Carg02444 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02444
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Autophagy-related protein
Location	Cucurbita_argyrosperma_scaffold_009 : 21230 .. 21696 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGTACACCCTTTTTGTCTATAATGTATGTAGGACATGTTTAGGACCAGTTTTGAAAATGAAAGTCCATCTCATAAACAAGTTCGTTTAAGAGATTTCGAAAATTATTAGTGATTATATCGGTTTTTGCAACCAAAGCTTAAAACACAAGTATGAAACGCAAGAATCAAGATCTTTAGAACTTGTTATTATCCAACTTTGCCAAGCAAATCATTTCTTTTTTCCATCTTAAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

mRNA sequence

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

Coding sequence (CDS)

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

Protein sequence

SQCLLLLSLSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY

Homology

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: KRH28061.1 (hypothetical protein GLYMA_11G031800 [Glycine max])

HSP 1 Score: 122.9 bits (307), Expect = 5.0e-25
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          LS A  L    CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 15 LSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 74

Query: 69 EEKKDEDGFLY 80
          +EKKDEDGFLY
Sbjct: 75 DEKKDEDGFLY 85

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_004152407.1 (PREDICTED: autophagy-related protein 8f [Cucumis sativus] >XP_004152408.1 PREDICTED: autophagy-related protein 8f [Cucumis sativus] >XP_008437098.1 PREDICTED: autophagy-related protein 8f [Cucumis melo] >KGN50246.1 hypothetical protein Csa_5G161950 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_022154834.1 (autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-related protein 8f [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_022922412.1 (autophagy-related protein 8f [Cucurbita moschata] >XP_023549494.1 autophagy-related protein 8f [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_022995852.1 (autophagy-related protein 8f-like isoform X1 [Cucurbita maxima] >XP_023534014.1 autophagy-related protein 8f-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR10
Match: AT2G05630.2 (Ubiquitin-like superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY
Sbjct: 93  KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLY 151

[Close]

BLAST of Carg02444 vs. TAIR10
Match: AT4G16520.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-25
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR10
Match: AT2G45170.1 (AUTOPHAGY 8E)

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-25
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY
Sbjct: 50  KYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLY 108

[Close]

BLAST of Carg02444 vs. TAIR10
Match: AT3G60640.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-24
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRI+LS EKAIFIFVDNVLPPTGA+MS IY+E K+EDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR10
Match: AT1G62040.2 (Ubiquitin-like superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-23
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYV+RKRIKLS EKAIF+FV N LPPT A+MSAIY+E KDEDGFLY
Sbjct: 63  KYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLY 121

[Close]

BLAST of Carg02444 vs. Swiss-Prot
Match: sp|A1CQS1|ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) OX=344612 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. Swiss-Prot
Match: sp|Q4WJ27|ATG8_ASPFU (Autophagy-related protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. Swiss-Prot
Match: sp|A2QPN1|ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. Swiss-Prot
Match: sp|Q2UBH5|ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. Swiss-Prot
Match: sp|Q0C804|ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. TrEMBL
Match: tr|I1LGN8|I1LGN8_SOYBN (Autophagy-related protein OS=Glycine max OX=3847 GN=100781703 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          LS A  L    CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 15 LSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 74

Query: 69 EEKKDEDGFLY 80
          +EKKDEDGFLY
Sbjct: 75 DEKKDEDGFLY 85

[Close]

BLAST of Carg02444 vs. TrEMBL
Match: tr|A0A1S3ASU6|A0A1S3ASU6_CUCME (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103482618 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. TrEMBL
Match: tr|A0A0A0KR95|A0A0A0KR95_CUCSA (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_5G161950 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. TrEMBL
Match: tr|M5WCF8|M5WCF8_PRUPE (Autophagy-related protein OS=Prunus persica OX=3760 GN=PRUPE_5G072400 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          L G++  T  + +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 10 LLGSERNTQIEFQYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 69

Query: 69 EEKKDEDGFLY 80
          EEKKDEDGFLY
Sbjct: 70 EEKKDEDGFLY 80

[Close]

BLAST of Carg02444 vs. TrEMBL
Match: tr|A0A067HCZ1|A0A067HCZ1_CITSI (Autophagy-related protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033512mg PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-24
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 20 CRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 79
          CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMS IY+EKKDEDGFLY
Sbjct: 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLY 89

The following BLAST results are available for this feature:

BLAST of Carg02444 vs. NCBI nr


Match Name	E-value	Identity	Description
KRH28061.1	5.0e-25	87.32	hypothetical protein GLYMA_11G031800 [Glycine max]	[more]
XP_004152407.1	3.2e-24	98.31	PREDICTED: autophagy-related protein 8f [Cucumis sativus] >XP_004152408.1 PREDIC...	[more]
XP_022154834.1	3.2e-24	98.31	autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-rel...	[more]
XP_022922412.1	3.2e-24	98.31	autophagy-related protein 8f [Cucurbita moschata] >XP_023549494.1 autophagy-rela...	[more]
XP_022995852.1	3.2e-24	98.31	autophagy-related protein 8f-like isoform X1 [Cucurbita maxima] >XP_023534014.1 ...	[more]

BLAST of Carg02444 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G05630.2	1.6e-25	89.83	Ubiquitin-like superfamily protein	[more]
AT4G16520.1	2.1e-25	88.14	Ubiquitin-like superfamily protein	[more]
AT2G45170.1	4.7e-25	86.44	AUTOPHAGY 8E	[more]
AT3G60640.1	2.3e-24	86.44	Ubiquitin-like superfamily protein	[more]
AT1G62040.2	1.5e-23	83.05	Ubiquitin-like superfamily protein	[more]

BLAST of Carg02444 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A1CQS1\|ATG8_ASPCL	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513....	[more]
sp\|Q4WJ27\|ATG8_ASPFU	2.2e-24	83.33	Autophagy-related protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af29...	[more]
sp\|A2QPN1\|ATG8_ASPNC	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513...	[more]
sp\|Q2UBH5\|ATG8_ASPOR	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) O...	[more]
sp\|Q0C804\|ATG8_ASPTN	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156...	[more]

BLAST of Carg02444 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|I1LGN8\|I1LGN8_SOYBN	3.3e-25	87.32	Autophagy-related protein OS=Glycine max OX=3847 GN=100781703 PE=3 SV=1	[more]
tr\|A0A1S3ASU6\|A0A1S3ASU6_CUCME	2.1e-24	98.31	Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103482618 PE=3 SV=1	[more]
tr\|A0A0A0KR95\|A0A0A0KR95_CUCSA	2.1e-24	98.31	Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_5G161950 PE=3 SV=1	[more]
tr\|M5WCF8\|M5WCF8_PRUPE	3.7e-24	84.51	Autophagy-related protein OS=Prunus persica OX=3760 GN=PRUPE_5G072400 PE=3 SV=1	[more]
tr\|A0A067HCZ1\|A0A067HCZ1_CITSI	4.8e-24	95.00	Autophagy-related protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033512mg PE=3 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf
IPR004241	Atg8-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02444-RA	Carg02444-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 8..79 e-value: 4.7E-28 score: 99.9
None	No IPR available	PANTHER	PTHR10969:SF39	AUTOPHAGY-RELATED PROTEIN 8E-RELATED	coord: 19..79
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 11..79 e-value: 1.8E-27 score: 95.5
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 19..79
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 18..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02444	Lsi09G004180	Bottle gourd (USVL1VR-Ls)	carlsiB834
Carg02444	Cla97C01G004150	Watermelon (97103) v2	carwmbB0962
Carg02444	Bhi12G000412	Wax gourd	carwgoB1061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02444	Carg23209	Silver-seed gourd	carcarB506

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02444	Watermelon (97103) v2	carwmbB0963
Carg02444	Wax gourd	carwgoB1064
Carg02444	Cucumber (Gy14) v2	carcgybB0911
Carg02444	Cucumber (Gy14) v1	carcgyB1043
Carg02444	Cucumber (Gy14) v1	carcgyB1045
Carg02444	Cucurbita maxima (Rimu)	carcmaB1261
Carg02444	Cucurbita maxima (Rimu)	carcmaB1263
Carg02444	Cucurbita maxima (Rimu)	carcmaB1268
Carg02444	Cucurbita moschata (Rifu)	carcmoB1230
Carg02444	Cucurbita moschata (Rifu)	carcmoB1232
Carg02444	Cucurbita moschata (Rifu)	carcmoB1237
Carg02444	Cucurbita pepo (Zucchini)	carcpeB1270
Carg02444	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02444	Wild cucumber (PI 183967)	carcpiB0960
Carg02444	Cucumber (Chinese Long) v2	carcuB0938
Carg02444	Cucumber (Chinese Long) v3	carcucB0962
Carg02444	Bottle gourd (USVL1VR-Ls)	carlsiB837
Carg02444	Melon (DHL92) v3.5.1	carmeB0903
Carg02444	Melon (DHL92) v3.5.1	carmeB0905
Carg02444	Melon (DHL92) v3.6.1	carmedB0910
Carg02444	Melon (DHL92) v3.6.1	carmedB0912
Carg02444	Watermelon (Charleston Gray)	carwcgB0897
Carg02444	Watermelon (97103) v1	carwmB0924
Carg02444	Watermelon (97103) v1	carwmB0926