Carg02276 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02276
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	metalloendoproteinase 2-MMP-like
Location	Cucurbita_argyrosperma_scaffold_007 : 988034 .. 988835 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTTACCAAATCAACTACAATCTCAAGGCCACCGGAGCTCTCGACGCCACGACGCTGGCTCAAATGTCGAAACCTCGATGCGGGGTTGCGGATATCATCGACGGCAAGAGTGGGATGAAATCAGGCAAGAATATGGTGAATCAACATAGAAAAAGTGGTCATTTCCATCAAGTTTCTCATTTTACTTTCTTCAAAGGAAACCTTAAATGGCCTAATTCCAAGTCTCACCTCACTTATGGTAAATTTAGTTTTCATATAAAGTTGAGTTATATTTTACATCATCTTCTATACTAATATCATGATTTATTTAGGATTCCTCCCTGGAACTCCGTCGGGGGCGGTAGATCCGGTGGGTCGAGCTTTTACGACATGGGCTGCGAACACTCACTTCAGCTTCTCCCTAGCGTCTAGCTACAAAACTGCTGACATCAAAATAAGCTTTGAAAGGGGTGACCATGGACATGGCTTTCCCTTTGACAATGTTGGAGGAGTGATAGCCCATGCTTTTGCCCCTACAGATGGCAGTTACATTTTGACGCAGTCGAGCGTTGGACCGATGGGGCGGTTCCTAATTCGTACGATGTCGAGACGGTAGCATTGCATGAGATCGGACACCTTCTCGGCCTTTATCATAGCTCGGTCGAAGGGGCTATTATGTGGCCAACCATCATGAGAGGAGCTACCAAGGGTTTGCATGCCGATGATATTGCAGGCATCAAGGCTTTATACACTCCTACCTCTTGAGTACCAAGGCTTTTAATTTTGACTTCAAACTATTGTTAGTAATTAATCATTATTTT

mRNA sequence

AAACTTACCAAATCAACTACAATCTCAAGGCCACCGGAGCTCTCGACGCCACGACGCTGGCTCAAATGTCGAAACCTCGATGCGGGGTTGCGGATATCATCGACGGCAAGAGTGGGATGAAATCAGGCAAGAATATGGTGAATCAACATAGAAAAAGTGGTCATTTCCATCAAGTTTCTCATTTTACTTTCTTCAAAGGAAACCTTAAATGGCCTAATTCCAAGTCTCACCTCACTTATGTAATTAATCATTATTTT

Coding sequence (CDS)

ATGTCGAAACCTCGATGCGGGGTTGCGGATATCATCGACGGCAAGAGTGGGATGAAATCAGGCAAGAATATGGTGAATCAACATAGAAAAAGTGGTCATTTCCATCAAGTTTCTCATTTTACTTTCTTCAAAGGAAACCTTAAATGGCCTAATTCCAAGTCTCACCTCACTTATGTAATTAATCATTATTTT

Protein sequence

MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINHYF

Homology

[Close]

BLAST of Carg02276 vs. NCBI nr
Match: XP_022939137.1 (metalloendoproteinase 2-MMP-like [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
          MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
Sbjct: 28 MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY 85

[Close]

BLAST of Carg02276 vs. NCBI nr
Match: XP_023551531.1 (metalloendoproteinase 2-MMP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADIIDGKSGMKSG NMVNQHRKSGHFH+VSHFTFFKGNLKWPNSKSHLTY
Sbjct: 107 MSKPRCGVADIIDGKSGMKSGNNMVNQHRKSGHFHEVSHFTFFKGNLKWPNSKSHLTY 164

[Close]

BLAST of Carg02276 vs. NCBI nr
Match: XP_008458713.1 (PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADII+G++GMKSGK +VN+HRK  GHFH+VSHF FF+GNLKWPNSKSHLTY
Sbjct: 81  MSKPRCGVADIINGRTGMKSGKRLVNRHRKIIGHFHEVSHFAFFEGNLKWPNSKSHLTY 139

[Close]

BLAST of Carg02276 vs. NCBI nr
Match: XP_004142457.1 (PREDICTED: metalloendoproteinase 1-like [Cucumis sativus] >KGN52418.1 hypothetical protein Csa_5G633160 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 8.7e-20
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADII+GK+ MKSGK  VNQHRK SGHFH+VSHF FF+GNL+WP+SKSHLTY
Sbjct: 112 MSKPRCGVADIINGKTSMKSGKRFVNQHRKISGHFHEVSHFAFFEGNLRWPDSKSHLTY 170

[Close]

BLAST of Carg02276 vs. NCBI nr
Match: XP_008458907.1 (PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-18
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADIIDGK+ MKSGK MVNQHRK +GHFH VSH+ FF GN KWP SK HLTY
Sbjct: 115 MSKPRCGVADIIDGKTRMKSGKKMVNQHRKINGHFHTVSHYAFFDGNPKWPASKFHLTY 173

[Close]

BLAST of Carg02276 vs. TAIR10
Match: AT1G24140.1 (Matrixin family protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-07
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 4   PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN 62
           PRCG  D+++G S M SG+    V+   +   FH V H++FF G  +WP ++  LTY  +
Sbjct: 121 PRCGNPDVVNGTSTMHSGRKTFEVSFAGRGQRFHAVKHYSFFPGEPRWPRNRRDLTYAFD 180

[Close]

BLAST of Carg02276 vs. TAIR10
Match: AT1G70170.1 (matrix metalloproteinase)

HSP 1 Score: 45.1 bits (105), Expect = 1.9e-05
Identity = 21/59 (35.59%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 4   PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN 62
           PRCG  D+++G S M  G+    +   S  H H V  +T F G  +WP ++  LTY  +
Sbjct: 118 PRCGNPDVVNGTSLMHGGRRKTFEVNFSRTHLHAVKRYTLFPGEPRWPRNRRDLTYAFD 176

[Close]

BLAST of Carg02276 vs. TAIR10
Match: AT1G59970.1 (Matrixin family protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.3e-04
Identity = 22/56 (39.29%), Postives = 27/56 (48.21%), Query Frame = 0


Query: 3   KPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           KPRCG  D+IDG S M  GK +               ++FF G  +WP  K  LTY
Sbjct: 116 KPRCGNPDLIDGVSEMNGGKIL----------RTTEKYSFFPGKPRWPKRKRDLTY 161

[Close]

BLAST of Carg02276 vs. Swiss-Prot
Match: sp|Q5XF51|3MMP_ARATH (Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana OX=3702 GN=3MMP PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-06
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 4   PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN 62
           PRCG  D+++G S M SG+    V+   +   FH V H++FF G  +WP ++  LTY  +
Sbjct: 121 PRCGNPDVVNGTSTMHSGRKTFEVSFAGRGQRFHAVKHYSFFPGEPRWPRNRRDLTYAFD 180

[Close]

BLAST of Carg02276 vs. Swiss-Prot
Match: sp|O04529|2MMP_ARATH (Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana OX=3702 GN=2MMP PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-04
Identity = 21/59 (35.59%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 4   PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN 62
           PRCG  D+++G S M  G+    +   S  H H V  +T F G  +WP ++  LTY  +
Sbjct: 118 PRCGNPDVVNGTSLMHGGRRKTFEVNFSRTHLHAVKRYTLFPGEPRWPRNRRDLTYAFD 176

[Close]

BLAST of Carg02276 vs. TrEMBL
Match: tr|A0A1S3C925|A0A1S3C925_CUCME (metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498039 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADII+G++GMKSGK +VN+HRK  GHFH+VSHF FF+GNLKWPNSKSHLTY
Sbjct: 81  MSKPRCGVADIINGRTGMKSGKRLVNRHRKIIGHFHEVSHFAFFEGNLKWPNSKSHLTY 139

[Close]

BLAST of Carg02276 vs. TrEMBL
Match: tr|A0A0A0KS47|A0A0A0KS47_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633160 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-20
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADII+GK+ MKSGK  VNQHRK SGHFH+VSHF FF+GNL+WP+SKSHLTY
Sbjct: 112 MSKPRCGVADIINGKTSMKSGKRFVNQHRKISGHFHEVSHFAFFEGNLRWPDSKSHLTY 170

[Close]

BLAST of Carg02276 vs. TrEMBL
Match: tr|A0A1S3C9I6|A0A1S3C9I6_CUCME (metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498171 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-18
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADIIDGK+ MKSGK MVNQHRK +GHFH VSH+ FF GN KWP SK HLTY
Sbjct: 115 MSKPRCGVADIIDGKTRMKSGKKMVNQHRKINGHFHTVSHYAFFDGNPKWPASKFHLTY 173

[Close]

BLAST of Carg02276 vs. TrEMBL
Match: tr|A0A0A0KU08|A0A0A0KU08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G632130 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-18
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MS+PRCG ADI+DGK+ MKSGK MVNQHRK +GHFH VSH+ FF GN KWP SKSHLTY
Sbjct: 115 MSRPRCGFADIVDGKTRMKSGKKMVNQHRKINGHFHSVSHYAFFDGNPKWPASKSHLTY 173

[Close]

BLAST of Carg02276 vs. TrEMBL
Match: tr|A0A0A0KS39|A0A0A0KS39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G632120 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-12
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1   MSKPRCGVADIIDGKSGMKSGKNMVN-QHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY 59
           MSKPRCGVADII G + M+S K     +H   GHFH VSHF FF GN KWP +KSHLTY
Sbjct: 117 MSKPRCGVADIIHGNTWMRSSKKRKQLEHGIVGHFHSVSHFAFFDGNPKWPATKSHLTY 175

The following BLAST results are available for this feature:

BLAST of Carg02276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939137.1	2.1e-26	100.00	metalloendoproteinase 2-MMP-like [Cucurbita moschata]	[more]
XP_023551531.1	1.8e-25	96.55	metalloendoproteinase 2-MMP-like [Cucurbita pepo subsp. pepo]	[more]
XP_008458713.1	3.9e-20	81.36	PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo]	[more]
XP_004142457.1	8.7e-20	81.36	PREDICTED: metalloendoproteinase 1-like [Cucumis sativus] >KGN52418.1 hypothetic...	[more]
XP_008458907.1	6.3e-18	79.66	PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo]	[more]

BLAST of Carg02276 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24140.1	2.7e-07	38.33	Matrixin family protein	[more]
AT1G70170.1	1.9e-05	35.59	matrix metalloproteinase	[more]
AT1G59970.1	1.3e-04	39.29	Matrixin family protein	[more]

BLAST of Carg02276 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XF51\|3MMP_ARATH	4.9e-06	38.33	Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana OX=3702 GN=3MMP PE=1 SV=1	[more]
sp\|O04529\|2MMP_ARATH	3.5e-04	35.59	Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana OX=3702 GN=2MMP PE=1 SV=1	[more]

BLAST of Carg02276 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C925\|A0A1S3C925_CUCME	2.6e-20	81.36	metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498039 PE=3 SV...	[more]
tr\|A0A0A0KS47\|A0A0A0KS47_CUCSA	5.8e-20	81.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633160 PE=3 SV=1	[more]
tr\|A0A1S3C9I6\|A0A1S3C9I6_CUCME	4.1e-18	79.66	metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498171 PE=3 SV...	[more]
tr\|A0A0A0KU08\|A0A0A0KU08_CUCSA	7.1e-18	76.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G632130 PE=3 SV=1	[more]
tr\|A0A0A0KS39\|A0A0A0KS39_CUCSA	5.8e-12	64.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G632120 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02276-RA	Carg02276-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10201	MATRIX METALLOPROTEINASE	coord: 1..61
None	No IPR available	PANTHER	PTHR10201:SF213	METALLOENDOPROTEINASE 2-MMP-RELATED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02276	CSPI05G28510	Wild cucumber (PI 183967)	carcpiB0297
Carg02276	Cla97C09G180020	Watermelon (97103) v2	carwmbB0279
Carg02276	Bhi06G000389	Wax gourd	carwgoB0339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02276	Wax gourd	carwgoB0352
Carg02276	Silver-seed gourd	carcarB299
Carg02276	Silver-seed gourd	carcarB300
Carg02276	Silver-seed gourd	carcarB306
Carg02276	Silver-seed gourd	carcarB312
Carg02276	Cucumber (Gy14) v2	carcgybB0280
Carg02276	Cucumber (Gy14) v1	carcgyB0304
Carg02276	Cucumber (Gy14) v1	carcgyB0309
Carg02276	Cucurbita maxima (Rimu)	carcmaB0364
Carg02276	Cucurbita maxima (Rimu)	carcmaB0359
Carg02276	Cucurbita maxima (Rimu)	carcmaB0360
Carg02276	Cucurbita maxima (Rimu)	carcmaB0362
Carg02276	Cucurbita maxima (Rimu)	carcmaB0374
Carg02276	Cucurbita moschata (Rifu)	carcmoB0360
Carg02276	Cucurbita moschata (Rifu)	carcmoB0362
Carg02276	Cucurbita moschata (Rifu)	carcmoB0370
Carg02276	Cucurbita pepo (Zucchini)	carcpeB0363
Carg02276	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02276	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02276	Cucurbita pepo (Zucchini)	carcpeB0378
Carg02276	Wild cucumber (PI 183967)	carcpiB0288
Carg02276	Cucumber (Chinese Long) v2	carcuB0285
Carg02276	Cucumber (Chinese Long) v2	carcuB0293
Carg02276	Cucumber (Chinese Long) v3	carcucB0296
Carg02276	Bottle gourd (USVL1VR-Ls)	carlsiB232
Carg02276	Bottle gourd (USVL1VR-Ls)	carlsiB233
Carg02276	Melon (DHL92) v3.5.1	carmeB0260
Carg02276	Melon (DHL92) v3.5.1	carmeB0266
Carg02276	Melon (DHL92) v3.6.1	carmedB0270
Carg02276	Melon (DHL92) v3.6.1	carmedB0277
Carg02276	Watermelon (Charleston Gray)	carwcgB0249
Carg02276	Watermelon (97103) v1	carwmB0246
Carg02276	Watermelon (97103) v2	carwmbB0263