Carg02440 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02440
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Shugoshin-1
Location	Cucurbita_argyrosperma_scaffold_007 : 1794709 .. 1799090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGTAAAGGCTATATAAGACCTGCAAGAAAACAGATATCACATGGTTAATCAGATAGAAAGGCCATGGTAACAGTCCCCCTGCCAGCTTAAGCAATCACAGTATGCAAAGCAAGTGTTCGATAAAATGCCAACAAGAGCCAAAATGTGCGAAACCCACTATTTGGGGCATTTCTCTGGTGAAAACCACAAAACTGGAGTCAATTGGTGTTTATCATCTGAACCTTGAATAGCAAGTTTCAGAGTCTGGAAGAACGATGGAACAGTGAGAATTGAAGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGGTACCGCTTCTCTCAAATCTCTCAACAACAATCTACTTAACTAATGAATGAAATACTGCAAAACCGACCTTAGGGCAAACATAAGACAAATCAAAAAAGAAAGAAATGAAGAGCGAACCCCAAAAAATATAGATAGGAAGAAGAAATAAGAGAATTGGAATATATAACATCCTCTGTCTATTCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCCCTTTAGGTGTGTCCTTTTGCAGCCTGTTGCTGACATTTTTCTACCTGGTTTTTGGGTCACCCAAATTTGTTCTAGGGATATGAACACATTATTCTAATAGGGTATAATCCAGAGACACAGCCAAGGAAAGGGAAGATGGGCTTCTTCCTTCTTTCTCTGTCTCTCTATTAAAAAAATCTGTGCTGAGCTGAGATGAGACACTCTGTTCTAATGTTCTTTATTTTGATTCTTCATTAATATCTTATGCTTTTTCCTTTTGTGTTAAATGTTGTGTTTCTGGAGCATTTTAGTGGTCAGTGCTACTTCAATTTTTAATTTTCGTCCTCGATCAACCTGTGTTAGTTTATGGTTGTATGCCCGTTCCAAAACCCATATTACATCCTTTTCATTTTAGATAGGCCTTTACCATTTCATATCGGGTCAATACGGGAGTGTATGACTGTTCACTAGAATCATGTCTACACCTAACCGTGCTAAAATACCCCAAAATGTACTAGAGGGAGACATGATCGGTTGTCAAGTTCTCCCTACTCGAATAGTTATATATTTTCAGTTCACCCGAATCATGTCTACACCATAGCTAAAATGCTCCAAAATAGAGTAAGATATGACTAGTTGTCAACTTCTCCTTATTTGAATAGTTGTTGCCTTTGCTTGCATGCTATATAACACTGTTTTCAATCTCTCACTAAATCTTGTTTTCAAACTCTCTTTCGAAAACCTCTTTGCTCCCGTTTTTCAAAACTTTCTTCTTAAATCAGAGCCAGAGACTTGAGCATATGTTGTCTGACCATAGGCGACACGCAAACGAATTGGCTTAATTCACTCGTTGCTGAGGAGTGAATGCCGAAAAAAATATGTGTTTAGTGTTGCATGGAAAATGTCACAATTTTATTATATGGTTTAATTTTAGATAATTAACTGCATGTTAAATATGAACTACTACAGTCTCGAGTGAGAAGTGTATGTTAAATACTGCGGAGTTGGTAGGGTTTAAATTTGTGGTCTCGAGTAAGGAATGCATATTAATTATTGCAATGGACGGATTAGTGAAAGAGTCGAGATATTTGATTTTTAAAATATCGGATAAGGGATTATTTCATTTCTTTATTTTTTTAAAAAAATTCGTTAATTTTAAAAAGAAAAATGAAGAATTTACTCAAACTTAAAAAGTTATTTTTGGTGGTCGGTTTCTTATTTATAATTTTTGCTTTTTTGATAATAACGAAGAGAGCTGAATATTCACTTATTACCTTTAAAATTACAAAGTATACAGCAAAAAAAAAAAAAAAAAAAAACCACGAATAAATAAATAAATAAATAAACAAACAAAAATATCTCAAATTAACTAAATCTAAAATAATAATATTAATAATAATAATAATACTAATATAAAAAAAATATTGATTTGAAAATATATATATTGTTGGAGGTGCAATTCTTAATTGTCAATCTATTTCACCATCTACATTAATTCCATCAACCTTGCATCAAATTAAAATATATTTTTATATTATTTTTAATAAAATTATTTCATGATAGCAAGGATTAGACTGAACTTTATAGGTATAACAAAAGTCAACGAACATTATAAAACAAAAATACTTTTTTTATTAAGAAGAATATCTCGATAATTTTTTTAATTAATTTTTGGTGAGCTATTTGAGAATTTTTTTTTTAAATTTAATTATTTTTTTCATATTCGGGCCTATCAGAGCCCAATACGGCGCCAATATGAAGCCCATCGTCCCCCATTAGAAACGTTGGGTTCGGGGTAGCCGTACGAAGTTTTGAAATAGCTTCGAACTTGCTTCGGACAGCCGTTGTGCTCCCGGTAACATTTTACAATTTTACCCTCAACTTATATCAATTTCGCGCTTAATCCTGCTCGGAATTCATCTCTTTTCAGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGGTACTTTTTGTTTTTGATTTCTTCCATTAGGACTAACTTCTTGATCTGTTCCCTCTATTGCTTTCGAATTCTGCAGATTCCTTACTGTTAGTTTTCCTGAAAATCATTCGATTTTGATGATTTGAGGTTGCTTAATTGGAATCCTAATTGCATTTCGTGGTTTATATGGTTTAACAAGGATTCTAGGTTTTGAATGCACACCATTTACTCCCGTTGTTTTTACGATTTTTAGGGTTTTTAATCTGCATGCGTTTTTGTAGATTTTTTGGAGAATAATTGAATTTGGATGAACTACCTCGTGCTGTTCTTAGTAAATTGAAGCTAGTCATTCACTAGTTTAGAATGCATTGAAAGAGTTTGTTGATATTTAGCTAGTGATTTTCAAGTTTGTATTAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGTACTTCTGATGTGTTCTATAAGCTGCCCAGTTTGATTGGCTCATCTTATTGATGATGCTTTTATTTTTCTTTCCAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAAGTATCCTTTGTGACAGTCATAATCCATAACAGAAATAGTCTTTGTTTTTCTGTTCGGGCTTTATATATACATACGTACGTAAGTACATATATAATCGATGAACTTTCTTTTTCCTTGATGAGTATTTTCGAATAGTCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGGTAATCTTGCACCTGCATCTTTGTGTCTTTAGTTTCCATTTTATCACTTGTTCATGGCAAGCTAGTATCCTAGAAAATAAATTTTAATGATCTTCTACACTTGACGACGTGGTTCTTTCTATTTTTAGGAACTTAATTCAGGTAAAGAAAGGGTGAGTGATATTTCTATCATCTGAAATTTGATTTAGTTTGCAGATGGAACCCTTTAATTTGCTGCAACTGAATGTAATTTATGGTTCTGCAGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGAGGTACTTTAATTTTTATTGTTTCATTTAACAAAATTTGCAATTAAAGTGCTTATTGATTATTGACACCGAAACTCTTCTCCAGAGAAGAAAAGAAAAAGCAGGCGACATGTTCAGCCTGGAGGGGTAATAAAAACCACAATTACTGTTGTTATTTCTTTAAGTAAATATTTCTTATGCTTCTTAACCCTTTCTTTCTCCTACCTTCAAGGTAGGGACCGCCGAGTGTAGTGAG

mRNA sequence

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAATCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGAGGTACTTTAATTTTTATTGTTTCATTTAACAAAATTTGCAATTAAAGTGCTTATTGATTATTGACACCGAAACTCTTCTCCAGAGAAGAAAAGAAAAAGCAGGCGACATGTTCAGCCTGGAGGGGTAGGGACCGCCGAGTGTAGTGAG

Coding sequence (CDS)

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAATCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGA

Protein sequence

MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNKTRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI

Homology

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550311.1 (SHUGOSHIN 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550313.1 (SHUGOSHIN 2-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550312.1 (SHUGOSHIN 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550314.1 (SHUGOSHIN 2-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. NCBI nr
Match: XP_022992970.1 (SHUGOSHIN 2-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 3.7e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

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BLAST of Carg02440 vs. TAIR10
Match: AT5G04320.2 (Shugoshin C terminus)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-20
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 179 SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAER 238
           S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA R
Sbjct: 11  SNRVLGSQK------DNVKQ---MDKEETQQKENMLFSSQEYAAKLQKENMTLMKALAHR 70

Query: 239 NRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFF 296
           N+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQHELGCKNA  
Sbjct: 71  NKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQHELGCKNALL 127

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BLAST of Carg02440 vs. TAIR10
Match: AT3G10440.1 (Shugoshin C terminus)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 173 GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMAL 232
           G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L
Sbjct: 24  GEKMVLEPPMNSAQRRKLGDITNLQNQKNLMNQGAKHQQQAILISSKENAENLQKENTKL 83

Query: 233 TKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHEL 292
            KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+++LA        LK LQHEL
Sbjct: 84  MKVVMERDGI----KSDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHEL 143

Query: 293 GCKNAFFMSKEKLI 297
           GCKN   M+++ L+
Sbjct: 144 GCKNGLVMARKMLL 153

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BLAST of Carg02440 vs. Swiss-Prot
Match: sp|Q0WTB8|SGO2_ARATH (SHUGOSHIN 2 OS=Arabidopsis thaliana OX=3702 GN=SGO2 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-19
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 179 SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAER 238
           S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA R
Sbjct: 11  SNRVLGSQK------DNVKQ---MDKEETQQKENMLFSSQEYAAKLQKENMTLMKALAHR 70

Query: 239 NRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFF 296
           N+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQHELGCKNA  
Sbjct: 71  NKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQHELGCKNALL 127

[Close]

BLAST of Carg02440 vs. Swiss-Prot
Match: sp|F4J3S1|SGO1_ARATH (SHUGOSHIN 1 OS=Arabidopsis thaliana OX=3702 GN=SGO1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-15
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 173 GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMAL 232
           G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L
Sbjct: 24  GEKMVLEPPMNSAQRRKLGDITNLQNQKNLMNQGAKHQQQAILISSKENAENLQKENTKL 83

Query: 233 TKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHEL 292
            KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+++LA        LK LQHEL
Sbjct: 84  MKVVMERDGI----KSDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHEL 143

Query: 293 GCKNAFFMSKEKLI 297
           GCKN   M+++ L+
Sbjct: 144 GCKNGLVMARKMLL 153

[Close]

BLAST of Carg02440 vs. Swiss-Prot
Match: sp|E3VXF2|SGO1_ORYSJ (Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.7e-08
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 225 KENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LK 284
           KEN  L  +LAERN++IE+S  EL+ +R   Q +QQ+NLQ  QANSQM A        +K
Sbjct: 55  KENAKLRHLLAERNKVIEVSRVELQKIRLALQAMQQKNLQLVQANSQMFAEINQGKDRIK 114

Query: 285 DLQHELGCKNAFFMSK 293
            LQHEL C  A    K
Sbjct: 115 LLQHELACTIAVLKVK 130

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BLAST of Carg02440 vs. Swiss-Prot
Match: sp|Q4QSC8|SGO1_MAIZE (Shugoshin-1 OS=Zea mays OX=4577 GN=SGO1 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.0e-05
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 220 VDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA----- 279
           V  L KEN  L  +L E+ +II++S  E+  LR   Q  +QQNL   Q NSQMLA     
Sbjct: 59  VPDLVKENTKLLTLLNEKTKIIDLSRVEIYKLRLALQASKQQNLHLTQTNSQMLAEINTG 118

Query: 280 ---LKDLQHELGCKNAFFMSKE 294
              +K LQHEL C  A    K+
Sbjct: 119 KDRIKMLQHELSCTTALLKVKD 140

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BLAST of Carg02440 vs. TrEMBL
Match: tr|A0A1S3C330|A0A1S3C330_CUCME (shugoshin-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496463 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.0e-44
Identity = 112/161 (69.57%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           ME  ISLD KN G       V GQN++IAG KTMKSSK    QRKRLSDISNLKEQP LQ
Sbjct: 1   MENIISLDPKNCG-------VVGQNVKIAGEKTMKSSK---GQRKRLSDISNLKEQPTLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK Q  LL TYEYVDKLQKENM L KV+AERNRIIEISGNELE LRTNFQKLQQQN+
Sbjct: 61  KRDTKTQPGLLMTYEYVDKLQKENMTLMKVIAERNRIIEISGNELEKLRTNFQKLQQQNM 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKEKLI 297
           Q AQAN QMLA        LK LQHELGCKN   MS++ ++
Sbjct: 121 QLAQANCQMLAELNSSKDRLKALQHELGCKNGILMSRKLVL 151

[Close]

BLAST of Carg02440 vs. TrEMBL
Match: tr|A0A0A0LMD0|A0A0A0LMD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326470 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.7e-38
Identity = 102/158 (64.56%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           ME  ISLD +N G       V GQN+ +AG KTM SSKVGG QRKRLSDISN KEQP LQ
Sbjct: 1   MENIISLDPENCG-------VVGQNVNVAGEKTMGSSKVGGGQRKRLSDISNWKEQPTLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQ-- 263
           K DTK Q  LL T EYVDKLQKENM L KV+AERNRIIEISG ELE LRTNFQKLQQQ  
Sbjct: 61  KRDTKTQPGLLMTCEYVDKLQKENMTLMKVIAERNRIIEISGKELEKLRTNFQKLQQQXX 120

Query: 264 ------NLQFAQANSQMLALKDLQHELGCKNAFFMSKE 294
                     A+ NS    LK LQHELGCKN   MS++
Sbjct: 121 XXXXXXXXXLAELNSCKDRLKALQHELGCKNGILMSRK 151

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BLAST of Carg02440 vs. TrEMBL
Match: tr|A0A1S3C3G9|A0A1S3C3G9_CUCME (shugoshin-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496463 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 94/128 (73.44%), Postives = 100/128 (78.12%), Query Frame = 0


Query: 177 MKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAE 236
           MKSSK    QRKRLSDISNLKEQP LQK DTK Q  LL TYEYVDKLQKENM L KV+AE
Sbjct: 1   MKSSK---GQRKRLSDISNLKEQPTLQKRDTKTQPGLLMTYEYVDKLQKENMTLMKVIAE 60

Query: 237 RNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAF 296
           RNRIIEISGNELE LRTNFQKLQQQN+Q AQAN QMLA        LK LQHELGCKN  
Sbjct: 61  RNRIIEISGNELEKLRTNFQKLQQQNMQLAQANCQMLAELNSSKDRLKALQHELGCKNGI 120

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BLAST of Carg02440 vs. TrEMBL
Match: tr|V4VBS1|V4VBS1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10033807mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 173 GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK-QQSSLLKTYEYVDKLQKENMALT 232
           G K  K SK+G + RKRL DISN+++ P     + K QQ+  + T +Y+DKL KENM L 
Sbjct: 7   GEKRAKGSKIGSSPRKRLGDISNMQQLPKPSNQEAKPQQTFSVVTSDYIDKLHKENMTLM 66

Query: 233 KVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMS 292
           KVL +RN+IIE+SG EL+ LR N QK+QQQNL  AQANSQMLALK LQHELGCKNA   +
Sbjct: 67  KVLTDRNKIIELSGIELQKLRINLQKVQQQNLLLAQANSQMLALKALQHELGCKNALVKA 126

Query: 293 KE 294
           ++
Sbjct: 127 RK 128

[Close]

BLAST of Carg02440 vs. TrEMBL
Match: tr|A0A2H5PQ52|A0A2H5PQ52_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_157120 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.0e-26
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 160 TGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK-QQSSLLKTYE 219
           T N +   + +  G K  K SK+G + RKRL DISN+++ P     + K QQ+  + T +
Sbjct: 9   TENRIGMSDGKAKGEKRAKGSKIGSSPRKRLGDISNMQQLPKPSNQEAKPQQTFSVVTSD 68

Query: 220 YVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDL 279
           Y+DKL KENM L KVL +RN+IIE+SG EL+ LR N QK+QQQNL  AQANSQMLALK L
Sbjct: 69  YIDKLHKENMTLMKVLTDRNKIIELSGIELQKLRINLQKVQQQNLLLAQANSQMLALKAL 128

Query: 280 QHELGCKNA 288
           QHELGCKNA
Sbjct: 129 QHELGCKNA 137

The following BLAST results are available for this feature:

BLAST of Carg02440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550311.1	1.8e-59	84.81	SHUGOSHIN 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023550313.1	1.8e-59	84.81	SHUGOSHIN 2-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023550312.1	1.8e-59	84.81	SHUGOSHIN 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023550314.1	1.8e-59	84.81	SHUGOSHIN 2-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_022992970.1	3.7e-57	81.65	SHUGOSHIN 2-like isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg02440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04320.2	4.4e-20	47.62	Shugoshin C terminus	[more]
AT3G10440.1	1.3e-16	42.54	Shugoshin C terminus	[more]

BLAST of Carg02440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0WTB8\|SGO2_ARATH	8.0e-19	47.62	SHUGOSHIN 2 OS=Arabidopsis thaliana OX=3702 GN=SGO2 PE=2 SV=1	[more]
sp\|F4J3S1\|SGO1_ARATH	2.4e-15	42.54	SHUGOSHIN 1 OS=Arabidopsis thaliana OX=3702 GN=SGO1 PE=3 SV=1	[more]
sp\|E3VXF2\|SGO1_ORYSJ	3.7e-08	48.68	Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1	[more]
sp\|Q4QSC8\|SGO1_MAIZE	1.0e-05	42.68	Shugoshin-1 OS=Zea mays OX=4577 GN=SGO1 PE=2 SV=2	[more]

BLAST of Carg02440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C330\|A0A1S3C330_CUCME	7.0e-44	69.57	shugoshin-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496463 PE=4 SV=1	[more]
tr\|A0A0A0LMD0\|A0A0A0LMD0_CUCSA	5.7e-38	64.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326470 PE=4 SV=1	[more]
tr\|A0A1S3C3G9\|A0A1S3C3G9_CUCME	1.1e-36	73.44	shugoshin-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496463 PE=4 SV=1	[more]
tr\|V4VBS1\|V4VBS1_9ROSI	3.9e-26	58.20	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10033...	[more]
tr\|A0A2H5PQ52\|A0A2H5PQ52_CITUN	5.0e-26	56.59	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_157120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02440-RA	Carg02440-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..268
None	No IPR available	PANTHER	PTHR34373	FAMILY NOT NAMED	coord: 170..293

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02440	Cla013735	Watermelon (97103) v1	carwmB0252
Carg02440	MELO3C019841	Melon (DHL92) v3.5.1	carmeB0268
Carg02440	ClCG08G007860	Watermelon (Charleston Gray)	carwcgB0263
Carg02440	CmaCh15G004990	Cucurbita maxima (Rimu)	carcmaB0362
Carg02440	CmaCh04G025480	Cucurbita maxima (Rimu)	carcmaB0367
Carg02440	CmoCh04G026660	Cucurbita moschata (Rifu)	carcmoB0364
Carg02440	CmoCh15G005070	Cucurbita moschata (Rifu)	carcmoB0362
Carg02440	Lsi08G006860	Bottle gourd (USVL1VR-Ls)	carlsiB244
Carg02440	Cp4.1LG01g24620	Cucurbita pepo (Zucchini)	carcpeB0367
Carg02440	Cp4.1LG13g10300	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02440	MELO3C019841.2	Melon (DHL92) v3.6.1	carmedB0279
Carg02440	Cla97C08G150610	Watermelon (97103) v2	carwmbB0278
Carg02440	Bhi04G001051	Wax gourd	carwgoB0346

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02440	Carg04588	Silver-seed gourd	carcarB307

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02440	Bottle gourd (USVL1VR-Ls)	carlsiB243