Carg02726 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTAATCCACCAATTTGATTGTTGTTGGGGGCTTTCACGGGTGCGAAAACCAATTGGGCGGTCAACAGATTGAAGCATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGGTATGTATGTTTATACATTCACAAATCCCACTTGCATATCAATCTTGGATTCATCATTGTTTGTCTCTGTTTTGTAGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA GTTAATCCACCAATTTGATTGTTGTTGGGGGCTTTCACGGGTGCGAAAACCAATTGGGCGGTCAACAGATTGAAGCATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA ATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL
BLAST of Carg02726 vs. NCBI nr
Match: XP_022958273.1 (LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT1 [Cucurbita moschata]) HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38 Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_016903418.1 (PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 [Cucumis melo]) HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19 Identity = 60/107 (56.07%), Postives = 68/107 (63.55%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_022944693.1 (AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita moschata]) HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19 Identity = 62/123 (50.41%), Postives = 71/123 (57.72%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_022985835.1 (AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita maxima]) HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19 Identity = 62/123 (50.41%), Postives = 71/123 (57.72%), Query Frame = 0
BLAST of Carg02726 vs. NCBI nr
Match: XP_011653587.1 (PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 [Cucumis sativus] >KGN54165.1 hypothetical protein Csa_4G290800 [Cucumis sativus]) HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18 Identity = 59/107 (55.14%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Carg02726 vs. TAIR10
Match: AT3G20840.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09 Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of Carg02726 vs. TAIR10
Match: AT1G51190.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 53.9 bits (128), Expect = 9.5e-08 Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 0
BLAST of Carg02726 vs. Swiss-Prot
Match: sp|Q5YGP8|PLET1_ARATH (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08 Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of Carg02726 vs. Swiss-Prot
Match: sp|Q5YGP7|PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06 Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 0
BLAST of Carg02726 vs. TrEMBL
Match: tr|A0A1S4E5A7|A0A1S4E5A7_CUCME (AP2-like ethylene-responsive transcription factor PLT2 OS=Cucumis melo OX=3656 GN=LOC103503191 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19 Identity = 60/107 (56.07%), Postives = 68/107 (63.55%), Query Frame = 0
BLAST of Carg02726 vs. TrEMBL
Match: tr|A0A0A0KX09|A0A0A0KX09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290800 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18 Identity = 59/107 (55.14%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Carg02726 vs. TrEMBL
Match: tr|A0A2P5D907|A0A2P5D907_PARAD (AP2/ERF transcription factor OS=Parasponia andersonii OX=3476 GN=PanERF54 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 8.2e-14 Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Carg02726 vs. TrEMBL
Match: tr|A0A2P5EUK5|A0A2P5EUK5_9ROSA (AP2/ERF transcription factor OS=Trema orientalis OX=63057 GN=TorERF54 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13 Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Carg02726 vs. TrEMBL
Match: tr|A0A251L6D7|A0A251L6D7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G167000 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.0e-13 Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |