Carg01744 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01744
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	tetratricopeptide repeat protein 38
Location	Cucurbita_argyrosperma_scaffold_003 : 206036 .. 207749 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCGTAAGTGATAGTGGATATCGAATTAAACAAGAATCCAATTTCTATCCGATTCTGGCTGACAAGTTCTATCGTTTTTGGTTCAATTCCAGGGGATTTGGGGATTAATCTTCTGCGCCGAGAAAGCGACTCATTCTTACGGTCGCAGTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTTCTTCTTCTCCCTGGATCTTCCGCCATTGGCGTTCTTCAATTTTCGATTATCTGAAACGGGGTGTTGGGTTTCTTTCTTTTCTAATTGATGTAATGTAATTGACTCAAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGTTAGTTTTCACTTTTTTCTTTTTGGTATGAACATGTTCATTTCGTATCTTTGTGGTCATTGGAGATTTCTGTTGACAAATTGCTTGAATTGTCGCTATTTTGATAAGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGGTACTTGAAGATTGATCTCTTTTAAGCTCTTCTCTTTTCACCATTCATCAACATTTCCACTAATTTGATCTAAGAAACTTTCTACATCAAGAAGATCCTAGAGAAAATTTACAATTTTATAGAACATAATGGGATTTGAGTTGCCTTGAAGTCAGAATCCAGGATGAAGAATCTTTCAATTGCTAACTTGCTGTTATGGGATTTCTTTCAGAGATACAGTCTTATTTCTTGATATTTTCTTCTATTTGATTCTGCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTGCCATTTCTACCTAAGAAACTAGTTTTCCTACTTATCAGTTTATAGGTGGTTTTAATAAAGAAATTATTGAAAACCTGCTTTTATTGAGATAAAATGAAGAGCACAATAGGACATTAAAGGCTGCCTAGCCGAAACACCGAGACCCGATCACTTTACTAGTGGGGAATGCATGAATTTGAATGTTAAGTGTATCGATAGATTCTTCCAAATATTCACTTATTGAATACTATGAAGAATACATAAAATTTTAAGCTTTGAAGGATTAATTTGACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

mRNA sequence

ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

Coding sequence (CDS)

ATGCGTGGAGGGGGCGATGATCGGCATCAGAACGCAGAAGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCACTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGGCTTTGGTTGGGCACTCTCAGACACCAACACCACGTCTCAGAACCATGGAAGATGGACTGAAATTGACCAAATGGGGTTACGAAGTTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAGGAGGTCTGTGATTCTGGAGGCGCCTGTTCATGACAAACACTGTGTGCTTGCGAATGTTTTCGCTGCTTATTTCCTTTCATCCTCCGATCCTTCGCGAGTTCATCATCATCTCCAAGCAGCCAAGCCCGGTCTGGATCGTGCAACCCCATACGAGAAAGCCGTTTATGACGCTATCAATTGTTTGATGTCCAACGACAGAGACGATAATGTTGCTGTTGAATTGCTCACTCAGCTGCTTAAAAGTTTTCCAAAGGATCTATTGTCTTTGAAAAAGGCTCAAGTGCTATGCTTTTACATGGGAAATCCGGATCTATCTTTGGCTTTGGTTCAACAGGTTTTACCCCAAAATCAAGAAGAGGGATTCATTTATGGCATGCTAGCTTTTCCTCTGTTGGAGCTTGGTTGCATGGAAGAAGCTGAGAAGGCTGCAAGAAGGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTTGA

Protein sequence

MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGHSQTPTPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARRGLDINKKDGWAQHAVSVI

Homology

[Close]

BLAST of Carg01744 vs. NCBI nr
Match: XP_022956843.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 6.6e-109
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. NCBI nr
Match: XP_022956844.1 (tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 6.6e-109
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. NCBI nr
Match: XP_023537841.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK GLDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. NCBI nr
Match: XP_022976868.1 (tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 189/198 (95.45%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEV TSSD+CISAINAFYDQVLSYGRRRSVILEAPVHDK CVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK  LDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           A+RGLDINKKDGWAQHA+
Sbjct: 181 AKRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. NCBI nr
Match: XP_022976859.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 189/198 (95.45%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDGLKLTKWGYEV TSSD+CISAINAFYDQVLSYGRRRSVILEAPVHDK CVLANVFAA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           YFLSSSDPSRVHHHLQAAK  LDRATPYEKAVYDAI+CLMSNDRDDNVAVELLTQLLKSF
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           A+RGLDINKKDGWAQHA+
Sbjct: 181 AKRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. TAIR10
Match: AT1G27150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-71
Identity = 125/198 (63.13%), Postives = 161/198 (81.31%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           ME  ++  +WGYEV TSSDACI AIN+++ QVLSYGR+R VILEAP++DK CVL ++ AA
Sbjct: 1   MEKTVRCVRWGYEVNTSSDACIDAINSYFQQVLSYGRKRKVILEAPLYDKDCVLGSILAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FLSSSDPSR + +++AA   L+++TPYEKAVY+A+  L+S DRDD++A E+ T+LLK F
Sbjct: 61  HFLSSSDPSRANSYVEAAASNLEQSTPYEKAVYEAVTYLISEDRDDDLAFEMHTKLLKRF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL SLK+AQ+L FYMG PD  L LVQQVLP NQEE +I+G+LAFPLLELG MEEA  A
Sbjct: 121 PKDLASLKRAQLLSFYMGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           +R+G +INK+D WA H +
Sbjct: 181 SRKGYEINKEDAWAHHCL 198

[Close]

BLAST of Carg01744 vs. TAIR10
Match: AT1G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 5.8e-59
Identity = 109/204 (53.43%), Postives = 151/204 (74.02%), Query Frame = 0


Query: 65  TPRLRTMEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVL 124
           T  L+ M++  +    GYEV TSSD CI++IN++ DQVL YGR + VILEAP +D  CVL
Sbjct: 6   TMSLKCMKEESRFVSCGYEVNTSSDDCIASINSYSDQVLGYGREKKVILEAPNYDNDCVL 65

Query: 125 ANVFAAYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLT 184
           AN+ AA++LSS DP R   +  AA+  L +AT YEKAV++A++ L+S + DD+VA+EL +
Sbjct: 66  ANILAAHYLSSFDPVRARSYALAAESRLGKATLYEKAVFEAVSYLLSENMDDDVALELHS 125

Query: 185 QLLKSFPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCM 244
           +LLK FPKDLLS K+ + LC YMG  DLSL L +++LPQN+ + ++ GMLAF L+ELG +
Sbjct: 126 KLLKKFPKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHL 185

Query: 245 EEAEKAARRGLDINKKDGWAQHAV 269
            EAE+AAR+G +IN+ D WA HA+
Sbjct: 186 REAEEAARKGCEINENDSWAHHAL 209

[Close]

BLAST of Carg01744 vs. TrEMBL
Match: tr|A0A0A0KSI1|A0A0A0KSI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 4.7e-95
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MEDG+KLTKWGY +RTSSD CISAINAFYDQVLSYGR+RSVILEA VHDK CVLANV  A
Sbjct: 1   MEDGVKLTKWGYGIRTSSDDCISAINAFYDQVLSYGRKRSVILEATVHDKDCVLANVLGA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FLSSSDPSR H+HLQ AK GLDRATPYEKAV+DAI+CLMSNDRDDNVAVEL T+LLK+F
Sbjct: 61  HFLSSSDPSRAHYHLQTAKAGLDRATPYEKAVFDAISCLMSNDRDDNVAVELHTELLKNF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL SLK+AQVLCFY+G+ DLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLSSLKRAQVLCFYLGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDINKKDGWAQHA+
Sbjct: 181 ARRGLDINKKDGWAQHAL 198

[Close]

BLAST of Carg01744 vs. TrEMBL
Match: tr|A0A1S3BFD6|A0A1S3BFD6_CUCME (tetratricopeptide repeat protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489066 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.0e-89
Identity = 167/198 (84.34%), Postives = 182/198 (91.92%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           MED +KLTKWGY +RTSSD CISAIN FYDQVLSYGRRRSVILEA VHDK CVLANV AA
Sbjct: 1   MEDEVKLTKWGYGIRTSSDDCISAINEFYDQVLSYGRRRSVILEATVHDKDCVLANVLAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FLSSSD SR H+HLQAAK G+DRATPYEKAV+DAI+ LMSNDRDDNVAVEL T+LLK+F
Sbjct: 61  HFLSSSDSSRAHYHLQAAKAGVDRATPYEKAVFDAISYLMSNDRDDNVAVELHTELLKNF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL SLK+AQVLCFY+G+ DLSLALV+QVLPQNQEEGFIYGMLAF LLELGCMEEAEKA
Sbjct: 121 PKDLSSLKRAQVLCFYLGSDDLSLALVEQVLPQNQEEGFIYGMLAFSLLELGCMEEAEKA 180

Query: 251 ARRGLDINKKDGWAQHAV 269
           ARRGLDI+KKD WAQHA+
Sbjct: 181 ARRGLDIDKKDSWAQHAL 198

[Close]

BLAST of Carg01744 vs. TrEMBL
Match: tr|M5XDZ3|M5XDZ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G265000 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 145/196 (73.98%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           ME G+K+ KWGYEVRTSSDACISAI+ FYDQVLSYGR RSVILEAP HDK CVLAN+ AA
Sbjct: 1   MEGGVKVDKWGYEVRTSSDACISAIDDFYDQVLSYGRDRSVILEAPSHDKDCVLANILAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FL SSDPSR   HLQAAK  L++AT YEKAV+DA+NCL+S +RDD+VAVEL ++LLKSF
Sbjct: 61  HFLCSSDPSRAPSHLQAAKSRLEQATQYEKAVFDAVNCLISENRDDDVAVELHSKLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL+SLK+AQVLCFYM  PDLSL LVQQVLP N++E +IYGML+FPLLELG M EAEKA
Sbjct: 121 PKDLVSLKRAQVLCFYMARPDLSLDLVQQVLPNNEQENYIYGMLSFPLLELGRMTEAEKA 180

Query: 251 ARRGLDINKKDGWAQH 267
           A++G +INK+D W  H
Sbjct: 181 AKKGYEINKQDCWVHH 196

[Close]

BLAST of Carg01744 vs. TrEMBL
Match: tr|A0A251R3P9|A0A251R3P9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G265000 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 145/196 (73.98%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 71  MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 130
           ME G+K+ KWGYEVRTSSDACISAI+ FYDQVLSYGR RSVILEAP HDK CVLAN+ AA
Sbjct: 1   MEGGVKVDKWGYEVRTSSDACISAIDDFYDQVLSYGRDRSVILEAPSHDKDCVLANILAA 60

Query: 131 YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 190
           +FL SSDPSR   HLQAAK  L++AT YEKAV+DA+NCL+S +RDD+VAVEL ++LLKSF
Sbjct: 61  HFLCSSDPSRAPSHLQAAKSRLEQATQYEKAVFDAVNCLISENRDDDVAVELHSKLLKSF 120

Query: 191 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 250
           PKDL+SLK+AQVLCFYM  PDLSL LVQQVLP N++E +IYGML+FPLLELG M EAEKA
Sbjct: 121 PKDLVSLKRAQVLCFYMARPDLSLDLVQQVLPNNEQENYIYGMLSFPLLELGRMTEAEKA 180

Query: 251 ARRGLDINKKDGWAQH 267
           A++G +INK+D W  H
Sbjct: 181 AKKGYEINKQDCWVHH 196

[Close]

BLAST of Carg01744 vs. TrEMBL
Match: tr|A0A2P6R4C0|A0A2P6R4C0_ROSCH (Putative tetratricopeptide repeat protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0445221 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.5e-77
Identity = 147/197 (74.62%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 71  MEDG-LKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFA 130
           ME G +K+ KWGYEV TSSDACISAINAFYDQVLSYGRRRSVILEAP HD +CVLAN+ A
Sbjct: 1   MERGVVKVDKWGYEVNTSSDACISAINAFYDQVLSYGRRRSVILEAPAHDHNCVLANILA 60

Query: 131 AYFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKS 190
           A+FL SSDPS+   HLQAAK  L++AT YEKAV+DA+NCL+S DRDD+VA EL ++LLKS
Sbjct: 61  AHFLCSSDPSKAPSHLQAAKSRLEQATSYEKAVFDAVNCLISKDRDDDVAFELHSKLLKS 120

Query: 191 FPKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEK 250
           FPKDL+SLK+AQVLCFYM  PDLSL LVQQVLP NQ+E +IYGMLAFPLLELG M +AEK
Sbjct: 121 FPKDLVSLKRAQVLCFYMARPDLSLDLVQQVLPSNQQEEYIYGMLAFPLLELGRMADAEK 180

Query: 251 AARRGLDINKKDGWAQH 267
           AAR+G +INK+D W  H
Sbjct: 181 AARKGYEINKQDCWTHH 197

The following BLAST results are available for this feature:

BLAST of Carg01744 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956843.1	6.6e-109	99.49	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata]	[more]
XP_022956844.1	6.6e-109	99.49	tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata]	[more]
XP_023537841.1	2.1e-107	98.48	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022976868.1	1.4e-103	95.45	tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita maxima]	[more]
XP_022976859.1	1.4e-103	95.45	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg01744 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27150.1	2.3e-71	63.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27110.1	5.8e-59	53.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg01744 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01744 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSI1\|A0A0A0KSI1_CUCSA	4.7e-95	87.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=4 SV=1	[more]
tr\|A0A1S3BFD6\|A0A1S3BFD6_CUCME	1.0e-89	84.34	tetratricopeptide repeat protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|M5XDZ3\|M5XDZ3_PRUPE	1.2e-77	73.98	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G265000 PE=4 SV=1	[more]
tr\|A0A251R3P9\|A0A251R3P9_PRUPE	1.2e-77	73.98	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G265000 PE=4 SV=1	[more]
tr\|A0A2P6R4C0\|A0A2P6R4C0_ROSCH	1.5e-77	74.62	Putative tetratricopeptide repeat protein OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033891	TTC38
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01744-RA	Carg01744-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 136..270 e-value: 9.2E-8 score: 33.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 175..267
IPR033891	Tetratricopeptide repeat protein 38	PANTHER	PTHR16263	FAMILY NOT NAMED	coord: 72..269
None	No IPR available	PANTHER	PTHR16263:SF4	TETRATRICOPEPTIDE REPEAT PROTEIN 38	coord: 72..269

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01744	CmoCh04G016920	Cucurbita moschata (Rifu)	carcmoB1138
Carg01744	Lsi04G004890	Bottle gourd (USVL1VR-Ls)	carlsiB764

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01744	Cucumber (Gy14) v2	carcgybB0833
Carg01744	Cucumber (Gy14) v1	carcgyB0966
Carg01744	Cucurbita maxima (Rimu)	carcmaB1170
Carg01744	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01744	Wild cucumber (PI 183967)	carcpiB0880
Carg01744	Cucumber (Chinese Long) v2	carcuB0860
Carg01744	Cucumber (Chinese Long) v3	carcucB0884
Carg01744	Melon (DHL92) v3.5.1	carmeB0831
Carg01744	Melon (DHL92) v3.6.1	carmedB0843
Carg01744	Watermelon (Charleston Gray)	carwcgB0813
Carg01744	Watermelon (97103) v1	carwmB0839
Carg01744	Watermelon (97103) v2	carwmbB0871
Carg01744	Watermelon (97103) v2	carwmbB0875
Carg01744	Watermelon (97103) v2	carwmbB0879
Carg01744	Watermelon (97103) v2	carwmbB0882
Carg01744	Wax gourd	carwgoB0978
Carg01744	Wax gourd	carwgoB0980