Carg01839 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01839
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	homocysteine S-methyltransferase 1
Location	Cucurbita_argyrosperma_scaffold_003 : 704168 .. 704483 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGAAGCACGGTGCAGGAGGTTGTGCGGTGATTGATGGAGGTTTCGCCACGCAGCTTGAGAAACACGGCGCTGTCATTGACGATCCACTTTTGGAGCGCCGTTTGCCTCATCAATGATCATGACCTGATCAAGAAGGTCATGTCTTACCGTTTCTGTTTTTTTTCTTTTTTCCTCTTCTTTGTTTCGGTGCATCACGTTCTCATCGGTGCTTATTGATCGGTGCTTATTGATTGGATTAAATGCGCAGGGCCATTTGGAGTACTTGGAGGCAGGGATAAATATTTTGGTTTCTTCGTCTTACCAGGTTTGTAA

mRNA sequence

GAGAAGAAGCACGGTGCAGGAGGTTGTGCGGTGATTGATGGAGGTTTCGCCACGCAGCTTGAGAAACACGGCGCTGTCATTGACGATCCACTTTTGGAGCGCCGGCCATTTGGAGTACTTGGAGGCAGGGATAAATATTTTGGTTTCTTCGTCTTACCAGGTTTGTAA

Coding sequence (CDS)

GAGAAGAAGCACGGTGCAGGAGGTTGTGCGGTGATTGATGGAGGTTTCGCCACGCAGCTTGAGAAACACGGCGCTGTCATTGACGATCCACTTTTGGAGCGCCGGCCATTTGGAGTACTTGGAGGCAGGGATAAATATTTTGGTTTCTTCGTCTTACCAGGTTTGTAA

Protein sequence

EKKHGAGGCAVIDGGFATQLEKHGAVIDDPLLERRPFGVLGGRDKYFGFFVLPGL

Homology

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BLAST of Carg01839 vs. NCBI nr
Match: XP_004135092.1 (PREDICTED: homocysteine S-methyltransferase 1 [Cucumis sativus] >KGN52080.1 hypothetical protein Csa_5G609660 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  HGAGGCAVIDGGFATQLEKHGAVIDDPL 32
          H AGGCAVIDGGFATQLEKHGAVI+DPL
Sbjct: 15 HNAGGCAVIDGGFATQLEKHGAVINDPL 42

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BLAST of Carg01839 vs. NCBI nr
Match: XP_022150665.1 (homocysteine S-methyltransferase 1 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAVIDGGFATQLEKHGAVI+DPL
Sbjct: 17 AGGCAVIDGGFATQLEKHGAVINDPL 42

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BLAST of Carg01839 vs. NCBI nr
Match: XP_008446599.1 (PREDICTED: homocysteine S-methyltransferase 1 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 8.9e-05
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 4  HGAGGCAVIDGGFATQLEKHGAVIDDPL 32
          H AGGCAVIDGG ATQLEKHGAV +DPL
Sbjct: 15 HNAGGCAVIDGGLATQLEKHGAVFNDPL 42

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BLAST of Carg01839 vs. NCBI nr
Match: XP_018825315.1 (PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Juglans regia])

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAV+DGGFATQLE+HGAVI+DPL
Sbjct: 17 AGGCAVVDGGFATQLERHGAVINDPL 42

[Close]

BLAST of Carg01839 vs. NCBI nr
Match: XP_018825316.1 (PREDICTED: homocysteine S-methyltransferase 1 isoform X2 [Juglans regia])

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAV+DGGFATQLE+HGAVI+DPL
Sbjct: 17 AGGCAVVDGGFATQLERHGAVINDPL 42

[Close]

BLAST of Carg01839 vs. TAIR10
Match: AT3G25900.1 (Homocysteine S-methyltransferase family protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-07
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GGCAV+DGGFATQLE HGA I+DPL
Sbjct: 18 GGCAVVDGGFATQLEIHGAAINDPL 42

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BLAST of Carg01839 vs. TAIR10
Match: AT3G22740.1 (homocysteine S-methyltransferase 3)

HSP 1 Score: 43.9 bits (102), Expect = 3.7e-05
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GG AV+DGGFAT+L++HGA I+DPL
Sbjct: 21 GGYAVVDGGFATELQRHGADINDPL 45

[Close]

BLAST of Carg01839 vs. TAIR10
Match: AT3G63250.1 (homocysteine methyltransferase 2)

HSP 1 Score: 40.8 bits (94), Expect = 3.2e-04
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GG AVIDGG AT+ E+HGA ++DPL
Sbjct: 17 GGYAVIDGGLATEFERHGADLNDPL 41

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BLAST of Carg01839 vs. Swiss-Prot
Match: sp|Q9SDL7|HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GGCAV+DGGFATQLE HGA I+DPL
Sbjct: 18 GGCAVVDGGFATQLEIHGAAINDPL 42

[Close]

BLAST of Carg01839 vs. Swiss-Prot
Match: sp|A4ZGQ8|HMT1_BRAOT (Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN=HMT1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GGCAV+DGGFATQLE HGA I+DPL
Sbjct: 18 GGCAVVDGGFATQLEIHGAAINDPL 42

[Close]

BLAST of Carg01839 vs. Swiss-Prot
Match: sp|Q9FUN0|HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays OX=4577 GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.9e-05
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAVIDGGFATQLE  GA I+DPL
Sbjct: 11 AGGCAVIDGGFATQLEALGADINDPL 36

[Close]

BLAST of Carg01839 vs. Swiss-Prot
Match: sp|Q8LAX0|HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HMT3 PE=1 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 6.7e-04
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 7  GGCAVIDGGFATQLEKHGAVIDDPL 32
          GG AV+DGGFAT+L++HGA I+DPL
Sbjct: 21 GGYAVVDGGFATELQRHGADINDPL 45

[Close]

BLAST of Carg01839 vs. TrEMBL
Match: tr|A0A0A0KR42|A0A0A0KR42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609660 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 4  HGAGGCAVIDGGFATQLEKHGAVIDDPL 32
          H AGGCAVIDGGFATQLEKHGAVI+DPL
Sbjct: 15 HNAGGCAVIDGGFATQLEKHGAVINDPL 42

[Close]

BLAST of Carg01839 vs. TrEMBL
Match: tr|A0A1S3BEY1|A0A1S3BEY1_CUCME (homocysteine S-methyltransferase 1 OS=Cucumis melo OX=3656 GN=LOC103489284 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-05
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 4  HGAGGCAVIDGGFATQLEKHGAVIDDPL 32
          H AGGCAVIDGG ATQLEKHGAV +DPL
Sbjct: 15 HNAGGCAVIDGGLATQLEKHGAVFNDPL 42

[Close]

BLAST of Carg01839 vs. TrEMBL
Match: tr|A0A2N9FW00|A0A2N9FW00_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22699 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAV+DGGFATQLE+HGAVI+DPL
Sbjct: 15 AGGCAVVDGGFATQLERHGAVINDPL 40

[Close]

BLAST of Carg01839 vs. TrEMBL
Match: tr|A0A2I4F0Z3|A0A2I4F0Z3_9ROSI (homocysteine S-methyltransferase 1 isoform X1 OS=Juglans regia OX=51240 GN=LOC108994524 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAV+DGGFATQLE+HGAVI+DPL
Sbjct: 17 AGGCAVVDGGFATQLERHGAVINDPL 42

[Close]

BLAST of Carg01839 vs. TrEMBL
Match: tr|A0A2I4F0Z4|A0A2I4F0Z4_9ROSI (homocysteine S-methyltransferase 1 isoform X2 OS=Juglans regia OX=51240 GN=LOC108994524 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 6  AGGCAVIDGGFATQLEKHGAVIDDPL 32
          AGGCAV+DGGFATQLE+HGAVI+DPL
Sbjct: 17 AGGCAVVDGGFATQLERHGAVINDPL 42

The following BLAST results are available for this feature:

BLAST of Carg01839 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135092.1	6.2e-06	92.86	PREDICTED: homocysteine S-methyltransferase 1 [Cucumis sativus] >KGN52080.1 hypo...	[more]
XP_022150665.1	4.0e-05	96.15	homocysteine S-methyltransferase 1 [Momordica charantia]	[more]
XP_008446599.1	8.9e-05	85.71	PREDICTED: homocysteine S-methyltransferase 1 [Cucumis melo]	[more]
XP_018825315.1	1.2e-04	88.46	PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Juglans regia]	[more]
XP_018825316.1	1.2e-04	88.46	PREDICTED: homocysteine S-methyltransferase 1 isoform X2 [Juglans regia]	[more]

BLAST of Carg01839 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25900.1	6.8e-07	84.00	Homocysteine S-methyltransferase family protein	[more]
AT3G22740.1	3.7e-05	72.00	homocysteine S-methyltransferase 3	[more]
AT3G63250.1	3.2e-04	68.00	homocysteine methyltransferase 2	[more]

BLAST of Carg01839 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SDL7\|HMT1_ARATH	1.2e-05	84.00	Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HMT-1 PE=1...	[more]
sp\|A4ZGQ8\|HMT1_BRAOT	1.2e-05	84.00	Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN...	[more]
sp\|Q9FUN0\|HMT1_MAIZE	7.9e-05	84.62	Homocysteine S-methyltransferase 1 OS=Zea mays OX=4577 GN=HMT-1 PE=2 SV=1	[more]
sp\|Q8LAX0\|HMT3_ARATH	6.7e-04	72.00	Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HMT3 PE=1 ...	[more]

BLAST of Carg01839 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KR42\|A0A0A0KR42_CUCSA	4.1e-06	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609660 PE=4 SV=1	[more]
tr\|A0A1S3BEY1\|A0A1S3BEY1_CUCME	5.9e-05	85.71	homocysteine S-methyltransferase 1 OS=Cucumis melo OX=3656 GN=LOC103489284 PE=4 ...	[more]
tr\|A0A2N9FW00\|A0A2N9FW00_FAGSY	7.7e-05	88.46	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22699 PE=4 SV=1	[more]
tr\|A0A2I4F0Z3\|A0A2I4F0Z3_9ROSI	7.7e-05	88.46	homocysteine S-methyltransferase 1 isoform X1 OS=Juglans regia OX=51240 GN=LOC10...	[more]
tr\|A0A2I4F0Z4\|A0A2I4F0Z4_9ROSI	7.7e-05	88.46	homocysteine S-methyltransferase 1 isoform X2 OS=Juglans regia OX=51240 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01839-RA	Carg01839-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01839	Bhi07G001105	Wax gourd	carwgoB0983

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01839	Silver-seed gourd	carcarB538
Carg01839	Silver-seed gourd	carcarB461
Carg01839	Silver-seed gourd	carcarB627
Carg01839	Cucumber (Gy14) v2	carcgybB0830
Carg01839	Cucumber (Gy14) v2	carcgybB0831
Carg01839	Cucumber (Gy14) v1	carcgyB0965
Carg01839	Cucumber (Gy14) v1	carcgyB0968
Carg01839	Cucurbita maxima (Rimu)	carcmaB1160
Carg01839	Cucurbita maxima (Rimu)	carcmaB1161
Carg01839	Cucurbita maxima (Rimu)	carcmaB1167
Carg01839	Cucurbita maxima (Rimu)	carcmaB1169
Carg01839	Cucurbita maxima (Rimu)	carcmaB1170
Carg01839	Cucurbita moschata (Rifu)	carcmoB1130
Carg01839	Cucurbita moschata (Rifu)	carcmoB1135
Carg01839	Cucurbita moschata (Rifu)	carcmoB1137
Carg01839	Cucurbita moschata (Rifu)	carcmoB1138
Carg01839	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01839	Cucurbita pepo (Zucchini)	carcpeB1175
Carg01839	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01839	Cucurbita pepo (Zucchini)	carcpeB1180
Carg01839	Wild cucumber (PI 183967)	carcpiB0876
Carg01839	Wild cucumber (PI 183967)	carcpiB0877
Carg01839	Cucumber (Chinese Long) v2	carcuB0856
Carg01839	Cucumber (Chinese Long) v2	carcuB0857
Carg01839	Cucumber (Chinese Long) v2	carcuB0863
Carg01839	Cucumber (Chinese Long) v3	carcucB0887
Carg01839	Cucumber (Chinese Long) v3	carcucB0880
Carg01839	Cucumber (Chinese Long) v3	carcucB0881
Carg01839	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01839	Bottle gourd (USVL1VR-Ls)	carlsiB768
Carg01839	Melon (DHL92) v3.5.1	carmeB0834
Carg01839	Melon (DHL92) v3.5.1	carmeB0835
Carg01839	Melon (DHL92) v3.6.1	carmedB0846
Carg01839	Melon (DHL92) v3.6.1	carmedB0847
Carg01839	Watermelon (Charleston Gray)	carwcgB0817
Carg01839	Watermelon (Charleston Gray)	carwcgB0816
Carg01839	Watermelon (Charleston Gray)	carwcgB0818
Carg01839	Watermelon (97103) v1	carwmB0837
Carg01839	Watermelon (97103) v1	carwmB0842
Carg01839	Watermelon (97103) v1	carwmB0846
Carg01839	Watermelon (97103) v2	carwmbB0880
Carg01839	Watermelon (97103) v2	carwmbB0878
Carg01839	Wax gourd	carwgoB0976