Carg02542 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02542
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_009 : 518957 .. 521699 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGCGAAACCTAGAGAGAAAATTTCCAGTTTCCATTCATCCAAACAATATTTCGCCGGGAAGGAAGAGCGTTGTTCTTCAATTTATAATCGTTTTCCTTTTTTTTTTTTTTTTTTTTTGCTTTACTTTTGATTCTTCCTGACCTTTATACTCAGTGGAAAGTCGTACTCGCGCACGAAACCAAACCAACCATTCTTTCTCTTTCTACAGAGAAAGAAAAAAGAGAGGGAAGCTTTCTTGGCCTTCTCTGCTTTCCTGCCATAGTCTGAAGGGGAAGAAGAGGGCTTTGAAAAGGAGTACACATCCTGTGTCTCCCTTTTGTTCCATTTGAATTGAATTCTCAATCGCTTTTTTCGATTCTTACCAATCGATCGAGTTCTCGGCGTGAAACGGTAAGATTCTAGTTCCTGGACTATGTATCTCTTTTGCTTTCGAATTGGTTCTGATTATCGCTGCTTGATCAGAACCTCGTGTTGTGAGTTTTCTTTTTTTTTTTTTTTTGGTTGTTCTTATTGGTTCTGTGTAGCTGAGGTAATTTTTGGATTCTCTGTAGGTTAACTTCGATGTTTATTTTATCAGTTTTTGCTAGAGAATCCGAATTTTTCGGCTTCTTGTTACTTTGATGTTATCGTGTTATTGATTGAGTTCTTGATTGTATTGACTCCGGTCTGTCTATACTGGTTCTTTAGGATTACTTCGTTCCTCTTTTGCCACTTCTATGATTATTACATCATATTTGTTGCTAGCTTTGTTGATCTATGATTCTCACATCATATTATGTAATTTTATTTTATATCCTATTCACTAGCGAACTTTGGCATAGCTTCTAATGCAGTTAAATTGATTTGAGCATGTTTTCTTTACCAGGGTTAACATTCTCTAAAATTTTGAGGGCATATTGCAAGTAGTTCCAATGGATTTTTGGCGTGTTGTGTAGAAAAGAAAACTGAAATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATGTCAGTATTGAATTTTTCATTTGATGTTTATTGTCATATTTTTATCAATCAAATTCTTTCTTTGTTAGCAAAAACTATGCAGCCATTGTTCAGTGTTCGTTCATTTAATCATTGTCAACATGTCTAATTGCATATAGTTGTAGGTATTCCGATATAGCCTATGAGATAATTAACATAATTTTCATAGTTGGAGGCCCCAATCTGAAACTGGTTGCAGTGCGAGAGACGAAGTTTCTTTATTCAAGTACCTTTTGGTTAATTCAGCATCGTTGTGTTTTCCAAAAAAGTCTTCTGCCTTAGCATGTATCAACTTAGATTGCTTGTGATCATAGGAGATGCTTGTATACTACGCCGCGAGTAAATCGTGAATATGAGAAACGTTACATACACTCAAGACTGCCATTTCTGTTATTTATTCTTGGAGCTGATTGAATTTTATGCTCAACTGTTAACATGATAGTGGAAAGAATTTTCTTCCCATCATCAACTTCCTTGCTCAAATCTCAATTTACTTAAATCTATGTTTTGAACTTTTGCTGCAGTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCTTTGCCTATCCCATATGATGTTGTTTTAACACACCCACATACTCCTCCTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACCGCTCAGACTCCAAATACTGATGTAATTCAAGAAACAGCATGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGGTGAAGTTTTGCTAAACCTTAGTTAAGCTGCACAATACCAACTCACCAAACCGTGGATTTTTTTTTTCAAACCCCTCATCTCTATAGCCAATGTTTGACACTTTAATTGCTTGAACTAACAAGTCACCAGGTTACCGCTTTCTCAATGGCTGCACAGTTCCTTTCCCTTTCAATTCATCACTTTCCATTGTTTTATGCAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTCGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGTGTGTCTCGGGCTCTCAGTTTATATTTTATCGTTTGTCACTCATACTCATTAGTTCATAACGCTTTAAGAAGATTTTTTTTTCCCTCTCCTAATCATCTCCCCCTGAAATGCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTAACAACAAGAAAATCAGCCAAGTGTTTTCTCAGATTGAAGTAAAGTTGAAAGTATAGATTATGAAGTTCTTGTGATTTTGCTTCAGCTGGCAGCTTCAGGTTTCTTTTAGTTGCTTTCCCTTTTTTTTTTACTTAATGACTTGCTCATTCCCGTTGCATTTTCTCTGTGAATTTGTTCTCTGAACATAGAATGTGGGGAAAATTGGGAAAATGATTCTTCTTTCTTTTGTTTCTTTTTTATTTTGGGTGGGAGTAGTGGGAGAATGTAAATACAGTGTGTGCAATATAGTATATCTGAGCTTGGTTTTTTTT

mRNA sequence

GGCGGCGAAACCTAGAGAGAAAATTTCCAGTTTCCATTCATCCAAACAATATTTCGCCGGGAAGGAAGAGCGTTGTTCTTCAATTTATAATCGTTTTTTTGCTTTACTTTTGATTCTTCCTGACCTTTATACTCAGTGGAAAGTCGTACTCGCGCACGAAACCAAACCAACCATTCTTTCTCTTTCTACAGAGAAAGAAAAAAGAGAGGGAAGCTTTCTTGGCCTTCTCTGCTTTCCTGCCATAGTCTGAAGGGGAAGAAGAGGGCTTTGAAAAGGAGTACACATCCTGTGTCTCCCTTTTGTTCCATTTGAATTGAATTCTCAATCGCTTTTTTCGATTCTTACCAATCGATCGAGTTCTCGGCGTGAAACGGGTTAACATTCTCTAAAATTTTGAGGGCATATTGCAAGTAGTTCCAATGGATTTTTGGCGTGTTGTGTAGAAAAGAAAACTGAAATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCTTTGCCTATCCCATATGATGTTGTTTTAACACACCCACATACTCCTCCTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACCGCTCAGACTCCAAATACTGATGTAATTCAAGAAACAGCATGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTCGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTAACAACAAGAAAATCAGCCAAGTGTTTTCTCAGATTGAAGTAAAGTTGAAAGTATAGATTATGAAGTTCTTGTGATTTTGCTTCAGCTGGCAGCTTCAGGTTTCTTTTAGTTGCTTTCCCTTTTTTTTTTACTTAATGACTTGCTCATTCCCGTTGCATTTTCTCTGTGAATTTGTTCTCTGAACATAGAATGTGGGGAAAATTGGGAAAATGATTCTTCTTTCTTTTGTTTCTTTTTTATTTTGGGTGGGAGTAGTGGGAGAATGTAAATACAGTGTGTGCAATATAGTATATCTGAGCTTGGTTTTTTTT

Coding sequence (CDS)

ATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTCGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTAACAACAAGAAAATCAGCCAAGTGTTTTCTCAGATTGAAGTAAAGTTGAAAGTATAG

Protein sequence

MFVPSVWKNMMGRIQNSRQNASIIFISHAFWNGWKEVISVLCVIRKWFLALQLISNNKKISQVFSQIEVKLKV

Homology

[Close]

BLAST of Carg02542 vs. NCBI nr
Match: ACU17469.1 (unknown [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-07
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 10 MMGRIQNSRQNASIIFISHAFWNGWKEVISVLCVIRKWFLALQL 54
          MM RIQNS+QN +IIF   AFWNGWKEV   LC IR WF  L L
Sbjct: 1  MMQRIQNSQQNVTIIFTLRAFWNGWKEVRLALCAIRIWFSTLPL 44

[Close]

BLAST of Carg02542 vs. TrEMBL
Match: tr|C6T6M7|C6T6M7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 10 MMGRIQNSRQNASIIFISHAFWNGWKEVISVLCVIRKWFLALQL 54
          MM RIQNS+QN +IIF   AFWNGWKEV   LC IR WF  L L
Sbjct: 1  MMQRIQNSQQNVTIIFTLRAFWNGWKEVRLALCAIRIWFSTLPL 44

The following BLAST results are available for this feature:

BLAST of Carg02542 vs. NCBI nr


Match Name	E-value	Identity	Description
ACU17469.1	9.7e-07	65.91	unknown [Glycine max]	[more]

BLAST of Carg02542 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg02542 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02542 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|C6T6M7\|C6T6M7_SOYBN	6.4e-07	65.91	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02542-RA	Carg02542-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02542	Cp4.1LG13g01370	Cucurbita pepo (Zucchini)	carcpeB1271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02542	Wax gourd	carwgoB1059
Carg02542	Silver-seed gourd	carcarB643
Carg02542	Cucumber (Gy14) v2	carcgybB0912
Carg02542	Cucumber (Gy14) v2	carcgybB0917
Carg02542	Cucumber (Gy14) v1	carcgyB1038
Carg02542	Cucumber (Gy14) v1	carcgyB1043
Carg02542	Cucurbita maxima (Rimu)	carcmaB1261
Carg02542	Cucurbita maxima (Rimu)	carcmaB1268
Carg02542	Cucurbita moschata (Rifu)	carcmoB1230
Carg02542	Cucurbita moschata (Rifu)	carcmoB1237
Carg02542	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02542	Wild cucumber (PI 183967)	carcpiB0961
Carg02542	Wild cucumber (PI 183967)	carcpiB0966
Carg02542	Cucumber (Chinese Long) v2	carcuB0939
Carg02542	Cucumber (Chinese Long) v3	carcucB0963
Carg02542	Bottle gourd (USVL1VR-Ls)	carlsiB835
Carg02542	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02542	Melon (DHL92) v3.5.1	carmeB0903
Carg02542	Melon (DHL92) v3.5.1	carmeB0907
Carg02542	Melon (DHL92) v3.6.1	carmedB0910
Carg02542	Melon (DHL92) v3.6.1	carmedB0914
Carg02542	Watermelon (Charleston Gray)	carwcgB0898
Carg02542	Watermelon (Charleston Gray)	carwcgB0904
Carg02542	Watermelon (97103) v1	carwmB0922
Carg02542	Watermelon (97103) v1	carwmB0925
Carg02542	Watermelon (97103) v2	carwmbB0963
Carg02542	Watermelon (97103) v2	carwmbB0970