Carg02687 (gene) Silver-seed gourd

Overview
NameCarg02687
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_009 : 1305366 .. 1306080 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGACTTGTGGAGTTGTGGTGGTGGATCTTGTGGACTGTGGTCGGTTTGCGACGGACGGGATAATCTCAAAGGAACCACAAATTTTCAATGGACACCAACATTTTCTCGGGAAAATCCTCGACCTAGAATTTTCTCTCAGTTATCCTCTGGTTGGTTTCTCTTTCTACTTTGGCAGTGGACGGATTCCCTCGACTCTCTTCCTCACTCCGTGGATTCTGTGTGTAATTCTTCATCCTTCTTTATCCTTTTTCATTTACTTTTTGGCCATTAGGAATTTAATCTGTTTGGCTCTCGAGAATCTTTATCCTTTTTCATTTACCTTTTGTAATTTAATCTGTTTGGCTATCGAGAAAAGAGCGCAAGTTGAAGGCAAGTTTCCTTGTTAATTTTCCCCTATTTTGTCGCCCCAAACTGGACTGGAATTTGAATTTAACACATTTTACTTCAAAGCCTACTACCATTTTCCTGATTTCTCGAATTTTATTCTTGAATATGTTACCGTTCTTATGGATTCTTCGTCTGCATCGCGATAATTTGCTTTTAAGGTGTTGCGCTGTTTTCTCTTGTGATTTCTGTTCGGTTTTTTAACCTAGTGGTGACTGCAATAATATTGAAGGGGTTGACGATTTGACGTTGATAGTTGATGTTCTTATGATTGGCAGGTTTGTTATGGTGCGTATTTTATGTGATTTGGCCAAGAGTTCTTGA

mRNA sequence

ATGGCGATGACTTGTGGAGTTGTGGTGGTGGATCTTGTGGACTGTGGTCGGTTTGCGACGGACGGGATAATCTCAAAGGAACCACAAATTTTCAATGGACACCAACATTTTCTCGGGAAAATCCTCGACCTAGAATTTTCTCTCAGTTATCCTCTGGTTGGTTTCTCTTTCTACTTTGGCAGTGGACGGATTCCCTCGACTCTCTTCCTCACTCCGTGGATTCTGTTTGTTATGGTGCGTATTTTATGTGATTTGGCCAAGAGTTCTTGA

Coding sequence (CDS)

ATGGCGATGACTTGTGGAGTTGTGGTGGTGGATCTTGTGGACTGTGGTCGGTTTGCGACGGACGGGATAATCTCAAAGGAACCACAAATTTTCAATGGACACCAACATTTTCTCGGGAAAATCCTCGACCTAGAATTTTCTCTCAGTTATCCTCTGGTTGGTTTCTCTTTCTACTTTGGCAGTGGACGGATTCCCTCGACTCTCTTCCTCACTCCGTGGATTCTGTTTGTTATGGTGCGTATTTTATGTGATTTGGCCAAGAGTTCTTGA

Protein sequence

MAMTCGVVVVDLVDCGRFATDGIISKEPQIFNGHQHFLGKILDLEFSLSYPLVGFSFYFGSGRIPSTLFLTPWILFVMVRILCDLAKSS
Homology
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BLAST of Carg02687 vs. NCBI nr
Match: XP_022958678.1 (uncharacterized protein LOC111459833 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-22
Identity = 60/84 (71.43%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MAMTCGVVVVDLVDCGRFATDGIISKEPQIFNGHQHFLGKILDLEFSLSYPLVGFSFYF- 60
          MAMTCGVVVVDLVDCGRFATDGIISKEPQIFNGHQHFLGKILDLEFS SYPLVG      
Sbjct: 1  MAMTCGVVVVDLVDCGRFATDGIISKEPQIFNGHQHFLGKILDLEFSFSYPLVGSLSTLA 60

Query: 61 --GSGRIPSTL--FLTPWILFVMV 80
            G  R+ S+L  F   W +F ++
Sbjct: 61 VDGFPRLSSSLRGFCLLWCVFYVI 84

The following BLAST results are available for this feature:
BLAST of Carg02687 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958678.14.5e-2271.43uncharacterized protein LOC111459833 [Cucurbita moschata][more]
BLAST of Carg02687 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg02687 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg02687 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02687-RACarg02687-RAmRNA