTGGGAGCTATCATGTTTTGATGTCGTGCATTTCCAATTACAGTCCAAGCTGTTTTAATTGACTTTAGATCTCTTTGGTTCTGTTTTGATATATGTTCAATTTTCTAAACTCAGATCAATAATTAGGCTGCACGCAAGAAATATTGATCATGTCTTTGAAATATTGCGATTTGGCTTGAAGTAAAACATACAACTATTCAAATATACTACTATATGATTGGTTGAAATTTATTTTACTTAAACCACGTTTCATTTTTCAAATTTTAAATGCTTCCTAGCCTTCTCTTGCATCCTGACCAGTTTCTGTTTTGTTTTGTCCTACATTCTCTTTTTTTGTTTTTTGTTTTTCAAGAATAATACTTACCTATTACTAGTTAGTAGTATACTTACCTACTACGCGTTTACAGTAGTAGTATACTTACCTACTACGCGTTTACCTTCTGTTTCTCTGCCTTTTGCATTACTCTCCTCTAATCAAACCGTAGTTAGTGAGTATTATTCATTTTTGTGTATCCAAGTATAGGTTATGAATTAGATATCGATTATCATCTAATGATTAATGATTCAATCTACGATTCTACCATTGTTAAACTTAAAAAATAAGAAGTACTTAGGATTTATATAGGTTAAAAAGATAATTATTAGTACCTTTGCACTGTAGCATATAACCTCACGTTGGTGCACGTAAAATGCGGATTTCTTATATTACTCTCTTCTCTCTTTAATTTGGATTGCAAGGTATTCTTATGTGCCCTTTTAGATGGACGGAGGTGATACCCGCCTTCCATGCCCGTGTACCAGCGGCGGATCCACATAGAGGCTTTTGCTCTCTGTGGTTATGGAGGTCTAGTAAAGACCAGAGCATTAATAAGCCAAACAAGTTTAAGAAATCAAGTGAAAGCTTTCGAGATGGACAGAGCTTCTGTTTCCGAACGCACAACTGTCTCATATCTCTACTTTGGACTCCTCAAATACGAAGTCAGTATGAAGAGTGGCTTCTACTTCAACATTGAAGGTCTTTTGAACAGGCAAACAAAAACGTAACGTGCCTCATGAACGTTGATTCGCATTAATGTCATGAAATCGGGTAAACTTCAACTTTCAATCTTTGCCATTAGAATTTTATTGTCGGTTGTGTGCGAAGTTCTAATAGTGGCAGTTAGTCCAGTTTGATTGTTACTCGAAGAAAAGAAAAAATGAGGAAACTCAACAATGAGTGTTCAAACTGGATAAACCGTCAATATTAGAACTACGAACACAACCCAAAATTATTCTAATGCCAGAGGTCGAAAGCCGAAGTTTACTTAGACAATAGGATGCTGGATGTTTCAAATCTGCAGGAATTTATGGACTTTTTCTAAACCAAATTTTGATGCTACCAGATTGCTCTAGTCATTCAACATTCGTTTTTAAGGTATATTTCCTTGTGTGAAAACTTCACAACTATTATTTTTCCATAGTTTGAATTTTTGAACTTTTGTTTTTCCGTTAGTTTTATAAATTTTAAATTTTAGACTCGCAAACAAGTATTTTTATTAGACACAAAATTAAAAAAACAAAAACTTTAAAAACTTTTTTTT

Coding sequence (CDS)

ATGCCCGTGTACCAGCGGCGGATCCACATAGAGGCTTTTGCTCTCTGTGGTTATGGAGGTCTAGTAAAGACCAGAGCATTAATAAGCCAAACAAGTTTAAGAAATCAAGTGAAAGCTTTCGAGATGGACAGAGCTTCTGTTTCCGAACGCACAACTGTCTCATATCTCTACTTTGGACTCCTCAAATACGAAGTCAGTATGAAGAGTGGCTTCTACTTCAACATTGAAGGTCTTTTGAACAGGCAAACAAAAACGTAA

Protein sequence

MPVYQRRIHIEAFALCGYGGLVKTRALISQTSLRNQVKAFEMDRASVSERTTVSYLYFGLLKYEVSMKSGFYFNIEGLLNRQTKT
Homology
[Close]
BLAST of Carg02862 vs. NCBI nr
Match: XP_022935926.1 (uncharacterized protein LOC111442687 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MPVYQRRIHIEAFALCGYGGLVKTRALISQTSLRNQVKAFEMDRASVSERTTVSYLYFGL 60
          MPVYQRRIHIEAFALCGYGG VKTRALISQTSLRNQVKAFEMD+ASVSERTTVSYLYFGL
Sbjct: 1  MPVYQRRIHIEAFALCGYGGRVKTRALISQTSLRNQVKAFEMDKASVSERTTVSYLYFGL 60

Query: 61 LKYEVSMKSGF-YFNIEGLLNRQTKT 86
          LK+EV MKSGF YFNIEGLLNRQTKT
Sbjct: 61 LKHEVIMKSGFYYFNIEGLLNRQTKT 86

[Close]
BLAST of Carg02862 vs. NCBI nr
Match: XP_022976222.1 (uncharacterized protein LOC111476677 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 9.8e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 42 MDRASVSERTTVSYLYFGLLKYEVSMKSGFYFNIEGLLNRQTK 85
          MD+ASVSER TVS LYFGLLK+EV MKSGFYFN+EGLLNRQTK
Sbjct: 1  MDKASVSERITVSILYFGLLKHEVIMKSGFYFNLEGLLNRQTK 43

The following BLAST results are available for this feature:
BLAST of Carg02862 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935926.12.0e-3594.19uncharacterized protein LOC111442687 [Cucurbita moschata][more]
XP_022976222.19.8e-1186.05uncharacterized protein LOC111476677 [Cucurbita maxima][more]
BLAST of Carg02862 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg02862 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg02862 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02862-RACarg02862-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02862CmoCh09G004360Cucurbita moschata (Rifu)carcmoB0865
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg02862Cucurbita pepo (Zucchini)carcpeB0897
Carg02862Silver-seed gourdcarcarB154
Carg02862Silver-seed gourdcarcarB163
Carg02862Silver-seed gourdcarcarB553
Carg02862Silver-seed gourdcarcarB558
Carg02862Cucumber (Gy14) v2carcgybB0631
Carg02862Cucumber (Gy14) v2carcgybB0633
Carg02862Cucumber (Gy14) v1carcgyB0709
Carg02862Cucumber (Gy14) v1carcgyB0710
Carg02862Cucurbita maxima (Rimu)carcmaB0889
Carg02862Cucurbita maxima (Rimu)carcmaB0890
Carg02862Cucurbita maxima (Rimu)carcmaB0891
Carg02862Cucurbita maxima (Rimu)carcmaB0893
Carg02862Cucurbita maxima (Rimu)carcmaB0894
Carg02862Cucurbita maxima (Rimu)carcmaB0901
Carg02862Cucurbita moschata (Rifu)carcmoB0866
Carg02862Cucurbita moschata (Rifu)carcmoB0867
Carg02862Cucurbita moschata (Rifu)carcmoB0869
Carg02862Cucurbita moschata (Rifu)carcmoB0870
Carg02862Cucurbita moschata (Rifu)carcmoB0878
Carg02862Cucurbita pepo (Zucchini)carcpeB0895
Carg02862Cucurbita pepo (Zucchini)carcpeB0904
Carg02862Cucurbita pepo (Zucchini)carcpeB0905
Carg02862Cucurbita pepo (Zucchini)carcpeB0906
Carg02862Cucurbita pepo (Zucchini)carcpeB0908
Carg02862Wild cucumber (PI 183967)carcpiB0663
Carg02862Wild cucumber (PI 183967)carcpiB0666
Carg02862Cucumber (Chinese Long) v2carcuB0654
Carg02862Cucumber (Chinese Long) v2carcuB0656
Carg02862Cucumber (Chinese Long) v3carcucB0665
Carg02862Cucumber (Chinese Long) v3carcucB0667
Carg02862Bottle gourd (USVL1VR-Ls)carlsiB573
Carg02862Bottle gourd (USVL1VR-Ls)carlsiB575
Carg02862Bottle gourd (USVL1VR-Ls)carlsiB578
Carg02862Bottle gourd (USVL1VR-Ls)carlsiB580
Carg02862Melon (DHL92) v3.5.1carmeB0629
Carg02862Melon (DHL92) v3.5.1carmeB0633
Carg02862Melon (DHL92) v3.6.1carmedB0637
Carg02862Melon (DHL92) v3.6.1carmedB0642
Carg02862Watermelon (Charleston Gray)carwcgB0618
Carg02862Watermelon (Charleston Gray)carwcgB0612
Carg02862Watermelon (Charleston Gray)carwcgB0613
Carg02862Watermelon (97103) v1carwmB0629
Carg02862Watermelon (97103) v1carwmB0630
Carg02862Watermelon (97103) v2carwmbB0658
Carg02862Watermelon (97103) v2carwmbB0659
Carg02862Watermelon (97103) v2carwmbB0665
Carg02862Wax gourdcarwgoB0750
Carg02862Wax gourdcarwgoB0754
Carg02862Wax gourdcarwgoB0756