Carg02297 (gene) Silver-seed gourd

Overview
NameCarg02297
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCASP-like protein
LocationCucurbita_argyrosperma_scaffold_007 : 1077879 .. 1077992 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGTTCCCAGATATGGCTGTCACGTCTGTGGGATTGTCCATTGTTGCATTTGTAGCTTTTGCCTTGAGCTGTATAATCTCTGGTTATACCCTCTGTAAATCTGCTTAG

mRNA sequence

ATGGACAAGTTCCCAGATATGGCTGTCACGTCTGTGGGATTGTCCATTGTTGCATTTGTAGCTTTTGCCTTGAGCTGTATAATCTCTGGTTATACCCTCTGTAAATCTGCTTAG

Coding sequence (CDS)

ATGGACAAGTTCCCAGATATGGCTGTCACGTCTGTGGGATTGTCCATTGTTGCATTTGTAGCTTTTGCCTTGAGCTGTATAATCTCTGGTTATACCCTCTGTAAATCTGCTTAG

Protein sequence

MDKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA
Homology
[Close]
BLAST of Carg02297 vs. NCBI nr
Match: XP_022938613.1 (CASP-like protein 4A1 [Cucurbita moschata] >XP_022938614.1 CASP-like protein 4A1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1   MDKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           MDKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA
Sbjct: 291 MDKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 327

[Close]
BLAST of Carg02297 vs. NCBI nr
Match: XP_022993636.1 (CASP-like protein 4A1 [Cucurbita maxima] >XP_022993637.1 CASP-like protein 4A1 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1   MDKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           MDKFPDMA+TSVGLSIVAFVAFALSCIISGYTLCKSA
Sbjct: 293 MDKFPDMAITSVGLSIVAFVAFALSCIISGYTLCKSA 329

[Close]
BLAST of Carg02297 vs. NCBI nr
Match: XP_023550770.1 (CASP-like protein 4A1 [Cucurbita pepo subsp. pepo] >XP_023550771.1 CASP-like protein 4A1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFPDMA+TSVGLSIVAFVAFALSCIISGYTLCKSA
Sbjct: 294 DKFPDMAITSVGLSIVAFVAFALSCIISGYTLCKSA 329

[Close]
BLAST of Carg02297 vs. NCBI nr
Match: XP_022133823.1 (CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A1 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 9.9e-08
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFPDMA  SVGLSIVAFVAFALSC+ISG+TLCKSA
Sbjct: 277 DKFPDMAAASVGLSIVAFVAFALSCLISGHTLCKSA 312

[Close]
BLAST of Carg02297 vs. NCBI nr
Match: XP_004142358.1 (PREDICTED: CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical protein Csa_5G630810 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFPDMA  S+G SIVAFVAFALSCIISGYTLCKSA
Sbjct: 302 DKFPDMATGSLGFSIVAFVAFALSCIISGYTLCKSA 337

[Close]
BLAST of Carg02297 vs. TAIR10
Match: AT5G40300.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 42.0 bits (97), Expect = 9.5e-05
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLC 35
           DKFPD+A  SV LS V+FVAFA   + SGY LC
Sbjct: 233 DKFPDLARASVALSYVSFVAFAFCSLASGYALC 265

[Close]
BLAST of Carg02297 vs. TrEMBL
Match: tr|A0A0A0KS01|A0A0A0KS01_CUCSA (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFPDMA  S+G SIVAFVAFALSCIISGYTLCKSA
Sbjct: 302 DKFPDMATGSLGFSIVAFVAFALSCIISGYTLCKSA 337

[Close]
BLAST of Carg02297 vs. TrEMBL
Match: tr|A0A1S3C844|A0A1S3C844_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFPDMA  S+ LSIVAFVAFALSCIISGYTLCKSA
Sbjct: 289 DKFPDMATGSLALSIVAFVAFALSCIISGYTLCKSA 324

[Close]
BLAST of Carg02297 vs. TrEMBL
Match: tr|A0A2I4EUM6|A0A2I4EUM6_9ROSI (CASP-like protein OS=Juglans regia OX=51240 GN=LOC108992855 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-04
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLCKSA 38
           DKFP+MA  SVGLS VA VAFALS +ISGYTLCK++
Sbjct: 281 DKFPEMAGASVGLSFVASVAFALSSLISGYTLCKAS 316

[Close]
BLAST of Carg02297 vs. TrEMBL
Match: tr|A0A2N9F2Q2|A0A2N9F2Q2_FAGSY (CASP-like protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9142 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.8e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 2   DKFPDMAVTSVGLSIVAFVAFALSCIISGYTLC 35
           D+FP+MA  SVGLS VAF+AFALS +ISGYTLC
Sbjct: 300 DEFPEMASASVGLSFVAFLAFALSSLISGYTLC 332

The following BLAST results are available for this feature:
BLAST of Carg02297 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938613.14.7e-10100.00CASP-like protein 4A1 [Cucurbita moschata] >XP_022938614.1 CASP-like protein 4A1... [more]
XP_022993636.16.2e-1097.30CASP-like protein 4A1 [Cucurbita maxima] >XP_022993637.1 CASP-like protein 4A1 [... [more]
XP_023550770.11.8e-0997.22CASP-like protein 4A1 [Cucurbita pepo subsp. pepo] >XP_023550771.1 CASP-like pro... [more]
XP_022133823.19.9e-0888.89CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A... [more]
XP_004142358.11.7e-0788.89PREDICTED: CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical prot... [more]
BLAST of Carg02297 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40300.19.5e-0563.64Uncharacterised protein family (UPF0497)[more]
BLAST of Carg02297 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg02297 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KS01|A0A0A0KS01_CUCSA1.1e-0788.89CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1[more]
tr|A0A1S3C844|A0A1S3C844_CUCME1.9e-0788.89CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1[more]
tr|A0A2I4EUM6|A0A2I4EUM6_9ROSI2.0e-0475.00CASP-like protein OS=Juglans regia OX=51240 GN=LOC108992855 PE=3 SV=1[more]
tr|A0A2N9F2Q2|A0A2N9F2Q2_FAGSY9.8e-0475.76CASP-like protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9142 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02297-RACarg02297-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11615:SF135CASP-LIKE PROTEIN 4A1coord: 2..35
NoneNo IPR availablePANTHERPTHR11615NITRATE, FROMATE, IRON DEHYDROGENASEcoord: 2..35
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02297CsGy5G027500Cucumber (Gy14) v2carcgybB0280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg02297Wax gourdcarwgoB0338
Carg02297Wax gourdcarwgoB0339
Carg02297Wax gourdcarwgoB0352
Carg02297Silver-seed gourdcarcarB298
Carg02297Silver-seed gourdcarcarB299
Carg02297Silver-seed gourdcarcarB300
Carg02297Silver-seed gourdcarcarB306
Carg02297Silver-seed gourdcarcarB312
Carg02297Cucumber (Gy14) v2carcgybB0274
Carg02297Cucumber (Gy14) v1carcgyB0304
Carg02297Cucumber (Gy14) v1carcgyB0309
Carg02297Cucumber (Gy14) v1carcgyB0320
Carg02297Cucurbita maxima (Rimu)carcmaB0364
Carg02297Cucurbita maxima (Rimu)carcmaB0357
Carg02297Cucurbita maxima (Rimu)carcmaB0359
Carg02297Cucurbita maxima (Rimu)carcmaB0360
Carg02297Cucurbita maxima (Rimu)carcmaB0362
Carg02297Cucurbita maxima (Rimu)carcmaB0374
Carg02297Cucurbita moschata (Rifu)carcmoB0359
Carg02297Cucurbita moschata (Rifu)carcmoB0360
Carg02297Cucurbita moschata (Rifu)carcmoB0362
Carg02297Cucurbita moschata (Rifu)carcmoB0370
Carg02297Cucurbita pepo (Zucchini)carcpeB0363
Carg02297Cucurbita pepo (Zucchini)carcpeB0366
Carg02297Cucurbita pepo (Zucchini)carcpeB0374
Carg02297Cucurbita pepo (Zucchini)carcpeB0378
Carg02297Cucurbita pepo (Zucchini)carcpeB0381
Carg02297Wild cucumber (PI 183967)carcpiB0291
Carg02297Wild cucumber (PI 183967)carcpiB0288
Carg02297Wild cucumber (PI 183967)carcpiB0297
Carg02297Cucumber (Chinese Long) v2carcuB0285
Carg02297Cucumber (Chinese Long) v2carcuB0287
Carg02297Cucumber (Chinese Long) v2carcuB0293
Carg02297Cucumber (Chinese Long) v3carcucB0290
Carg02297Cucumber (Chinese Long) v3carcucB0296
Carg02297Bottle gourd (USVL1VR-Ls)carlsiB232
Carg02297Bottle gourd (USVL1VR-Ls)carlsiB233
Carg02297Bottle gourd (USVL1VR-Ls)carlsiB237
Carg02297Melon (DHL92) v3.5.1carmeB0260
Carg02297Melon (DHL92) v3.5.1carmeB0266
Carg02297Melon (DHL92) v3.5.1carmeB0272
Carg02297Melon (DHL92) v3.6.1carmedB0270
Carg02297Melon (DHL92) v3.6.1carmedB0277
Carg02297Melon (DHL92) v3.6.1carmedB0283
Carg02297Watermelon (Charleston Gray)carwcgB0249
Carg02297Watermelon (Charleston Gray)carwcgB0251
Carg02297Watermelon (97103) v1carwmB0246
Carg02297Watermelon (97103) v1carwmB0248
Carg02297Watermelon (97103) v2carwmbB0266
Carg02297Watermelon (97103) v2carwmbB0279